Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 285 - 397 | 7.6e-14 | hAT-like transposase, RNase-H fold |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 600 |
| AciI | CCGC | 3 cut(s) | 800, 1138, 1394 |
| AclWI | GGATC | 3 cut(s) | 553, 1057, 1064 |
| AcoI | YGGCCR | 1 cut(s) | 477 |
| AcsI | RAATTY | 6 cut(s) | 37, 136, 235, 604, 733, 1004 |
| AcuI | CTGAAG | 1 cut(s) | 254 |
| AdeI | CACNNNGTG | 1 cut(s) | 600 |
| AfaI | GTAC | 2 cut(s) | 398, 415 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 569, 600, 657, 680, 767 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 723, 755 |
| AluBI | AGCT | 5 cut(s) | 629, 925, 1084, 1242, 1327 |
| AluI | AGCT | 5 cut(s) | 629, 925, 1084, 1242, 1327 |
| Alw26I | GTCTC | 1 cut(s) | 451 |
| AlwI | GGATC | 3 cut(s) | 553, 1057, 1064 |
| AoxI | GGCC | 5 cut(s) | 477, 758, 770, 866, 1203 |
| ApeKI | GCWGC | 5 cut(s) | 314, 317, 629, 647, 1275 |
| ApoI | RAATTY | 6 cut(s) | 37, 136, 235, 604, 733, 1004 |
| AspS9I | GGNCC | 5 cut(s) | 10, 770, 867, 999, 1204 |
| AsuHPI | GGTGA | 2 cut(s) | 504, 505 |
| AvaII | GGWCC | 2 cut(s) | 10, 999 |
| BalI | TGGCCA | 1 cut(s) | 479 |
| BauI | CACGAG | 1 cut(s) | 595 |
| BbsI | GAAGAC | 2 cut(s) | 501, 1291 |
| BbvI | GCAGC | 5 cut(s) | 326, 329, 616, 659, 1287 |
| BccI | CCATC | 4 cut(s) | 305, 655, 722, 784 |
| BcoDI | GTCTC | 1 cut(s) | 451 |
| BfaI | CTAG | 2 cut(s) | 762, 1074 |
| BfmI | CTRYAG | 2 cut(s) | 94, 1376 |
| BisI | GCNGC | 5 cut(s) | 315, 318, 630, 648, 1276 |
| BlsI | GCNGC | 5 cut(s) | 316, 319, 631, 649, 1277 |
| Bme18I | GGWCC | 2 cut(s) | 10, 999 |
| BmgT120I | GGNCC | 5 cut(s) | 10, 770, 867, 999, 1204 |
| BmiI | GGNNCC | 4 cut(s) | 12, 741, 771, 1206 |
| BmsI | GCATC | 1 cut(s) | 1393 |
| BpiI | GAAGAC | 2 cut(s) | 501, 1291 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1085 |
| BsaAI | YACGTR | 1 cut(s) | 1160 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1038 |
| BsaJI | CCNNGG | 1 cut(s) | 1044 |
| BsaWI | WCCGGW | 2 cut(s) | 673, 1405 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1400 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 569, 600, 657, 680, 767 |
| Bse118I | RCCGGY | 1 cut(s) | 1271 |
| Bse1I | ACTGG | 1 cut(s) | 555 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1038 |
| BseDI | CCNNGG | 1 cut(s) | 1044 |
| BseGI | GGATG | 4 cut(s) | 592, 666, 733, 790 |
| BseJI | GATNNNNATC | 1 cut(s) | 1038 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 569, 600, 657, 680, 767 |
| BseMII | CTCAG | 1 cut(s) | 1314 |
| BseNI | ACTGG | 1 cut(s) | 555 |
| BseRI | GAGGAG | 1 cut(s) | 680 |
| BseXI | GCAGC | 5 cut(s) | 326, 329, 616, 659, 1287 |
| BsgI | GTGCAG | 1 cut(s) | 833 |
| BshFI | GGCC | 5 cut(s) | 479, 760, 772, 868, 1205 |
| BsiSI | CCGG | 3 cut(s) | 674, 1272, 1406 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 569, 600, 657, 680, 767 |
| BsmAI | GTCTC | 1 cut(s) | 451 |
| BsnI | GGCC | 5 cut(s) | 479, 760, 772, 868, 1205 |
| Bsp143I | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| BspACI | CCGC | 3 cut(s) | 800, 1138, 1394 |
| BspANI | GGCC | 5 cut(s) | 479, 760, 772, 868, 1205 |
| BspCNI | CTCAG | 1 cut(s) | 1315 |
| BspHI | TCATGA | 1 cut(s) | 889 |
| BspLI | GGNNCC | 4 cut(s) | 12, 741, 771, 1206 |
| BspPI | GGATC | 3 cut(s) | 553, 1057, 1064 |
| BspQI | GCTCTTC | 1 cut(s) | 932 |
| BsrFI | RCCGGY | 1 cut(s) | 1271 |
| BsrI | ACTGG | 1 cut(s) | 555 |
| BssAI | RCCGGY | 1 cut(s) | 1271 |
| BssECI | CCNNGG | 1 cut(s) | 1044 |
| BssMI | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| BssSI | CACGAG | 1 cut(s) | 595 |
| BssT1I | CCWWGG | 1 cut(s) | 1044 |
| Bst2BI | CACGAG | 1 cut(s) | 595 |
| Bst4CI | ACNGT | 4 cut(s) | 304, 680, 1261, 1380 |
| Bst6I | CTCTTC | 5 cut(s) | 449, 708, 932, 1179, 1211 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 653 |
| BstBAI | YACGTR | 1 cut(s) | 1160 |
| BstC8I | GCNNGC | 1 cut(s) | 923 |
| BstDEI | CTNAG | 5 cut(s) | 385, 821, 845, 1085, 1323 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 567, 655 |
| BstF5I | GGATG | 4 cut(s) | 592, 666, 733, 790 |
| BstKTI | GATC | 4 cut(s) | 470, 561, 1065, 1072 |
| BstMAI | GTCTC | 1 cut(s) | 451 |
| BstMBI | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 653, 1275 |
| BstNSI | RCATGY | 4 cut(s) | 403, 407, 543, 1094 |
| BstSFI | CTRYAG | 2 cut(s) | 94, 1376 |
| BstV1I | GCAGC | 5 cut(s) | 326, 329, 616, 659, 1287 |
| BstV2I | GAAGAC | 2 cut(s) | 501, 1291 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| BsuRI | GGCC | 5 cut(s) | 479, 760, 772, 868, 1205 |
| BtsCI | GGATG | 4 cut(s) | 592, 666, 733, 790 |
| BtsIMutI | CAGTG | 5 cut(s) | 111, 278, 477, 685, 1257 |
| Cac8I | GCNNGC | 1 cut(s) | 923 |
| CciI | TCATGA | 1 cut(s) | 889 |
| Cfr10I | RCCGGY | 1 cut(s) | 1271 |
| Cfr13I | GGNCC | 5 cut(s) | 10, 770, 867, 999, 1204 |
| Csp6I | GTAC | 2 cut(s) | 397, 414 |
| CviAII | CATG | 8 cut(s) | 148, 261, 400, 404, 540, 890, 1091, 1349 |
| CviQI | GTAC | 2 cut(s) | 397, 414 |
| DdeI | CTNAG | 5 cut(s) | 385, 821, 845, 1085, 1323 |
| DpnI | GATC | 4 cut(s) | 469, 560, 1064, 1071 |
| DpnII | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| DraIII | CACNNNGTG | 1 cut(s) | 600 |
| EaeI | YGGCCR | 1 cut(s) | 477 |
| Eam1104I | CTCTTC | 5 cut(s) | 449, 708, 932, 1179, 1211 |
| EarI | CTCTTC | 5 cut(s) | 449, 708, 932, 1179, 1211 |
| EciI | GGCGGA | 1 cut(s) | 815 |
| Eco130I | CCWWGG | 1 cut(s) | 1044 |
| Eco147I | AGGCCT | 1 cut(s) | 760 |
| Eco47I | GGWCC | 2 cut(s) | 10, 999 |
| Eco57I | CTGAAG | 1 cut(s) | 254 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 567, 655 |
| EcoO109I | RGGNCCY | 3 cut(s) | 10, 770, 1204 |
| EcoRI | GAATTC | 2 cut(s) | 235, 604 |
| EcoT14I | CCWWGG | 1 cut(s) | 1044 |
| EcoT22I | ATGCAT | 2 cut(s) | 192, 405 |
| ErhI | CCWWGG | 1 cut(s) | 1044 |
| FaeI | CATG | 8 cut(s) | 151, 264, 403, 407, 543, 893, 1094, 1352 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1231, 1263, 1276, 1308 |
| FatI | CATG | 8 cut(s) | 147, 260, 399, 403, 539, 889, 1090, 1348 |
| Fnu4HI | GCNGC | 5 cut(s) | 315, 318, 630, 648, 1276 |
| FokI | GGATG | 4 cut(s) | 599, 673, 740, 797 |
| Fsp4HI | GCNGC | 5 cut(s) | 315, 318, 630, 648, 1276 |
| FspBI | CTAG | 2 cut(s) | 762, 1074 |
| GluI | GCNGC | 5 cut(s) | 315, 318, 630, 648, 1276 |
| HaeIII | GGCC | 5 cut(s) | 479, 760, 772, 868, 1205 |
| HapII | CCGG | 3 cut(s) | 674, 1272, 1406 |
| Hin1II | CATG | 8 cut(s) | 151, 264, 403, 407, 543, 893, 1094, 1352 |
| HinfI | GANTC | 6 cut(s) | 257, 377, 908, 1039, 1077, 1390 |
| HpaII | CCGG | 3 cut(s) | 674, 1272, 1406 |
| HphI | GGTGA | 2 cut(s) | 504, 505 |
| Hpy166II | GTNNAC | 1 cut(s) | 414 |
| Hpy188I | TCNGA | 4 cut(s) | 781, 913, 1324, 1389 |
| Hpy188III | TCNNGA | 2 cut(s) | 890, 1031 |
| Hpy8I | GTNNAC | 1 cut(s) | 414 |
| Hpy99I | CGWCG | 1 cut(s) | 1153 |
| HpyAV | CCTTC | 2 cut(s) | 961, 1109 |
| HpyCH4III | ACNGT | 4 cut(s) | 304, 680, 1261, 1380 |
| HpyCH4IV | ACGT | 1 cut(s) | 1159 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 653, 1275 |
| HpyF3I | CTNAG | 5 cut(s) | 385, 821, 845, 1085, 1323 |
| HpySE526I | ACGT | 1 cut(s) | 1159 |
| Hsp92II | CATG | 8 cut(s) | 151, 264, 403, 407, 543, 893, 1094, 1352 |
| Kzo9I | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| LguI | GCTCTTC | 1 cut(s) | 932 |
| LmnI | GCTCC | 1 cut(s) | 667 |
| Lsp1109I | GCAGC | 5 cut(s) | 326, 329, 616, 659, 1287 |
| LweI | GCATC | 1 cut(s) | 1393 |
| MaeI | CTAG | 2 cut(s) | 762, 1074 |
| MaeII | ACGT | 1 cut(s) | 1159 |
| MaeIII | GTNAC | 4 cut(s) | 838, 1093, 1155, 1261 |
| MalI | GATC | 4 cut(s) | 469, 560, 1064, 1071 |
| MboI | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MlsI | TGGCCA | 1 cut(s) | 479 |
| MluNI | TGGCCA | 1 cut(s) | 479 |
| MlyI | GAGTC | 2 cut(s) | 266, 1399 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| Mox20I | TGGCCA | 1 cut(s) | 479 |
| Mph1103I | ATGCAT | 2 cut(s) | 192, 405 |
| MscI | TGGCCA | 1 cut(s) | 479 |
| MseI | TTAA | 6 cut(s) | 6, 33, 293, 357, 534, 617 |
| Msp20I | TGGCCA | 1 cut(s) | 479 |
| MspI | CCGG | 3 cut(s) | 674, 1272, 1406 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 653, 1275 |
| NdeII | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| NlaIII | CATG | 8 cut(s) | 151, 264, 403, 407, 543, 893, 1094, 1352 |
| NlaIV | GGNNCC | 4 cut(s) | 12, 741, 771, 1206 |
| NsiI | ATGCAT | 2 cut(s) | 192, 405 |
| NspI | RCATGY | 4 cut(s) | 403, 407, 543, 1094 |
| PagI | TCATGA | 1 cut(s) | 889 |
| PceI | AGGCCT | 1 cut(s) | 760 |
| PciSI | GCTCTTC | 1 cut(s) | 932 |
| PfeI | GAWTC | 4 cut(s) | 377, 908, 1039, 1077 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 600 |
| PkrI | GCNGC | 5 cut(s) | 316, 319, 631, 649, 1277 |
| PleI | GAGTC | 2 cut(s) | 265, 1398 |
| PpsI | GAGTC | 2 cut(s) | 265, 1398 |
| Ppu21I | YACGTR | 1 cut(s) | 1160 |
| PpuMI | RGGWCCY | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 4 cut(s) | 12, 741, 771, 1206 |
| PspPI | GGNCC | 5 cut(s) | 10, 770, 867, 999, 1204 |
| PspPPI | RGGWCCY | 1 cut(s) | 10 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| RsaI | GTAC | 2 cut(s) | 398, 415 |
| RsaNI | GTAC | 2 cut(s) | 397, 414 |
| SapI | GCTCTTC | 1 cut(s) | 932 |
| SaqAI | TTAA | 6 cut(s) | 6, 33, 293, 357, 534, 617 |
| SatI | GCNGC | 5 cut(s) | 315, 318, 630, 648, 1276 |
| Sau3AI | GATC | 4 cut(s) | 467, 558, 1062, 1069 |
| Sau96I | GGNCC | 5 cut(s) | 10, 770, 867, 999, 1204 |
| SchI | GAGTC | 2 cut(s) | 266, 1399 |
| SfaNI | GCATC | 1 cut(s) | 1393 |
| SfcI | CTRYAG | 2 cut(s) | 94, 1376 |
| SinI | GGWCC | 2 cut(s) | 10, 999 |
| SseBI | AGGCCT | 1 cut(s) | 760 |
| SsiI | CCGC | 3 cut(s) | 800, 1138, 1394 |
| SspMI | CTAG | 2 cut(s) | 762, 1074 |
| StuI | AGGCCT | 1 cut(s) | 760 |
| StyI | CCWWGG | 1 cut(s) | 1044 |
| TaaI | ACNGT | 4 cut(s) | 304, 680, 1261, 1380 |
| TaiI | ACGT | 1 cut(s) | 1162 |
| TaqI | TCGA | 1 cut(s) | 906 |
| TatI | WGTACW | 2 cut(s) | 396, 413 |
| TfiI | GAWTC | 4 cut(s) | 377, 908, 1039, 1077 |
| Tru1I | TTAA | 6 cut(s) | 6, 33, 293, 357, 534, 617 |
| Tru9I | TTAA | 6 cut(s) | 6, 33, 293, 357, 534, 617 |
| TscAI | CASTG | 5 cut(s) | 118, 278, 477, 685, 1264 |
| TseI | GCWGC | 5 cut(s) | 314, 317, 629, 647, 1275 |
| TspDTI | ATGAA | 8 cut(s) | 801, 849, 878, 919, 997, 1128, 1197, 1365 |
| TspGWI | ACGGA | 1 cut(s) | 1166 |
| TspRI | CASTG | 5 cut(s) | 118, 278, 477, 685, 1264 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 600 |
| VpaK11BI | GGWCC | 2 cut(s) | 10, 999 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 567, 655 |
| XapI | RAATTY | 6 cut(s) | 37, 136, 235, 604, 733, 1004 |
| XceI | RCATGY | 4 cut(s) | 403, 407, 543, 1094 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 487 |
| XspI | CTAG | 2 cut(s) | 762, 1074 |
| Zsp2I | ATGCAT | 2 cut(s) | 192, 405 |