Zinc finger BED domain-containing protein RICESLEEPER
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 123 - 224 | 4.3e-14 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 71 |
| AciI | CCGC | 1 cut(s) | 86 |
| AclWI | GGATC | 3 cut(s) | 96, 539, 816 |
| AcoI | YGGCCR | 1 cut(s) | 278 |
| AcsI | RAATTY | 2 cut(s) | 199, 233 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 114, 664 |
| AgsI | TTSAA | 6 cut(s) | 143, 232, 355, 514, 747, 781 |
| AjiI | CACGTC | 1 cut(s) | 551 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 681, 713 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 727, 759 |
| AluBI | AGCT | 3 cut(s) | 245, 501, 623 |
| AluI | AGCT | 3 cut(s) | 245, 501, 623 |
| Alw26I | GTCTC | 3 cut(s) | 325, 425, 486 |
| AlwI | GGATC | 3 cut(s) | 96, 539, 816 |
| AoxI | GGCC | 1 cut(s) | 278 |
| ApoI | RAATTY | 2 cut(s) | 199, 233 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 787, 819 |
| AsuHPI | GGTGA | 3 cut(s) | 100, 272, 713 |
| AsuII | TTCGAA | 1 cut(s) | 79 |
| BalI | TGGCCA | 1 cut(s) | 280 |
| BanI | GGYRCC | 1 cut(s) | 71 |
| BccI | CCATC | 2 cut(s) | 35, 590 |
| BcoDI | GTCTC | 3 cut(s) | 325, 425, 486 |
| BfaI | CTAG | 3 cut(s) | 155, 192, 741 |
| BmcAI | AGTACT | 1 cut(s) | 391 |
| BmgBI | CACGTC | 1 cut(s) | 551 |
| BmiI | GGNNCC | 1 cut(s) | 73 |
| BmsI | GCATC | 1 cut(s) | 470 |
| Bpu14I | TTCGAA | 1 cut(s) | 79 |
| BpuEI | CTTGAG | 4 cut(s) | 349, 470, 581, 702 |
| BsaI | GGTCTC | 2 cut(s) | 325, 425 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 114, 664 |
| Bse118I | RCCGGY | 1 cut(s) | 283 |
| Bse3DI | GCAATG | 1 cut(s) | 528 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 114, 664 |
| BseMI | GCAATG | 1 cut(s) | 528 |
| BseMII | CTCAG | 1 cut(s) | 444 |
| BshFI | GGCC | 1 cut(s) | 280 |
| BshNI | GGYRCC | 1 cut(s) | 71 |
| BsiSI | CCGG | 1 cut(s) | 284 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 114, 664 |
| BsmAI | GTCTC | 3 cut(s) | 325, 425, 486 |
| BsnI | GGCC | 1 cut(s) | 280 |
| Bso31I | GGTCTC | 2 cut(s) | 325, 425 |
| Bsp119I | TTCGAA | 1 cut(s) | 79 |
| Bsp143I | GATC | 4 cut(s) | 101, 544, 643, 808 |
| BspACI | CCGC | 1 cut(s) | 86 |
| BspANI | GGCC | 1 cut(s) | 280 |
| BspCNI | CTCAG | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 73 |
| BspPI | GGATC | 3 cut(s) | 96, 539, 816 |
| BspT104I | TTCGAA | 1 cut(s) | 79 |
| BspT107I | GGYRCC | 1 cut(s) | 71 |
| BspTNI | GGTCTC | 2 cut(s) | 325, 425 |
| BsrDI | GCAATG | 1 cut(s) | 528 |
| BsrFI | RCCGGY | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 283 |
| BssMI | GATC | 4 cut(s) | 101, 544, 643, 808 |
| Bst4CI | ACNGT | 2 cut(s) | 382, 637 |
| Bst6I | CTCTTC | 1 cut(s) | 672 |
| BstBI | TTCGAA | 1 cut(s) | 79 |
| BstDEI | CTNAG | 1 cut(s) | 453 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 662 |
| BstKTI | GATC | 4 cut(s) | 104, 547, 646, 811 |
| BstMAI | GTCTC | 3 cut(s) | 325, 425, 486 |
| BstMBI | GATC | 4 cut(s) | 101, 544, 643, 808 |
| BstX2I | RGATCY | 1 cut(s) | 101 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 276 |
| BstYI | RGATCY | 1 cut(s) | 101 |
| BsuRI | GGCC | 1 cut(s) | 280 |
| BtrI | CACGTC | 1 cut(s) | 551 |
| Cfr10I | RCCGGY | 1 cut(s) | 283 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviJI | RGCY | 9 cut(s) | 14, 118, 169, 227, 245, 268, 280, 501, 623 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 118, 169, 227, 245, 268, 280, 501, 623 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 1 cut(s) | 453 |
| DpnI | GATC | 4 cut(s) | 103, 546, 645, 810 |
| DpnII | GATC | 4 cut(s) | 101, 544, 643, 808 |
| DraI | TTTAAA | 1 cut(s) | 130 |
| EaeI | YGGCCR | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 1 cut(s) | 672 |
| EarI | CTCTTC | 1 cut(s) | 672 |
| Eco31I | GGTCTC | 2 cut(s) | 325, 425 |
| Eco32I | GATATC | 1 cut(s) | 738 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 662 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoRV | GATATC | 1 cut(s) | 738 |
| FspBI | CTAG | 3 cut(s) | 155, 192, 741 |
| HaeIII | GGCC | 1 cut(s) | 280 |
| HapII | CCGG | 1 cut(s) | 284 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 2 cut(s) | 514, 586 |
| HpaII | CCGG | 1 cut(s) | 284 |
| HphI | GGTGA | 3 cut(s) | 100, 272, 713 |
| Hpy166II | GTNNAC | 1 cut(s) | 815 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 454 |
| Hpy188III | TCNNGA | 5 cut(s) | 211, 328, 542, 590, 806 |
| Hpy8I | GTNNAC | 1 cut(s) | 815 |
| HpyAV | CCTTC | 3 cut(s) | 349, 678, 781 |
| HpyCH4III | ACNGT | 2 cut(s) | 382, 637 |
| HpyCH4IV | ACGT | 1 cut(s) | 550 |
| HpyCH4V | TGCA | 4 cut(s) | 162, 427, 461, 472 |
| HpyF3I | CTNAG | 1 cut(s) | 453 |
| HpySE526I | ACGT | 1 cut(s) | 550 |
| Kzo9I | GATC | 4 cut(s) | 101, 544, 643, 808 |
| LmnI | GCTCC | 2 cut(s) | 310, 790 |
| LpnPI | CCDG | 1 cut(s) | 297 |
| LweI | GCATC | 1 cut(s) | 470 |
| MaeI | CTAG | 3 cut(s) | 155, 192, 741 |
| MaeII | ACGT | 1 cut(s) | 550 |
| MalI | GATC | 4 cut(s) | 103, 546, 645, 810 |
| MboI | GATC | 4 cut(s) | 101, 544, 643, 808 |
| MboII | GAAGA | 2 cut(s) | 70, 689 |
| MflI | RGATCY | 1 cut(s) | 101 |
| MlsI | TGGCCA | 1 cut(s) | 280 |
| MluCI | AATT | 4 cut(s) | 199, 233, 314, 370 |
| MluNI | TGGCCA | 1 cut(s) | 280 |
| MnlI | CCTC | 6 cut(s) | 84, 115, 667, 673, 697, 724 |
| Mox20I | TGGCCA | 1 cut(s) | 280 |
| MscI | TGGCCA | 1 cut(s) | 280 |
| MseI | TTAA | 1 cut(s) | 129 |
| Msp20I | TGGCCA | 1 cut(s) | 280 |
| MspI | CCGG | 1 cut(s) | 284 |
| NdeII | GATC | 4 cut(s) | 101, 544, 643, 808 |
| NlaIV | GGNNCC | 1 cut(s) | 73 |
| NspV | TTCGAA | 1 cut(s) | 79 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 817 |
| PfeI | GAWTC | 2 cut(s) | 514, 586 |
| PspN4I | GGNNCC | 1 cut(s) | 73 |
| PsuI | RGATCY | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| Sau3AI | GATC | 4 cut(s) | 101, 544, 643, 808 |
| ScaI | AGTACT | 1 cut(s) | 391 |
| SfaNI | GCATC | 1 cut(s) | 470 |
| SfuI | TTCGAA | 1 cut(s) | 79 |
| SmlI | CTYRAG | 4 cut(s) | 328, 485, 560, 717 |
| SmoI | CTYRAG | 4 cut(s) | 328, 485, 560, 717 |
| Sse9I | AATT | 4 cut(s) | 199, 233, 314, 370 |
| SsiI | CCGC | 1 cut(s) | 86 |
| SspMI | CTAG | 3 cut(s) | 155, 192, 741 |
| TaaI | ACNGT | 2 cut(s) | 382, 637 |
| TaiI | ACGT | 1 cut(s) | 553 |
| TaqI | TCGA | 1 cut(s) | 79 |
| TasI | AATT | 4 cut(s) | 199, 233, 314, 370 |
| TatI | WGTACW | 1 cut(s) | 389 |
| TfiI | GAWTC | 2 cut(s) | 514, 586 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TspDTI | ATGAA | 6 cut(s) | 71, 357, 374, 517, 620, 624 |
| TspGWI | ACGGA | 1 cut(s) | 776 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 662 |
| XapI | RAATTY | 2 cut(s) | 199, 233 |
| XspI | CTAG | 3 cut(s) | 155, 192, 741 |
| ZrmI | AGTACT | 1 cut(s) | 391 |