BED zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1152 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 736 |
| Acc36I | ACCTGC | 2 cut(s) | 740, 1174 |
| Acc65I | GGTACC | 1 cut(s) | 685 |
| AccB1I | GGYRCC | 1 cut(s) | 685 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1965 |
| AccBSI | CCGCTC | 1 cut(s) | 933 |
| AccI | GTMKAC | 2 cut(s) | 692, 1859 |
| AciI | CCGC | 4 cut(s) | 933, 1097, 1695, 1988 |
| AclWI | GGATC | 4 cut(s) | 1136, 1322, 1418, 1431 |
| AcoI | YGGCCR | 2 cut(s) | 331, 1696 |
| AcsI | RAATTY | 7 cut(s) | 325, 342, 555, 652, 1290, 1742, 2033 |
| AcuI | CTGAAG | 2 cut(s) | 963, 1031 |
| AcyI | GRCGYC | 1 cut(s) | 313 |
| AdeI | CACNNNGTG | 1 cut(s) | 418 |
| AfaI | GTAC | 4 cut(s) | 687, 1201, 1811, 1930 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 580, 1491, 1965 |
| AflIII | ACRYGT | 1 cut(s) | 1444 |
| AjnI | CCWGG | 4 cut(s) | 222, 559, 606, 1823 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 792, 824, 1240, 1272 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1415, 1447 |
| AluBI | AGCT | 9 cut(s) | 187, 279, 480, 722, 1009, 1035, 1341, 1406, 1609 |
| AluI | AGCT | 9 cut(s) | 187, 279, 480, 722, 1009, 1035, 1341, 1406, 1609 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| Alw26I | GTCTC | 1 cut(s) | 1786 |
| AlwI | GGATC | 4 cut(s) | 1136, 1322, 1418, 1431 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 607, 868, 1729, 1877 |
| AoxI | GGCC | 3 cut(s) | 331, 1696, 1944 |
| ApeKI | GCWGC | 5 cut(s) | 363, 1226, 1313, 1392, 1657 |
| ApoI | RAATTY | 7 cut(s) | 325, 342, 555, 652, 1290, 1742, 2033 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1865, 1897 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1743 |
| Asp718I | GGTACC | 1 cut(s) | 685 |
| AspLEI | GCGC | 2 cut(s) | 69, 1958 |
| AspS9I | GGNCC | 2 cut(s) | 1945, 1979 |
| AsuHPI | GGTGA | 3 cut(s) | 656, 716, 1487 |
| AsuII | TTCGAA | 1 cut(s) | 448 |
| AvaII | GGWCC | 1 cut(s) | 1979 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1793, 1826 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BamHI | GGATCC | 1 cut(s) | 1423 |
| BanI | GGYRCC | 1 cut(s) | 685 |
| BauI | CACGAG | 1 cut(s) | 888 |
| BbsI | GAAGAC | 1 cut(s) | 1773 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvI | GCAGC | 5 cut(s) | 350, 1238, 1325, 1379, 1644 |
| BccI | CCATC | 7 cut(s) | 210, 635, 779, 1630, 1646, 1751, 1822 |
| BceAI | ACGGC | 1 cut(s) | 1606 |
| BciT130I | CCWGG | 4 cut(s) | 224, 561, 608, 1825 |
| BciVI | GTATCC | 2 cut(s) | 414, 1126 |
| BclI | TGATCA | 2 cut(s) | 352, 1347 |
| BcoDI | GTCTC | 1 cut(s) | 1786 |
| BfaI | CTAG | 5 cut(s) | 42, 132, 1032, 1718, 2038 |
| BfmI | CTRYAG | 1 cut(s) | 1647 |
| BfuAI | ACCTGC | 2 cut(s) | 740, 1174 |
| BfuI | GTATCC | 2 cut(s) | 414, 1126 |
| BisI | GCNGC | 7 cut(s) | 364, 1098, 1227, 1314, 1393, 1658, 1696 |
| BlpI | GCTNAGC | 1 cut(s) | 854 |
| BlsI | GCNGC | 7 cut(s) | 365, 1099, 1228, 1315, 1394, 1659, 1697 |
| Bme1390I | CCNGG | 4 cut(s) | 224, 561, 608, 1825 |
| Bme18I | GGWCC | 1 cut(s) | 1979 |
| BmgT120I | GGNCC | 2 cut(s) | 1945, 1979 |
| BmiI | GGNNCC | 2 cut(s) | 687, 1425 |
| BmrFI | CCNGG | 4 cut(s) | 224, 561, 608, 1825 |
| BmrI | ACTGGG | 1 cut(s) | 230 |
| BmsI | GCATC | 7 cut(s) | 289, 757, 904, 1213, 1296, 1533, 1602 |
| BmuI | ACTGGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 1773 |
| BpmI | CTGGAG | 1 cut(s) | 1807 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 854 |
| Bpu14I | TTCGAA | 1 cut(s) | 448 |
| BpuEI | CTTGAG | 2 cut(s) | 643, 1961 |
| BsaBI | GATNNNNATC | 2 cut(s) | 747, 1725 |
| BsaHI | GRCGYC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 5 cut(s) | 222, 223, 607, 1427, 1959 |
| BsaWI | WCCGGW | 2 cut(s) | 1612, 1914 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 580, 1491, 1965 |
| Bse1I | ACTGG | 4 cut(s) | 181, 236, 292, 653 |
| Bse8I | GATNNNNATC | 2 cut(s) | 747, 1725 |
| BseBI | CCWGG | 4 cut(s) | 224, 561, 608, 1825 |
| BseDI | CCNNGG | 5 cut(s) | 222, 223, 607, 1427, 1959 |
| BseGI | GGATG | 1 cut(s) | 1833 |
| BseJI | GATNNNNATC | 2 cut(s) | 747, 1725 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 580, 1491, 1965 |
| BseMII | CTCAG | 5 cut(s) | 476, 868, 887, 911, 1640 |
| BseNI | ACTGG | 4 cut(s) | 181, 236, 292, 653 |
| BseXI | GCAGC | 5 cut(s) | 350, 1238, 1325, 1379, 1644 |
| BseYI | CCCAGC | 1 cut(s) | 54 |
| BshFI | GGCC | 3 cut(s) | 333, 1698, 1946 |
| BshNI | GGYRCC | 1 cut(s) | 685 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BsiSI | CCGG | 2 cut(s) | 1613, 1915 |
| BslFI | GGGAC | 2 cut(s) | 949, 1085 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 580, 1491, 1965 |
| BsmAI | GTCTC | 1 cut(s) | 1786 |
| BsmFI | GGGAC | 2 cut(s) | 949, 1085 |
| BsmI | GAATGC | 2 cut(s) | 1268, 1486 |
| BsnI | GGCC | 3 cut(s) | 333, 1698, 1946 |
| Bsp119I | TTCGAA | 1 cut(s) | 448 |
| Bsp1286I | GDGCHC | 1 cut(s) | 99 |
| Bsp1407I | TGTACA | 1 cut(s) | 1199 |
| Bsp143I | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 854 |
| BspACI | CCGC | 4 cut(s) | 933, 1097, 1695, 1988 |
| BspANI | GGCC | 3 cut(s) | 333, 1698, 1946 |
| BspCNI | CTCAG | 5 cut(s) | 475, 867, 888, 912, 1639 |
| BspHI | TCATGA | 2 cut(s) | 1519, 1596 |
| BspLI | GGNNCC | 2 cut(s) | 687, 1425 |
| BspMAI | CTGCAG | 1 cut(s) | 1651 |
| BspMI | ACCTGC | 2 cut(s) | 740, 1174 |
| BspPI | GGATC | 4 cut(s) | 1136, 1322, 1418, 1431 |
| BspT104I | TTCGAA | 1 cut(s) | 448 |
| BspT107I | GGYRCC | 1 cut(s) | 685 |
| BsrBI | CCGCTC | 1 cut(s) | 933 |
| BsrGI | TGTACA | 1 cut(s) | 1199 |
| BsrI | ACTGG | 4 cut(s) | 181, 236, 292, 653 |
| BssECI | CCNNGG | 5 cut(s) | 222, 223, 607, 1427, 1959 |
| BssMI | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| BssNI | GRCGYC | 1 cut(s) | 313 |
| BssSI | CACGAG | 1 cut(s) | 888 |
| BssT1I | CCWWGG | 1 cut(s) | 1959 |
| Bst2BI | CACGAG | 1 cut(s) | 888 |
| Bst2UI | CCWGG | 4 cut(s) | 224, 561, 608, 1825 |
| Bst4CI | ACNGT | 6 cut(s) | 580, 690, 1511, 1864, 1910, 1983 |
| Bst6I | CTCTTC | 3 cut(s) | 1532, 1648, 1728 |
| BstACI | GRCGYC | 1 cut(s) | 313 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 914 |
| BstAUI | TGTACA | 1 cut(s) | 1199 |
| BstBI | TTCGAA | 1 cut(s) | 448 |
| BstC8I | GCNNGC | 6 cut(s) | 139, 189, 193, 1126, 1311, 1700 |
| BstDEI | CTNAG | 6 cut(s) | 462, 854, 896, 920, 1065, 1626 |
| BstF5I | GGATG | 1 cut(s) | 1833 |
| BstHHI | GCGC | 2 cut(s) | 69, 1958 |
| BstKTI | GATC | 7 cut(s) | 355, 1144, 1330, 1350, 1426, 1525, 1723 |
| BstMAI | GTCTC | 1 cut(s) | 1786 |
| BstMBI | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 299, 914, 923 |
| BstNI | CCWGG | 4 cut(s) | 224, 561, 608, 1825 |
| BstNSI | RCATGY | 3 cut(s) | 853, 1313, 1448 |
| BstSCI | CCNGG | 4 cut(s) | 222, 559, 606, 1823 |
| BstSFI | CTRYAG | 1 cut(s) | 1647 |
| BstV1I | GCAGC | 5 cut(s) | 350, 1238, 1325, 1379, 1644 |
| BstV2I | GAAGAC | 1 cut(s) | 1773 |
| BstX2I | RGATCY | 1 cut(s) | 1423 |
| BstYI | RGATCY | 1 cut(s) | 1423 |
| BsuI | GTATCC | 2 cut(s) | 414, 1126 |
| BsuRI | GGCC | 3 cut(s) | 333, 1698, 1946 |
| BtsCI | GGATG | 1 cut(s) | 1833 |
| BtsI | GCAGTG | 2 cut(s) | 155, 452 |
| BtsIMutI | CAGTG | 6 cut(s) | 155, 174, 452, 556, 585, 917 |
| BveI | ACCTGC | 2 cut(s) | 740, 1174 |
| Cac8I | GCNNGC | 6 cut(s) | 139, 189, 193, 1126, 1311, 1700 |
| CaiI | CAGNNNCTG | 4 cut(s) | 607, 868, 1729, 1877 |
| CciI | TCATGA | 2 cut(s) | 1519, 1596 |
| CfoI | GCGC | 2 cut(s) | 69, 1958 |
| Cfr13I | GGNCC | 2 cut(s) | 1945, 1979 |
| CseI | GACGC | 1 cut(s) | 321 |
| Csp6I | GTAC | 4 cut(s) | 686, 1200, 1810, 1929 |
| CviQI | GTAC | 4 cut(s) | 686, 1200, 1810, 1929 |
| DdeI | CTNAG | 6 cut(s) | 462, 854, 896, 920, 1065, 1626 |
| DpnI | GATC | 7 cut(s) | 354, 1143, 1329, 1349, 1425, 1524, 1722 |
| DpnII | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| DraIII | CACNNNGTG | 1 cut(s) | 418 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 736 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 736 |
| EaeI | YGGCCR | 2 cut(s) | 331, 1696 |
| Eam1104I | CTCTTC | 3 cut(s) | 1532, 1648, 1728 |
| EarI | CTCTTC | 3 cut(s) | 1532, 1648, 1728 |
| Eco130I | CCWWGG | 1 cut(s) | 1959 |
| Eco32I | GATATC | 2 cut(s) | 1687, 1840 |
| Eco47I | GGWCC | 1 cut(s) | 1979 |
| Eco57I | CTGAAG | 2 cut(s) | 963, 1031 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1945 |
| EcoRI | GAATTC | 3 cut(s) | 555, 652, 2033 |
| EcoRII | CCWGG | 4 cut(s) | 222, 559, 606, 1823 |
| EcoRV | GATATC | 2 cut(s) | 1687, 1840 |
| EcoT14I | CCWWGG | 1 cut(s) | 1959 |
| EcoT22I | ATGCAT | 3 cut(s) | 399, 1270, 1311 |
| ErhI | CCWWGG | 1 cut(s) | 1959 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 813, 845, 1731, 1763 |
| FaqI | GGGAC | 2 cut(s) | 949, 1085 |
| FauI | CCCGC | 1 cut(s) | 926 |
| FauNDI | CATATG | 2 cut(s) | 1086, 1138 |
| FbaI | TGATCA | 2 cut(s) | 352, 1347 |
| FblI | GTMKAC | 2 cut(s) | 692, 1859 |
| Fnu4HI | GCNGC | 7 cut(s) | 364, 1098, 1227, 1314, 1393, 1658, 1696 |
| FokI | GGATG | 1 cut(s) | 1840 |
| Fsp4HI | GCNGC | 7 cut(s) | 364, 1098, 1227, 1314, 1393, 1658, 1696 |
| FspBI | CTAG | 5 cut(s) | 42, 132, 1032, 1718, 2038 |
| GlaI | GCGC | 2 cut(s) | 68, 1957 |
| GluI | GCNGC | 7 cut(s) | 364, 1098, 1227, 1314, 1393, 1658, 1696 |
| GsaI | CCCAGC | 1 cut(s) | 58 |
| GsuI | CTGGAG | 1 cut(s) | 1807 |
| HaeIII | GGCC | 3 cut(s) | 333, 1698, 1946 |
| HapII | CCGG | 2 cut(s) | 1613, 1915 |
| HgaI | GACGC | 1 cut(s) | 321 |
| HhaI | GCGC | 2 cut(s) | 69, 1958 |
| Hin1I | GRCGYC | 1 cut(s) | 313 |
| Hin6I | GCGC | 2 cut(s) | 67, 1956 |
| HinP1I | GCGC | 2 cut(s) | 67, 1956 |
| HincII | GTYRAC | 3 cut(s) | 1054, 1455, 1507 |
| HindII | GTYRAC | 3 cut(s) | 1054, 1455, 1507 |
| HindIII | AAGCTT | 1 cut(s) | 478 |
| HpaII | CCGG | 2 cut(s) | 1613, 1915 |
| HphI | GGTGA | 3 cut(s) | 656, 716, 1487 |
| Hpy166II | GTNNAC | 8 cut(s) | 583, 591, 693, 768, 1054, 1455, 1507, 1860 |
| Hpy8I | GTNNAC | 8 cut(s) | 583, 591, 693, 768, 1054, 1455, 1507, 1860 |
| Hpy99I | CGWCG | 2 cut(s) | 315, 1592 |
| HpyAV | CCTTC | 6 cut(s) | 478, 749, 1266, 1291, 1468, 1574 |
| HpyCH4III | ACNGT | 6 cut(s) | 580, 690, 1511, 1864, 1910, 1983 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 299, 914, 923 |
| HpyF3I | CTNAG | 6 cut(s) | 462, 854, 896, 920, 1065, 1626 |
| Hsp92I | GRCGYC | 1 cut(s) | 313 |
| HspAI | GCGC | 2 cut(s) | 67, 1956 |
| KpnI | GGTACC | 1 cut(s) | 689 |
| Ksp22I | TGATCA | 2 cut(s) | 352, 1347 |
| Kzo9I | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| LmnI | GCTCC | 2 cut(s) | 94, 284 |
| Lsp1109I | GCAGC | 5 cut(s) | 350, 1238, 1325, 1379, 1644 |
| LweI | GCATC | 7 cut(s) | 289, 757, 904, 1213, 1296, 1533, 1602 |
| MaeI | CTAG | 5 cut(s) | 42, 132, 1032, 1718, 2038 |
| MaeIII | GTNAC | 6 cut(s) | 644, 704, 864, 1237, 1910, 1983 |
| MalI | GATC | 7 cut(s) | 354, 1143, 1329, 1349, 1425, 1524, 1722 |
| MbiI | CCGCTC | 1 cut(s) | 933 |
| MboI | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| MfeI | CAATTG | 1 cut(s) | 105 |
| MflI | RGATCY | 1 cut(s) | 1423 |
| MhlI | GDGCHC | 1 cut(s) | 99 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| MlyI | GAGTC | 6 cut(s) | 256, 576, 907, 1460, 1868, 2018 |
| MmeI | TCCRAC | 2 cut(s) | 103, 1149 |
| MnlI | CCTC | 9 cut(s) | 21, 471, 620, 915, 1104, 1365, 1422, 1729, 1936 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| Mph1103I | ATGCAT | 3 cut(s) | 399, 1270, 1311 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1743 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 5 cut(s) | 672, 963, 1061, 1208, 1797 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspA1I | CMGCKG | 1 cut(s) | 1009 |
| MspI | CCGG | 2 cut(s) | 1613, 1915 |
| MspR9I | CCNGG | 4 cut(s) | 224, 561, 608, 1825 |
| MunI | CAATTG | 1 cut(s) | 105 |
| Mva1269I | GAATGC | 2 cut(s) | 1268, 1486 |
| MvaI | CCWGG | 4 cut(s) | 224, 561, 608, 1825 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 299, 914, 923 |
| NdeI | CATATG | 2 cut(s) | 1086, 1138 |
| NdeII | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| NlaIV | GGNNCC | 2 cut(s) | 687, 1425 |
| NmuCI | GTSAC | 2 cut(s) | 644, 704 |
| NsiI | ATGCAT | 3 cut(s) | 399, 1270, 1311 |
| NspI | RCATGY | 3 cut(s) | 853, 1313, 1448 |
| NspV | TTCGAA | 1 cut(s) | 448 |
| PaeI | GCATGC | 1 cut(s) | 1313 |
| PagI | TCATGA | 2 cut(s) | 1519, 1596 |
| PasI | CCCWGGG | 1 cut(s) | 223 |
| PciI | ACATGT | 1 cut(s) | 1444 |
| PctI | GAATGC | 2 cut(s) | 1268, 1486 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1743 |
| PfeI | GAWTC | 7 cut(s) | 432, 532, 541, 698, 983, 1633, 1969 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1965 |
| PfoI | TCCNGGA | 2 cut(s) | 559, 1823 |
| PkrI | GCNGC | 7 cut(s) | 365, 1099, 1228, 1315, 1394, 1659, 1697 |
| PleI | GAGTC | 6 cut(s) | 256, 575, 906, 1459, 1868, 2017 |
| PpsI | GAGTC | 6 cut(s) | 256, 575, 906, 1459, 1868, 2017 |
| PscI | ACATGT | 1 cut(s) | 1444 |
| PsiI | TTATAA | 1 cut(s) | 1152 |
| Psp6I | CCWGG | 4 cut(s) | 222, 559, 606, 1823 |
| PspFI | CCCAGC | 1 cut(s) | 54 |
| PspGI | CCWGG | 4 cut(s) | 222, 559, 606, 1823 |
| PspN4I | GGNNCC | 2 cut(s) | 687, 1425 |
| PspPI | GGNCC | 2 cut(s) | 1945, 1979 |
| PstI | CTGCAG | 1 cut(s) | 1651 |
| PstNI | CAGNNNCTG | 4 cut(s) | 607, 868, 1729, 1877 |
| PsuI | RGATCY | 1 cut(s) | 1423 |
| PvuII | CAGCTG | 1 cut(s) | 1009 |
| RsaI | GTAC | 4 cut(s) | 687, 1201, 1811, 1930 |
| RsaNI | GTAC | 4 cut(s) | 686, 1200, 1810, 1929 |
| SaqAI | TTAA | 5 cut(s) | 672, 963, 1061, 1208, 1797 |
| SatI | GCNGC | 7 cut(s) | 364, 1098, 1227, 1314, 1393, 1658, 1696 |
| Sau3AI | GATC | 7 cut(s) | 352, 1141, 1327, 1347, 1423, 1522, 1720 |
| Sau96I | GGNCC | 2 cut(s) | 1945, 1979 |
| SchI | GAGTC | 6 cut(s) | 256, 576, 907, 1460, 1868, 2018 |
| ScrFI | CCNGG | 4 cut(s) | 224, 561, 608, 1825 |
| SduI | GDGCHC | 1 cut(s) | 99 |
| SfaNI | GCATC | 7 cut(s) | 289, 757, 904, 1213, 1296, 1533, 1602 |
| SfcI | CTRYAG | 1 cut(s) | 1647 |
| SfuI | TTCGAA | 1 cut(s) | 448 |
| SinI | GGWCC | 1 cut(s) | 1979 |
| SmlI | CTYRAG | 2 cut(s) | 622, 1940 |
| SmoI | CTYRAG | 2 cut(s) | 622, 1940 |
| SphI | GCATGC | 1 cut(s) | 1313 |
| SsiI | CCGC | 4 cut(s) | 933, 1097, 1695, 1988 |
| SspI | AATATT | 1 cut(s) | 161 |
| SspMI | CTAG | 5 cut(s) | 42, 132, 1032, 1718, 2038 |
| StyD4I | CCNGG | 4 cut(s) | 222, 559, 606, 1823 |
| StyI | CCWWGG | 1 cut(s) | 1959 |
| TaaI | ACNGT | 6 cut(s) | 580, 690, 1511, 1864, 1910, 1983 |
| TaqI | TCGA | 4 cut(s) | 448, 794, 1221, 1755 |
| TatI | WGTACW | 1 cut(s) | 1199 |
| TauI | GCSGC | 2 cut(s) | 1100, 1698 |
| TfiI | GAWTC | 7 cut(s) | 432, 532, 541, 698, 983, 1633, 1969 |
| Tru1I | TTAA | 5 cut(s) | 672, 963, 1061, 1208, 1797 |
| Tru9I | TTAA | 5 cut(s) | 672, 963, 1061, 1208, 1797 |
| TscAI | CASTG | 6 cut(s) | 155, 181, 459, 556, 585, 924 |
| TseFI | GTSAC | 2 cut(s) | 644, 704 |
| TseI | GCWGC | 5 cut(s) | 363, 1226, 1313, 1392, 1657 |
| Tsp45I | GTSAC | 2 cut(s) | 644, 704 |
| TspRI | CASTG | 6 cut(s) | 155, 181, 459, 556, 585, 924 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1965 |
| VpaK11BI | GGWCC | 1 cut(s) | 1979 |
| XapI | RAATTY | 7 cut(s) | 325, 342, 555, 652, 1290, 1742, 2033 |
| XceI | RCATGY | 3 cut(s) | 853, 1313, 1448 |
| XmiI | GTMKAC | 2 cut(s) | 692, 1859 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1743 |
| XspI | CTAG | 5 cut(s) | 42, 132, 1032, 1718, 2038 |
| Zsp2I | ATGCAT | 3 cut(s) | 399, 1270, 1311 |