Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 187 - 268 | 1.1e-26 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 260 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 17, 387 |
| AclWI | GGATC | 3 cut(s) | 712, 737, 750 |
| AcsI | RAATTY | 5 cut(s) | 179, 214, 521, 583, 761 |
| AdeI | CACNNNGTG | 1 cut(s) | 387 |
| AfaI | GTAC | 4 cut(s) | 267, 284, 333, 752 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 387, 495 |
| AgsI | TTSAA | 7 cut(s) | 148, 214, 227, 238, 582, 626, 692 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 556, 588 |
| AluBI | AGCT | 3 cut(s) | 32, 714, 787 |
| AluI | AGCT | 3 cut(s) | 32, 714, 787 |
| Alw21I | GWGCWC | 1 cut(s) | 205 |
| Alw26I | GTCTC | 3 cut(s) | 361, 631, 652 |
| AlwI | GGATC | 3 cut(s) | 712, 737, 750 |
| Ama87I | CYCGRG | 1 cut(s) | 802 |
| AoxI | GGCC | 1 cut(s) | 774 |
| ApoI | RAATTY | 5 cut(s) | 179, 214, 521, 583, 761 |
| AspS9I | GGNCC | 1 cut(s) | 774 |
| AvaI | CYCGRG | 1 cut(s) | 802 |
| BaeGI | GKGCMC | 1 cut(s) | 381 |
| BamHI | GGATCC | 1 cut(s) | 742 |
| Bbv12I | GWGCWC | 1 cut(s) | 205 |
| BccI | CCATC | 4 cut(s) | 224, 490, 641, 733 |
| BciVI | GTATCC | 1 cut(s) | 582 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BcoDI | GTCTC | 3 cut(s) | 361, 631, 652 |
| BfaI | CTAG | 2 cut(s) | 29, 384 |
| BfmI | CTRYAG | 1 cut(s) | 778 |
| BfuI | GTATCC | 1 cut(s) | 582 |
| BmeT110I | CYCGRG | 1 cut(s) | 802 |
| BmgT120I | GGNCC | 1 cut(s) | 774 |
| BmiI | GGNNCC | 2 cut(s) | 565, 744 |
| BmsI | GCATC | 2 cut(s) | 113, 285 |
| BsaAI | YACGTR | 1 cut(s) | 269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 3 cut(s) | 597, 721, 746 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 387, 495 |
| Bse8I | GATNNNNATC | 1 cut(s) | 238 |
| BseDI | CCNNGG | 3 cut(s) | 597, 721, 746 |
| BseJI | GATNNNNATC | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 387, 495 |
| BseSI | GKGCMC | 1 cut(s) | 381 |
| BshFI | GGCC | 1 cut(s) | 776 |
| BsiHKAI | GWGCWC | 1 cut(s) | 205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 802 |
| BslFI | GGGAC | 1 cut(s) | 512 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 387, 495 |
| BsmAI | GTCTC | 3 cut(s) | 361, 631, 652 |
| BsmBI | CGTCTC | 1 cut(s) | 652 |
| BsmFI | GGGAC | 1 cut(s) | 512 |
| BsnI | GGCC | 1 cut(s) | 776 |
| BsoBI | CYCGRG | 1 cut(s) | 802 |
| Bsp1286I | GDGCHC | 2 cut(s) | 205, 381 |
| Bsp1407I | TGTACA | 1 cut(s) | 331 |
| Bsp143I | GATC | 4 cut(s) | 39, 247, 717, 742 |
| BspANI | GGCC | 1 cut(s) | 776 |
| BspHI | TCATGA | 1 cut(s) | 654 |
| BspLI | GGNNCC | 2 cut(s) | 565, 744 |
| BspPI | GGATC | 3 cut(s) | 712, 737, 750 |
| BsrGI | TGTACA | 1 cut(s) | 331 |
| BssECI | CCNNGG | 3 cut(s) | 597, 721, 746 |
| BssMI | GATC | 4 cut(s) | 39, 247, 717, 742 |
| BssT1I | CCWWGG | 2 cut(s) | 597, 721 |
| Bst6I | CTCTTC | 1 cut(s) | 352 |
| BstAUI | TGTACA | 1 cut(s) | 331 |
| BstBAI | YACGTR | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 1 cut(s) | 785 |
| BstKTI | GATC | 4 cut(s) | 42, 250, 720, 745 |
| BstMAI | GTCTC | 3 cut(s) | 361, 631, 652 |
| BstMBI | GATC | 4 cut(s) | 39, 247, 717, 742 |
| BstSFI | CTRYAG | 1 cut(s) | 778 |
| BstSLI | GKGCMC | 1 cut(s) | 381 |
| BstX2I | RGATCY | 1 cut(s) | 742 |
| BstYI | RGATCY | 1 cut(s) | 742 |
| BsuI | GTATCC | 1 cut(s) | 582 |
| BsuRI | GGCC | 1 cut(s) | 776 |
| Cac8I | GCNNGC | 1 cut(s) | 785 |
| CciI | TCATGA | 1 cut(s) | 654 |
| Cfr13I | GGNCC | 1 cut(s) | 774 |
| Csp6I | GTAC | 4 cut(s) | 266, 283, 332, 751 |
| CviAII | CATG | 3 cut(s) | 188, 634, 655 |
| CviJI | RGCY | 7 cut(s) | 32, 160, 632, 651, 714, 776, 787 |
| CviKI_1 | RGCY | 7 cut(s) | 32, 160, 632, 651, 714, 776, 787 |
| CviQI | GTAC | 4 cut(s) | 266, 283, 332, 751 |
| DpnI | GATC | 4 cut(s) | 41, 249, 719, 744 |
| DpnII | GATC | 4 cut(s) | 39, 247, 717, 742 |
| DraIII | CACNNNGTG | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 1 cut(s) | 352 |
| EarI | CTCTTC | 1 cut(s) | 352 |
| Eco130I | CCWWGG | 2 cut(s) | 597, 721 |
| Eco88I | CYCGRG | 1 cut(s) | 802 |
| EcoT14I | CCWWGG | 2 cut(s) | 597, 721 |
| EcoT22I | ATGCAT | 1 cut(s) | 106 |
| ErhI | CCWWGG | 2 cut(s) | 597, 721 |
| Esp3I | CGTCTC | 1 cut(s) | 652 |
| FaeI | CATG | 3 cut(s) | 191, 637, 658 |
| FaqI | GGGAC | 1 cut(s) | 512 |
| FatI | CATG | 3 cut(s) | 187, 633, 654 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| FspBI | CTAG | 2 cut(s) | 29, 384 |
| HaeIII | GGCC | 1 cut(s) | 776 |
| Hin1II | CATG | 3 cut(s) | 191, 637, 658 |
| HinfI | GANTC | 1 cut(s) | 116 |
| Hpy166II | GTNNAC | 1 cut(s) | 799 |
| Hpy188I | TCNGA | 1 cut(s) | 706 |
| Hpy188III | TCNNGA | 5 cut(s) | 211, 227, 488, 561, 655 |
| Hpy8I | GTNNAC | 1 cut(s) | 799 |
| Hpy99I | CGWCG | 1 cut(s) | 435 |
| HpyCH4IV | ACGT | 1 cut(s) | 268 |
| HpyCH4V | TGCA | 6 cut(s) | 104, 276, 419, 437, 452, 731 |
| HpySE526I | ACGT | 1 cut(s) | 268 |
| Hsp92II | CATG | 3 cut(s) | 191, 637, 658 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 4 cut(s) | 39, 247, 717, 742 |
| LpnPI | CCDG | 2 cut(s) | 546, 626 |
| LweI | GCATC | 2 cut(s) | 113, 285 |
| MaeI | CTAG | 2 cut(s) | 29, 384 |
| MaeII | ACGT | 1 cut(s) | 268 |
| MaeIII | GTNAC | 2 cut(s) | 458, 544 |
| MalI | GATC | 4 cut(s) | 41, 249, 719, 744 |
| MboI | GATC | 4 cut(s) | 39, 247, 717, 742 |
| MboII | GAAGA | 2 cut(s) | 369, 523 |
| MfeI | CAATTG | 2 cut(s) | 143, 732 |
| MflI | RGATCY | 1 cut(s) | 742 |
| MhlI | GDGCHC | 2 cut(s) | 205, 381 |
| MmeI | TCCRAC | 1 cut(s) | 684 |
| MnlI | CCTC | 6 cut(s) | 15, 149, 341, 353, 535, 756 |
| Mph1103I | ATGCAT | 1 cut(s) | 106 |
| MseI | TTAA | 6 cut(s) | 170, 218, 288, 444, 455, 471 |
| MslI | CAYNNNNRTG | 2 cut(s) | 52, 645 |
| MunI | CAATTG | 2 cut(s) | 143, 732 |
| NdeII | GATC | 4 cut(s) | 39, 247, 717, 742 |
| NlaIII | CATG | 3 cut(s) | 191, 637, 658 |
| NlaIV | GGNNCC | 2 cut(s) | 565, 744 |
| NmuCI | GTSAC | 2 cut(s) | 458, 544 |
| NsiI | ATGCAT | 1 cut(s) | 106 |
| PaeR7I | CTCGAG | 1 cut(s) | 802 |
| PagI | TCATGA | 1 cut(s) | 654 |
| PfeI | GAWTC | 1 cut(s) | 116 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 17, 387 |
| Ppu21I | YACGTR | 1 cut(s) | 269 |
| PsiI | TTATAA | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 2 cut(s) | 565, 744 |
| PspPI | GGNCC | 1 cut(s) | 774 |
| PspXI | VCTCGAGB | 1 cut(s) | 802 |
| PsuI | RGATCY | 1 cut(s) | 742 |
| RsaI | GTAC | 4 cut(s) | 267, 284, 333, 752 |
| RsaNI | GTAC | 4 cut(s) | 266, 283, 332, 751 |
| RseI | CAYNNNNRTG | 2 cut(s) | 52, 645 |
| SaqAI | TTAA | 6 cut(s) | 170, 218, 288, 444, 455, 471 |
| Sau3AI | GATC | 4 cut(s) | 39, 247, 717, 742 |
| Sau96I | GGNCC | 1 cut(s) | 774 |
| SduI | GDGCHC | 2 cut(s) | 205, 381 |
| SfaNI | GCATC | 2 cut(s) | 113, 285 |
| SfcI | CTRYAG | 1 cut(s) | 778 |
| Sfr274I | CTCGAG | 1 cut(s) | 802 |
| SlaI | CTCGAG | 1 cut(s) | 802 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 52, 645 |
| SmlI | CTYRAG | 1 cut(s) | 802 |
| SmoI | CTYRAG | 1 cut(s) | 802 |
| SspI | AATATT | 1 cut(s) | 698 |
| SspMI | CTAG | 2 cut(s) | 29, 384 |
| StyI | CCWWGG | 2 cut(s) | 597, 721 |
| TaiI | ACGT | 1 cut(s) | 271 |
| TaqI | TCGA | 4 cut(s) | 86, 193, 411, 803 |
| TatI | WGTACW | 2 cut(s) | 282, 331 |
| TfiI | GAWTC | 1 cut(s) | 116 |
| Tru1I | TTAA | 6 cut(s) | 170, 218, 288, 444, 455, 471 |
| Tru9I | TTAA | 6 cut(s) | 170, 218, 288, 444, 455, 471 |
| TseFI | GTSAC | 2 cut(s) | 458, 544 |
| Tsp45I | GTSAC | 2 cut(s) | 458, 544 |
| TspDTI | ATGAA | 6 cut(s) | 36, 108, 507, 643, 692, 698 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 17, 387 |
| XapI | RAATTY | 5 cut(s) | 179, 214, 521, 583, 761 |
| XhoI | CTCGAG | 1 cut(s) | 802 |
| XspI | CTAG | 2 cut(s) | 29, 384 |
| Zsp2I | ATGCAT | 1 cut(s) | 106 |