BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 239, 441, 507 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 1 cut(s) | 263 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 2 cut(s) | 341, 354 |
| AfaI | GTAC | 2 cut(s) | 415, 500 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 379 |
| AgsI | TTSAA | 4 cut(s) | 149, 293, 349, 548 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AluBI | AGCT | 2 cut(s) | 36, 167 |
| AluI | AGCT | 2 cut(s) | 36, 167 |
| Alw21I | GWGCWC | 3 cut(s) | 38, 169, 459 |
| Alw26I | GTCTC | 2 cut(s) | 21, 379 |
| Alw44I | GTGCAC | 1 cut(s) | 455 |
| AoxI | GGCC | 1 cut(s) | 491 |
| ApaLI | GTGCAC | 1 cut(s) | 455 |
| ApoI | RAATTY | 2 cut(s) | 341, 354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 1 cut(s) | 95 |
| AsuII | TTCGAA | 1 cut(s) | 282 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BanII | GRGCYC | 3 cut(s) | 38, 169, 178 |
| BauI | CACGAG | 1 cut(s) | 31 |
| Bbv12I | GWGCWC | 3 cut(s) | 38, 169, 459 |
| BccI | CCATC | 2 cut(s) | 211, 512 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcoDI | GTCTC | 2 cut(s) | 21, 379 |
| BfmI | CTRYAG | 1 cut(s) | 513 |
| BmcAI | AGTACT | 1 cut(s) | 415 |
| Bme1390I | CCNGG | 1 cut(s) | 127 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 1 cut(s) | 12 |
| BmrFI | CCNGG | 1 cut(s) | 127 |
| BmsI | GCATC | 1 cut(s) | 261 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| Bpu14I | TTCGAA | 1 cut(s) | 282 |
| BpuEI | CTTGAG | 1 cut(s) | 557 |
| BsaJI | CCNNGG | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 379 |
| Bse118I | RCCGGY | 1 cut(s) | 493 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 126 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 379 |
| BseMII | CTCAG | 5 cut(s) | 161, 380, 408, 473, 540 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BshFI | GGCC | 1 cut(s) | 493 |
| BsiHKAI | GWGCWC | 3 cut(s) | 38, 169, 459 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BslFI | GGGAC | 3 cut(s) | 143, 446, 526 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 379 |
| BsmAI | GTCTC | 2 cut(s) | 21, 379 |
| BsmFI | GGGAC | 3 cut(s) | 143, 446, 526 |
| BsmI | GAATGC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 493 |
| Bsp119I | TTCGAA | 1 cut(s) | 282 |
| Bsp1286I | GDGCHC | 4 cut(s) | 38, 169, 178, 459 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BspACI | CCGC | 1 cut(s) | 263 |
| BspANI | GGCC | 1 cut(s) | 493 |
| BspCNI | CTCAG | 5 cut(s) | 162, 381, 409, 474, 539 |
| BspLI | GGNNCC | 1 cut(s) | 12 |
| BspT104I | TTCGAA | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 1 cut(s) | 493 |
| BssAI | RCCGGY | 1 cut(s) | 493 |
| BssECI | CCNNGG | 1 cut(s) | 126 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssSI | CACGAG | 1 cut(s) | 31 |
| Bst2BI | CACGAG | 1 cut(s) | 31 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 407, 413 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstBI | TTCGAA | 1 cut(s) | 282 |
| BstDEI | CTNAG | 6 cut(s) | 170, 213, 389, 417, 482, 526 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMAI | GTCTC | 2 cut(s) | 21, 379 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 271 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 125 |
| BstSFI | CTRYAG | 1 cut(s) | 513 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 493 |
| BtsIMutI | CAGTG | 1 cut(s) | 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 493 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| Csp6I | GTAC | 2 cut(s) | 414, 499 |
| CviAII | CATG | 3 cut(s) | 62, 304, 401 |
| CviJI | RGCY | 5 cut(s) | 36, 167, 176, 372, 493 |
| CviKI_1 | RGCY | 5 cut(s) | 36, 167, 176, 372, 493 |
| CviQI | GTAC | 2 cut(s) | 414, 499 |
| DdeI | CTNAG | 6 cut(s) | 170, 213, 389, 417, 482, 526 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Ecl136II | GAGCTC | 2 cut(s) | 36, 167 |
| Eco24I | GRGCYC | 3 cut(s) | 38, 169, 178 |
| Eco32I | GATATC | 1 cut(s) | 575 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco53kI | GAGCTC | 2 cut(s) | 36, 167 |
| EcoICRI | GAGCTC | 2 cut(s) | 36, 167 |
| EcoRI | GAATTC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoRV | GATATC | 1 cut(s) | 575 |
| EcoT22I | ATGCAT | 1 cut(s) | 305 |
| EcoT38I | GRGCYC | 3 cut(s) | 38, 169, 178 |
| FaeI | CATG | 3 cut(s) | 65, 307, 404 |
| FaqI | GGGAC | 3 cut(s) | 143, 446, 526 |
| FatI | CATG | 3 cut(s) | 61, 303, 400 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| FriOI | GRGCYC | 3 cut(s) | 38, 169, 178 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HaeIII | GGCC | 1 cut(s) | 493 |
| HapII | CCGG | 1 cut(s) | 494 |
| Hin1II | CATG | 3 cut(s) | 65, 307, 404 |
| HinfI | GANTC | 4 cut(s) | 116, 122, 284, 539 |
| HpaII | CCGG | 1 cut(s) | 494 |
| HphI | GGTGA | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 246, 457, 499 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 121, 171, 529, 597 |
| Hpy188III | TCNNGA | 2 cut(s) | 39, 198 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 246, 457, 499 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 407, 413 |
| HpyCH4V | TGCA | 3 cut(s) | 182, 303, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 271 |
| HpyF3I | CTNAG | 6 cut(s) | 170, 213, 389, 417, 482, 526 |
| Hsp92II | CATG | 3 cut(s) | 65, 307, 404 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LpnPI | CCDG | 6 cut(s) | 24, 27, 112, 139, 183, 507 |
| LweI | GCATC | 1 cut(s) | 261 |
| MaeIII | GTNAC | 1 cut(s) | 407 |
| MalI | GATC | 1 cut(s) | 60 |
| MboI | GATC | 1 cut(s) | 58 |
| MboII | GAAGA | 3 cut(s) | 172, 337, 560 |
| MhlI | GDGCHC | 4 cut(s) | 38, 169, 178, 459 |
| MluCI | AATT | 6 cut(s) | 189, 333, 341, 354, 472, 598 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MnlI | CCTC | 6 cut(s) | 133, 165, 310, 383, 384, 603 |
| Mph1103I | ATGCAT | 1 cut(s) | 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 5 cut(s) | 188, 258, 270, 336, 601 |
| MslI | CAYNNNNRTG | 3 cut(s) | 66, 399, 405 |
| MspI | CCGG | 1 cut(s) | 494 |
| MspR9I | CCNGG | 1 cut(s) | 127 |
| Mva1269I | GAATGC | 1 cut(s) | 305 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 271 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 3 cut(s) | 65, 307, 404 |
| NlaIV | GGNNCC | 1 cut(s) | 12 |
| NmuCI | GTSAC | 1 cut(s) | 407 |
| NsiI | ATGCAT | 1 cut(s) | 305 |
| NspV | TTCGAA | 1 cut(s) | 282 |
| PctI | GAATGC | 1 cut(s) | 305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 3 cut(s) | 116, 122, 284 |
| PflFI | GACNNNGTC | 1 cut(s) | 134 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| PsiI | TTATAA | 3 cut(s) | 239, 441, 507 |
| Psp124BI | GAGCTC | 2 cut(s) | 38, 169 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 1 cut(s) | 12 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PsyI | GACNNNGTC | 1 cut(s) | 134 |
| RsaI | GTAC | 2 cut(s) | 415, 500 |
| RsaNI | GTAC | 2 cut(s) | 414, 499 |
| RseI | CAYNNNNRTG | 3 cut(s) | 66, 399, 405 |
| SacI | GAGCTC | 2 cut(s) | 38, 169 |
| SaqAI | TTAA | 5 cut(s) | 188, 258, 270, 336, 601 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| ScaI | AGTACT | 1 cut(s) | 415 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 1 cut(s) | 127 |
| SduI | GDGCHC | 4 cut(s) | 38, 169, 178, 459 |
| SetI | ASST | 5 cut(s) | 38, 138, 144, 169, 214 |
| SfaNI | GCATC | 1 cut(s) | 261 |
| SfcI | CTRYAG | 1 cut(s) | 513 |
| SfuI | TTCGAA | 1 cut(s) | 282 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 66, 399, 405 |
| SmlI | CTYRAG | 1 cut(s) | 536 |
| SmoI | CTYRAG | 1 cut(s) | 536 |
| Sse9I | AATT | 6 cut(s) | 189, 333, 341, 354, 472, 598 |
| SsiI | CCGC | 1 cut(s) | 263 |
| SstI | GAGCTC | 2 cut(s) | 38, 169 |
| StyD4I | CCNGG | 1 cut(s) | 125 |
| TaaI | ACNGT | 3 cut(s) | 10, 407, 413 |
| TaqI | TCGA | 3 cut(s) | 104, 138, 282 |
| TasI | AATT | 6 cut(s) | 189, 333, 341, 354, 472, 598 |
| TatI | WGTACW | 2 cut(s) | 413, 498 |
| TfiI | GAWTC | 3 cut(s) | 116, 122, 284 |
| Tru1I | TTAA | 5 cut(s) | 188, 258, 270, 336, 601 |
| Tru9I | TTAA | 5 cut(s) | 188, 258, 270, 336, 601 |
| TscAI | CASTG | 1 cut(s) | 412 |
| TseFI | GTSAC | 1 cut(s) | 407 |
| Tsp45I | GTSAC | 1 cut(s) | 407 |
| TspDTI | ATGAA | 2 cut(s) | 99, 320 |
| TspRI | CASTG | 1 cut(s) | 412 |
| Tth111I | GACNNNGTC | 1 cut(s) | 134 |
| VneI | GTGCAC | 1 cut(s) | 455 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XapI | RAATTY | 2 cut(s) | 341, 354 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| ZrmI | AGTACT | 1 cut(s) | 415 |
| Zsp2I | ATGCAT | 1 cut(s) | 305 |