Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 376 - 453 | 5.1e-14 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 221 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 460 |
| AccIII | TCCGGA | 1 cut(s) | 1042 |
| AciI | CCGC | 3 cut(s) | 329, 621, 1030 |
| AclWI | GGATC | 4 cut(s) | 113, 126, 484, 497 |
| AcsI | RAATTY | 3 cut(s) | 66, 1194, 1328 |
| AdeI | CACNNNGTG | 1 cut(s) | 885 |
| AfaI | GTAC | 4 cut(s) | 33, 296, 661, 1325 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 411, 460, 804 |
| AflII | CTTAAG | 2 cut(s) | 71, 1247 |
| AgsI | TTSAA | 9 cut(s) | 181, 286, 350, 380, 425, 559, 715, 922, 1277 |
| AluBI | AGCT | 3 cut(s) | 745, 1246, 1360 |
| AluI | AGCT | 3 cut(s) | 745, 1246, 1360 |
| Alw21I | GWGCWC | 1 cut(s) | 1362 |
| Alw26I | GTCTC | 3 cut(s) | 107, 997, 1337 |
| AlwI | GGATC | 4 cut(s) | 113, 126, 484, 497 |
| Ama87I | CYCGRG | 1 cut(s) | 91 |
| Aor13HI | TCCGGA | 1 cut(s) | 1042 |
| AoxI | GGCC | 2 cut(s) | 450, 1023 |
| ApoI | RAATTY | 3 cut(s) | 66, 1194, 1328 |
| AspA2I | CCTAGG | 1 cut(s) | 1319 |
| AspLEI | GCGC | 2 cut(s) | 325, 701 |
| AspS9I | GGNCC | 4 cut(s) | 158, 414, 451, 1037 |
| AsuC2I | CCSGG | 2 cut(s) | 92, 93 |
| AsuHPI | GGTGA | 5 cut(s) | 256, 536, 1024, 1174, 1294 |
| AvaI | CYCGRG | 1 cut(s) | 91 |
| AvaII | GGWCC | 3 cut(s) | 158, 414, 1037 |
| AvrII | CCTAGG | 1 cut(s) | 1319 |
| BamHI | GGATCC | 2 cut(s) | 118, 489 |
| BanII | GRGCYC | 2 cut(s) | 682, 1362 |
| BbsI | GAAGAC | 1 cut(s) | 649 |
| Bbv12I | GWGCWC | 1 cut(s) | 1362 |
| BccI | CCATC | 4 cut(s) | 145, 725, 940, 1001 |
| BceAI | ACGGC | 1 cut(s) | 465 |
| BciVI | GTATCC | 1 cut(s) | 872 |
| BcnI | CCSGG | 2 cut(s) | 92, 93 |
| BcoDI | GTCTC | 3 cut(s) | 107, 997, 1337 |
| BfaI | CTAG | 5 cut(s) | 99, 545, 606, 1320, 1352 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| BfrI | CTTAAG | 2 cut(s) | 71, 1247 |
| BfuI | GTATCC | 1 cut(s) | 872 |
| BlnI | CCTAGG | 1 cut(s) | 1319 |
| BmcAI | AGTACT | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 2 cut(s) | 92, 93 |
| Bme18I | GGWCC | 3 cut(s) | 158, 414, 1037 |
| BmeT110I | CYCGRG | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 4 cut(s) | 158, 414, 451, 1037 |
| BmiI | GGNNCC | 3 cut(s) | 120, 491, 1038 |
| BmrFI | CCNGG | 2 cut(s) | 92, 93 |
| BmsI | GCATC | 3 cut(s) | 222, 751, 1093 |
| BoxI | GACNNNNGTC | 1 cut(s) | 649 |
| BpiI | GAAGAC | 1 cut(s) | 649 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 947, 979, 977, 1009 |
| BpuEI | CTTGAG | 1 cut(s) | 632 |
| BpuMI | CCSGG | 2 cut(s) | 92, 93 |
| BsaI | GGTCTC | 1 cut(s) | 997 |
| BsaJI | CCNNGG | 2 cut(s) | 91, 1319 |
| BsaWI | WCCGGW | 2 cut(s) | 160, 1042 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 147, 177, 1117, 1147 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 411, 460, 804 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse3DI | GCAATG | 1 cut(s) | 16 |
| BseAI | TCCGGA | 1 cut(s) | 1042 |
| BseDI | CCNNGG | 2 cut(s) | 91, 1319 |
| BseGI | GGATG | 5 cut(s) | 156, 736, 794, 858, 1057 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 411, 460, 804 |
| BseMI | GCAATG | 1 cut(s) | 16 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BseRI | GAGGAG | 1 cut(s) | 1001 |
| BshFI | GGCC | 2 cut(s) | 452, 1025 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1362 |
| BsiHKCI | CYCGRG | 1 cut(s) | 91 |
| BsiSI | CCGG | 3 cut(s) | 92, 161, 1043 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 411, 460, 804 |
| BsmAI | GTCTC | 3 cut(s) | 107, 997, 1337 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| BsmI | GAATGC | 2 cut(s) | 14, 895 |
| BsnI | GGCC | 2 cut(s) | 452, 1025 |
| Bso31I | GGTCTC | 1 cut(s) | 997 |
| BsoBI | CYCGRG | 1 cut(s) | 91 |
| Bsp1286I | GDGCHC | 2 cut(s) | 682, 1362 |
| Bsp13I | TCCGGA | 1 cut(s) | 1042 |
| Bsp143I | GATC | 2 cut(s) | 118, 489 |
| BspACI | CCGC | 3 cut(s) | 329, 621, 1030 |
| BspANI | GGCC | 2 cut(s) | 452, 1025 |
| BspEI | TCCGGA | 1 cut(s) | 1042 |
| BspLI | GGNNCC | 3 cut(s) | 120, 491, 1038 |
| BspPI | GGATC | 4 cut(s) | 113, 126, 484, 497 |
| BspQI | GCTCTTC | 1 cut(s) | 1350 |
| BspTI | CTTAAG | 2 cut(s) | 71, 1247 |
| BspTNI | GGTCTC | 1 cut(s) | 997 |
| BsrDI | GCAATG | 1 cut(s) | 16 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 2 cut(s) | 91, 1319 |
| BssMI | GATC | 2 cut(s) | 118, 489 |
| BssT1I | CCWWGG | 1 cut(s) | 1319 |
| Bst4CI | ACNGT | 1 cut(s) | 1162 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 1350 |
| BstAFI | CTTAAG | 2 cut(s) | 71, 1247 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 18 |
| BstC8I | GCNNGC | 2 cut(s) | 14, 327 |
| BstDEI | CTNAG | 4 cut(s) | 28, 746, 942, 1154 |
| BstF5I | GGATG | 5 cut(s) | 156, 736, 794, 858, 1057 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 2 cut(s) | 325, 701 |
| BstKTI | GATC | 2 cut(s) | 121, 492 |
| BstMAI | GTCTC | 3 cut(s) | 107, 997, 1337 |
| BstMBI | GATC | 2 cut(s) | 118, 489 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 649 |
| BstSCI | CCNGG | 2 cut(s) | 90, 91 |
| BstV2I | GAAGAC | 1 cut(s) | 649 |
| BstX2I | RGATCY | 2 cut(s) | 118, 489 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1033 |
| BstYI | RGATCY | 2 cut(s) | 118, 489 |
| BsuI | GTATCC | 1 cut(s) | 872 |
| BsuRI | GGCC | 2 cut(s) | 452, 1025 |
| BtsCI | GGATG | 5 cut(s) | 156, 736, 794, 858, 1057 |
| Cac8I | GCNNGC | 2 cut(s) | 14, 327 |
| CfoI | GCGC | 2 cut(s) | 325, 701 |
| Cfr13I | GGNCC | 4 cut(s) | 158, 414, 451, 1037 |
| Cfr9I | CCCGGG | 1 cut(s) | 91 |
| Csp6I | GTAC | 4 cut(s) | 32, 295, 660, 1324 |
| CviAII | CATG | 4 cut(s) | 53, 439, 634, 895 |
| CviQI | GTAC | 4 cut(s) | 32, 295, 660, 1324 |
| DdeI | CTNAG | 4 cut(s) | 28, 746, 942, 1154 |
| DpnI | GATC | 2 cut(s) | 120, 491 |
| DpnII | GATC | 2 cut(s) | 118, 489 |
| DraI | TTTAAA | 3 cut(s) | 928, 982, 1200 |
| DraIII | CACNNNGTG | 1 cut(s) | 885 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 1350 |
| EarI | CTCTTC | 2 cut(s) | 345, 1350 |
| Ecl136II | GAGCTC | 1 cut(s) | 1360 |
| Eco130I | CCWWGG | 1 cut(s) | 1319 |
| Eco24I | GRGCYC | 2 cut(s) | 682, 1362 |
| Eco31I | GGTCTC | 1 cut(s) | 997 |
| Eco47I | GGWCC | 3 cut(s) | 158, 414, 1037 |
| Eco53kI | GAGCTC | 1 cut(s) | 1360 |
| Eco88I | CYCGRG | 1 cut(s) | 91 |
| EcoICRI | GAGCTC | 1 cut(s) | 1360 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1037 |
| EcoRI | GAATTC | 1 cut(s) | 66 |
| EcoT14I | CCWWGG | 1 cut(s) | 1319 |
| EcoT38I | GRGCYC | 2 cut(s) | 682, 1362 |
| ErhI | CCWWGG | 1 cut(s) | 1319 |
| FaeI | CATG | 4 cut(s) | 56, 442, 637, 898 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 685, 717, 850, 882 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 4 cut(s) | 52, 438, 633, 894 |
| FauI | CCCGC | 1 cut(s) | 1023 |
| FokI | GGATG | 5 cut(s) | 163, 743, 781, 865, 1064 |
| FriOI | GRGCYC | 2 cut(s) | 682, 1362 |
| FspBI | CTAG | 5 cut(s) | 99, 545, 606, 1320, 1352 |
| GlaI | GCGC | 2 cut(s) | 324, 700 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HaeIII | GGCC | 2 cut(s) | 452, 1025 |
| HapII | CCGG | 3 cut(s) | 92, 161, 1043 |
| HhaI | GCGC | 2 cut(s) | 325, 701 |
| Hin1II | CATG | 4 cut(s) | 56, 442, 637, 898 |
| Hin6I | GCGC | 2 cut(s) | 323, 699 |
| HinP1I | GCGC | 2 cut(s) | 323, 699 |
| HindIII | AAGCTT | 1 cut(s) | 1244 |
| HinfI | GANTC | 6 cut(s) | 286, 421, 645, 812, 962, 1285 |
| HpaII | CCGG | 3 cut(s) | 92, 161, 1043 |
| HphI | GGTGA | 5 cut(s) | 256, 536, 1024, 1174, 1294 |
| Hpy188I | TCNGA | 1 cut(s) | 123 |
| Hpy188III | TCNNGA | 6 cut(s) | 266, 278, 545, 994, 1043, 1352 |
| HpyAV | CCTTC | 3 cut(s) | 349, 374, 721 |
| HpyCH4III | ACNGT | 1 cut(s) | 1162 |
| HpyCH4IV | ACGT | 1 cut(s) | 1139 |
| HpyCH4V | TGCA | 9 cut(s) | 12, 21, 481, 611, 629, 688, 1124, 1174, 1222 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| HpyF3I | CTNAG | 4 cut(s) | 28, 746, 942, 1154 |
| HpySE526I | ACGT | 1 cut(s) | 1139 |
| Hsp92II | CATG | 4 cut(s) | 56, 442, 637, 898 |
| HspAI | GCGC | 2 cut(s) | 323, 699 |
| Kpn2I | TCCGGA | 1 cut(s) | 1042 |
| Kzo9I | GATC | 2 cut(s) | 118, 489 |
| LguI | GCTCTTC | 1 cut(s) | 1350 |
| LpnPI | CCDG | 5 cut(s) | 20, 105, 174, 311, 1056 |
| LweI | GCATC | 3 cut(s) | 222, 751, 1093 |
| MaeI | CTAG | 5 cut(s) | 99, 545, 606, 1320, 1352 |
| MaeII | ACGT | 1 cut(s) | 1139 |
| MaeIII | GTNAC | 9 cut(s) | 166, 278, 508, 704, 877, 959, 1012, 1140, 1268 |
| MalI | GATC | 2 cut(s) | 120, 491 |
| MboI | GATC | 2 cut(s) | 118, 489 |
| MboII | GAAGA | 5 cut(s) | 362, 549, 654, 703, 1367 |
| MflI | RGATCY | 2 cut(s) | 118, 489 |
| MhlI | GDGCHC | 2 cut(s) | 682, 1362 |
| MluCI | AATT | 7 cut(s) | 48, 66, 469, 715, 772, 1194, 1328 |
| MlyI | GAGTC | 3 cut(s) | 639, 821, 956 |
| MmeI | TCCRAC | 3 cut(s) | 789, 1160, 1320 |
| MroI | TCCGGA | 1 cut(s) | 1042 |
| MseI | TTAA | 9 cut(s) | 72, 846, 909, 927, 981, 1089, 1148, 1199, 1248 |
| MslI | CAYNNNNRTG | 2 cut(s) | 522, 955 |
| MspCI | CTTAAG | 2 cut(s) | 71, 1247 |
| MspI | CCGG | 3 cut(s) | 92, 161, 1043 |
| MspR9I | CCNGG | 2 cut(s) | 92, 93 |
| Mva1269I | GAATGC | 2 cut(s) | 14, 895 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| NciI | CCSGG | 2 cut(s) | 92, 93 |
| NdeII | GATC | 2 cut(s) | 118, 489 |
| NlaIII | CATG | 4 cut(s) | 56, 442, 637, 898 |
| NlaIV | GGNNCC | 3 cut(s) | 120, 491, 1038 |
| NmeAIII | GCCGAG | 1 cut(s) | 1341 |
| NmuCI | GTSAC | 8 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268 |
| PciSI | GCTCTTC | 1 cut(s) | 1350 |
| PctI | GAATGC | 2 cut(s) | 14, 895 |
| PfeI | GAWTC | 3 cut(s) | 286, 421, 1285 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 460 |
| PleI | GAGTC | 3 cut(s) | 639, 820, 956 |
| PpsI | GAGTC | 3 cut(s) | 639, 820, 956 |
| PpuMI | RGGWCCY | 1 cut(s) | 1037 |
| PshAI | GACNNNNGTC | 1 cut(s) | 649 |
| PsiI | TTATAA | 1 cut(s) | 221 |
| Psp124BI | GAGCTC | 1 cut(s) | 1362 |
| Psp5II | RGGWCCY | 1 cut(s) | 1037 |
| PspN4I | GGNNCC | 3 cut(s) | 120, 491, 1038 |
| PspPI | GGNCC | 4 cut(s) | 158, 414, 451, 1037 |
| PspPPI | RGGWCCY | 1 cut(s) | 1037 |
| PsuI | RGATCY | 2 cut(s) | 118, 489 |
| RsaI | GTAC | 4 cut(s) | 33, 296, 661, 1325 |
| RsaNI | GTAC | 4 cut(s) | 32, 295, 660, 1324 |
| RseI | CAYNNNNRTG | 2 cut(s) | 522, 955 |
| SacI | GAGCTC | 1 cut(s) | 1362 |
| SapI | GCTCTTC | 1 cut(s) | 1350 |
| SaqAI | TTAA | 9 cut(s) | 72, 846, 909, 927, 981, 1089, 1148, 1199, 1248 |
| Sau3AI | GATC | 2 cut(s) | 118, 489 |
| Sau96I | GGNCC | 4 cut(s) | 158, 414, 451, 1037 |
| ScaI | AGTACT | 1 cut(s) | 33 |
| SchI | GAGTC | 3 cut(s) | 639, 821, 956 |
| ScrFI | CCNGG | 2 cut(s) | 92, 93 |
| SduI | GDGCHC | 2 cut(s) | 682, 1362 |
| SfaNI | GCATC | 3 cut(s) | 222, 751, 1093 |
| SinI | GGWCC | 3 cut(s) | 158, 414, 1037 |
| SmaI | CCCGGG | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 522, 955 |
| SmlI | CTYRAG | 3 cut(s) | 71, 647, 1247 |
| SmoI | CTYRAG | 3 cut(s) | 71, 647, 1247 |
| Sse9I | AATT | 7 cut(s) | 48, 66, 469, 715, 772, 1194, 1328 |
| SsiI | CCGC | 3 cut(s) | 329, 621, 1030 |
| SspI | AATATT | 2 cut(s) | 827, 1262 |
| SspMI | CTAG | 5 cut(s) | 99, 545, 606, 1320, 1352 |
| SstI | GAGCTC | 1 cut(s) | 1362 |
| StyD4I | CCNGG | 2 cut(s) | 90, 91 |
| StyI | CCWWGG | 1 cut(s) | 1319 |
| TaaI | ACNGT | 1 cut(s) | 1162 |
| TaiI | ACGT | 1 cut(s) | 1142 |
| TaqI | TCGA | 5 cut(s) | 265, 419, 995, 1067, 1314 |
| TasI | AATT | 7 cut(s) | 48, 66, 469, 715, 772, 1194, 1328 |
| TatI | WGTACW | 2 cut(s) | 31, 294 |
| TfiI | GAWTC | 3 cut(s) | 286, 421, 1285 |
| Tru1I | TTAA | 9 cut(s) | 72, 846, 909, 927, 981, 1089, 1148, 1199, 1248 |
| Tru9I | TTAA | 9 cut(s) | 72, 846, 909, 927, 981, 1089, 1148, 1199, 1248 |
| TseFI | GTSAC | 8 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268 |
| Tsp45I | GTSAC | 8 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268 |
| TspDTI | ATGAA | 4 cut(s) | 41, 650, 915, 1256 |
| TspMI | CCCGGG | 1 cut(s) | 91 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 460 |
| Vha464I | CTTAAG | 2 cut(s) | 71, 1247 |
| VpaK11BI | GGWCC | 3 cut(s) | 158, 414, 1037 |
| XapI | RAATTY | 3 cut(s) | 66, 1194, 1328 |
| XbaI | TCTAGA | 2 cut(s) | 544, 1351 |
| XmaI | CCCGGG | 1 cut(s) | 91 |
| XmaJI | CCTAGG | 1 cut(s) | 1319 |
| XspI | CTAG | 5 cut(s) | 99, 545, 606, 1320, 1352 |
| ZrmI | AGTACT | 1 cut(s) | 33 |