Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 93 - 198 | 1.3e-20 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 150 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 829 |
| AccB1I | GGYRCC | 1 cut(s) | 104 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 614 |
| AclWI | GGATC | 2 cut(s) | 467, 819 |
| AcsI | RAATTY | 3 cut(s) | 407, 599, 713 |
| AfaI | GTAC | 2 cut(s) | 309, 419 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AflIII | ACRYGT | 1 cut(s) | 40 |
| AgsI | TTSAA | 3 cut(s) | 69, 285, 701 |
| AhlI | ACTAGT | 1 cut(s) | 251 |
| AluBI | AGCT | 8 cut(s) | 30, 137, 403, 448, 568, 580, 635, 734 |
| AluI | AGCT | 8 cut(s) | 30, 137, 403, 448, 568, 580, 635, 734 |
| AlwI | GGATC | 2 cut(s) | 467, 819 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| ApoI | RAATTY | 3 cut(s) | 407, 599, 713 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 1 cut(s) | 832 |
| BaeGI | GKGCMC | 1 cut(s) | 145 |
| BanI | GGYRCC | 1 cut(s) | 104 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 476, 508 |
| BbvCI | CCTCAGC | 1 cut(s) | 801 |
| BbvI | GCAGC | 1 cut(s) | 331 |
| BccI | CCATC | 4 cut(s) | 164, 266, 656, 780 |
| BclI | TGATCA | 1 cut(s) | 780 |
| BcuI | ACTAGT | 1 cut(s) | 251 |
| BfaI | CTAG | 2 cut(s) | 237, 252 |
| BisI | GCNGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 346 |
| BmcAI | AGTACT | 2 cut(s) | 309, 419 |
| BmiI | GGNNCC | 2 cut(s) | 6, 106 |
| BmrI | ACTGGG | 1 cut(s) | 430 |
| BmsI | GCATC | 3 cut(s) | 280, 358, 870 |
| BmuI | ACTGGG | 1 cut(s) | 430 |
| Bpu10I | CCTNAGC | 1 cut(s) | 801 |
| BpuEI | CTTGAG | 1 cut(s) | 540 |
| BsaJI | CCNNGG | 1 cut(s) | 608 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse118I | RCCGGY | 1 cut(s) | 7 |
| Bse1I | ACTGG | 3 cut(s) | 80, 328, 425 |
| Bse3DI | GCAATG | 2 cut(s) | 625, 843 |
| BseDI | CCNNGG | 1 cut(s) | 608 |
| BseGI | GGATG | 3 cut(s) | 76, 175, 373 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseMI | GCAATG | 2 cut(s) | 625, 843 |
| BseMII | CTCAG | 1 cut(s) | 792 |
| BseNI | ACTGG | 3 cut(s) | 80, 328, 425 |
| BseRI | GAGGAG | 1 cut(s) | 377 |
| BseSI | GKGCMC | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 331 |
| BsgI | GTGCAG | 1 cut(s) | 330 |
| BshNI | GGYRCC | 1 cut(s) | 104 |
| BsiSI | CCGG | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 41 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmFI | GGGAC | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| Bsp143I | GATC | 3 cut(s) | 472, 780, 811 |
| BspCNI | CTCAG | 1 cut(s) | 793 |
| BspHI | TCATGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 2 cut(s) | 6, 106 |
| BspPI | GGATC | 2 cut(s) | 467, 819 |
| BspT107I | GGYRCC | 1 cut(s) | 104 |
| BsrDI | GCAATG | 2 cut(s) | 625, 843 |
| BsrFI | RCCGGY | 1 cut(s) | 7 |
| BsrI | ACTGG | 3 cut(s) | 80, 328, 425 |
| BssAI | RCCGGY | 1 cut(s) | 7 |
| BssECI | CCNNGG | 1 cut(s) | 608 |
| BssMI | GATC | 3 cut(s) | 472, 780, 811 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 826 |
| BstC8I | GCNNGC | 2 cut(s) | 218, 349 |
| BstDEI | CTNAG | 4 cut(s) | 275, 525, 735, 801 |
| BstDSI | CCRYGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 3 cut(s) | 76, 175, 373 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 3 cut(s) | 475, 783, 814 |
| BstMBI | GATC | 3 cut(s) | 472, 780, 811 |
| BstNSI | RCATGY | 1 cut(s) | 44 |
| BstSLI | GKGCMC | 1 cut(s) | 145 |
| BstV1I | GCAGC | 1 cut(s) | 331 |
| BstX2I | RGATCY | 1 cut(s) | 811 |
| BstYI | RGATCY | 1 cut(s) | 811 |
| BtgI | CCRYGG | 1 cut(s) | 608 |
| BtgZI | GCGATG | 1 cut(s) | 244 |
| BtsCI | GGATG | 3 cut(s) | 76, 175, 373 |
| BtsIMutI | CAGTG | 1 cut(s) | 321 |
| Cac8I | GCNNGC | 2 cut(s) | 218, 349 |
| CciI | TCATGA | 1 cut(s) | 313 |
| CfoI | GCGC | 1 cut(s) | 233 |
| Cfr10I | RCCGGY | 1 cut(s) | 7 |
| Csp6I | GTAC | 2 cut(s) | 308, 418 |
| CviAII | CATG | 5 cut(s) | 41, 199, 314, 628, 778 |
| CviQI | GTAC | 2 cut(s) | 308, 418 |
| DdeI | CTNAG | 4 cut(s) | 275, 525, 735, 801 |
| DpnI | GATC | 3 cut(s) | 474, 782, 813 |
| DpnII | GATC | 3 cut(s) | 472, 780, 811 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 829 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 625 |
| FaeI | CATG | 5 cut(s) | 44, 202, 317, 631, 781 |
| FaqI | GGGAC | 1 cut(s) | 41 |
| FatI | CATG | 5 cut(s) | 40, 198, 313, 627, 777 |
| FauNDI | CATATG | 1 cut(s) | 333 |
| FbaI | TGATCA | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 1 cut(s) | 345 |
| FokI | GGATG | 3 cut(s) | 63, 182, 380 |
| Fsp4HI | GCNGC | 1 cut(s) | 345 |
| FspBI | CTAG | 2 cut(s) | 237, 252 |
| GlaI | GCGC | 1 cut(s) | 232 |
| GluI | GCNGC | 1 cut(s) | 345 |
| HapII | CCGG | 1 cut(s) | 8 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 5 cut(s) | 44, 202, 317, 631, 781 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HindIII | AAGCTT | 1 cut(s) | 135 |
| HinfI | GANTC | 2 cut(s) | 301, 638 |
| HpaII | CCGG | 1 cut(s) | 8 |
| HphI | GGTGA | 1 cut(s) | 832 |
| Hpy166II | GTNNAC | 1 cut(s) | 321 |
| Hpy188I | TCNGA | 1 cut(s) | 785 |
| Hpy188III | TCNNGA | 2 cut(s) | 314, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 321 |
| HpyAV | CCTTC | 3 cut(s) | 75, 95, 157 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 826 |
| HpyF3I | CTNAG | 4 cut(s) | 275, 525, 735, 801 |
| Hsp92II | CATG | 5 cut(s) | 44, 202, 317, 631, 781 |
| HspAI | GCGC | 1 cut(s) | 231 |
| Ksp22I | TGATCA | 1 cut(s) | 780 |
| Kzo9I | GATC | 3 cut(s) | 472, 780, 811 |
| LmnI | GCTCC | 2 cut(s) | 4, 565 |
| LpnPI | CCDG | 7 cut(s) | 21, 93, 105, 281, 309, 406, 871 |
| Lsp1109I | GCAGC | 1 cut(s) | 331 |
| LweI | GCATC | 3 cut(s) | 280, 358, 870 |
| MaeI | CTAG | 2 cut(s) | 237, 252 |
| MaeIII | GTNAC | 4 cut(s) | 43, 175, 773, 820 |
| MalI | GATC | 3 cut(s) | 474, 782, 813 |
| MboI | GATC | 3 cut(s) | 472, 780, 811 |
| MboII | GAAGA | 4 cut(s) | 107, 172, 253, 543 |
| MflI | RGATCY | 1 cut(s) | 811 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| MluCI | AATT | 6 cut(s) | 205, 222, 291, 407, 599, 713 |
| MmeI | TCCRAC | 1 cut(s) | 461 |
| MnlI | CCTC | 9 cut(s) | 118, 160, 355, 358, 486, 526, 720, 784, 796 |
| Mph1103I | ATGCAT | 1 cut(s) | 625 |
| MseI | TTAA | 2 cut(s) | 354, 872 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspI | CCGG | 1 cut(s) | 8 |
| NdeI | CATATG | 1 cut(s) | 333 |
| NdeII | GATC | 3 cut(s) | 472, 780, 811 |
| NlaIII | CATG | 5 cut(s) | 44, 202, 317, 631, 781 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 106 |
| NmuCI | GTSAC | 2 cut(s) | 175, 820 |
| NsiI | ATGCAT | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 313 |
| PciI | ACATGT | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 301, 638 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 614 |
| PkrI | GCNGC | 1 cut(s) | 346 |
| PscI | ACATGT | 1 cut(s) | 40 |
| PsiI | TTATAA | 1 cut(s) | 150 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 106 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 450, 482 |
| PsuI | RGATCY | 1 cut(s) | 811 |
| RsaI | GTAC | 2 cut(s) | 309, 419 |
| RsaNI | GTAC | 2 cut(s) | 308, 418 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SaqAI | TTAA | 2 cut(s) | 354, 872 |
| SatI | GCNGC | 1 cut(s) | 345 |
| Sau3AI | GATC | 3 cut(s) | 472, 780, 811 |
| ScaI | AGTACT | 2 cut(s) | 309, 419 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SfaNI | GCATC | 3 cut(s) | 280, 358, 870 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 1 cut(s) | 555 |
| SmoI | CTYRAG | 1 cut(s) | 555 |
| SpeI | ACTAGT | 1 cut(s) | 251 |
| Sse9I | AATT | 6 cut(s) | 205, 222, 291, 407, 599, 713 |
| SspMI | CTAG | 2 cut(s) | 237, 252 |
| TaaI | ACNGT | 2 cut(s) | 49, 826 |
| TaqI | TCGA | 1 cut(s) | 299 |
| TasI | AATT | 6 cut(s) | 205, 222, 291, 407, 599, 713 |
| TatI | WGTACW | 2 cut(s) | 307, 417 |
| TfiI | GAWTC | 2 cut(s) | 301, 638 |
| Tru1I | TTAA | 2 cut(s) | 354, 872 |
| Tru9I | TTAA | 2 cut(s) | 354, 872 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseFI | GTSAC | 2 cut(s) | 175, 820 |
| TseI | GCWGC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 2 cut(s) | 175, 820 |
| TspDTI | ATGAA | 6 cut(s) | 114, 173, 302, 320, 413, 590 |
| TspRI | CASTG | 1 cut(s) | 328 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 614 |
| XapI | RAATTY | 3 cut(s) | 407, 599, 713 |
| XceI | RCATGY | 1 cut(s) | 44 |
| XspI | CTAG | 2 cut(s) | 237, 252 |
| ZrmI | AGTACT | 2 cut(s) | 309, 419 |
| Zsp2I | ATGCAT | 1 cut(s) | 625 |