BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 161, 165 |
| AclWI | GGATC | 3 cut(s) | 41, 400, 413 |
| AcoI | YGGCCR | 1 cut(s) | 162 |
| AcsI | RAATTY | 2 cut(s) | 114, 215 |
| AcuI | CTGAAG | 1 cut(s) | 27 |
| AfaI | GTAC | 2 cut(s) | 32, 271 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AflII | CTTAAG | 1 cut(s) | 74 |
| AgsI | TTSAA | 4 cut(s) | 92, 178, 220, 280 |
| AluBI | AGCT | 2 cut(s) | 88, 311 |
| AluI | AGCT | 2 cut(s) | 88, 311 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| AlwI | GGATC | 3 cut(s) | 41, 400, 413 |
| AoxI | GGCC | 1 cut(s) | 162 |
| ApoI | RAATTY | 2 cut(s) | 114, 215 |
| AsuC2I | CCSGG | 1 cut(s) | 17 |
| BamHI | GGATCC | 1 cut(s) | 405 |
| BciVI | GTATCC | 1 cut(s) | 193 |
| BcnI | CCSGG | 1 cut(s) | 17 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 3 cut(s) | 227, 308, 439 |
| BfrI | CTTAAG | 1 cut(s) | 74 |
| BfuI | GTATCC | 1 cut(s) | 193 |
| BglII | AGATCT | 1 cut(s) | 370 |
| BisI | GCNGC | 2 cut(s) | 162, 165 |
| BlsI | GCNGC | 2 cut(s) | 163, 166 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| BmiI | GGNNCC | 1 cut(s) | 407 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 2 cut(s) | 33, 199 |
| BpuMI | CCSGG | 1 cut(s) | 17 |
| BsaAI | YACGTR | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseGI | GGATG | 1 cut(s) | 303 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMII | CTCAG | 2 cut(s) | 146, 162 |
| BseX3I | CGGCCG | 1 cut(s) | 162 |
| Bsh1285I | CGRYCG | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 164 |
| BsiEI | CGRYCG | 1 cut(s) | 165 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslFI | GGGAC | 2 cut(s) | 32, 80 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsmFI | GGGAC | 2 cut(s) | 32, 80 |
| BsnI | GGCC | 1 cut(s) | 164 |
| Bsp1407I | TGTACA | 1 cut(s) | 269 |
| Bsp143I | GATC | 3 cut(s) | 46, 370, 405 |
| BspACI | CCGC | 2 cut(s) | 161, 165 |
| BspANI | GGCC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 2 cut(s) | 145, 163 |
| BspLI | GGNNCC | 1 cut(s) | 407 |
| BspPI | GGATC | 3 cut(s) | 41, 400, 413 |
| BspTI | CTTAAG | 1 cut(s) | 74 |
| BsrGI | TGTACA | 1 cut(s) | 269 |
| BssMI | GATC | 3 cut(s) | 46, 370, 405 |
| Bst4CI | ACNGT | 1 cut(s) | 267 |
| BstAFI | CTTAAG | 1 cut(s) | 74 |
| BstAUI | TGTACA | 1 cut(s) | 269 |
| BstBAI | YACGTR | 1 cut(s) | 34 |
| BstDEI | CTNAG | 2 cut(s) | 132, 171 |
| BstF5I | GGATG | 1 cut(s) | 303 |
| BstKTI | GATC | 3 cut(s) | 49, 373, 408 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 3 cut(s) | 46, 370, 405 |
| BstMCI | CGRYCG | 1 cut(s) | 165 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 21 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BstX2I | RGATCY | 3 cut(s) | 46, 370, 405 |
| BstYI | RGATCY | 3 cut(s) | 46, 370, 405 |
| BstZI | CGGCCG | 1 cut(s) | 162 |
| BsuI | GTATCC | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 164 |
| BtsCI | GGATG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 1 cut(s) | 140 |
| CciNI | GCGGCCGC | 1 cut(s) | 162 |
| Csp6I | GTAC | 2 cut(s) | 31, 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 116, 151 |
| CviAII | CATG | 2 cut(s) | 53, 347 |
| CviJI | RGCY | 6 cut(s) | 15, 88, 164, 230, 283, 311 |
| CviKI_1 | RGCY | 6 cut(s) | 15, 88, 164, 230, 283, 311 |
| CviQI | GTAC | 2 cut(s) | 31, 270 |
| DdeI | CTNAG | 2 cut(s) | 132, 171 |
| DpnI | GATC | 3 cut(s) | 48, 372, 407 |
| DpnII | GATC | 3 cut(s) | 46, 370, 405 |
| EaeI | YGGCCR | 1 cut(s) | 162 |
| EagI | CGGCCG | 1 cut(s) | 162 |
| EclXI | CGGCCG | 1 cut(s) | 162 |
| Eco52I | CGGCCG | 1 cut(s) | 162 |
| Eco57I | CTGAAG | 1 cut(s) | 27 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| FaeI | CATG | 2 cut(s) | 56, 350 |
| FaiI | YATR | 7 cut(s) | 54, 148, 205, 207, 291, 301, 348 |
| FaqI | GGGAC | 2 cut(s) | 32, 80 |
| FatI | CATG | 2 cut(s) | 52, 346 |
| FauNDI | CATATG | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 2 cut(s) | 162, 165 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 162, 165 |
| FspBI | CTAG | 3 cut(s) | 227, 308, 439 |
| GluI | GCNGC | 2 cut(s) | 162, 165 |
| HaeIII | GGCC | 1 cut(s) | 164 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 2 cut(s) | 56, 350 |
| HinfI | GANTC | 1 cut(s) | 361 |
| HpaII | CCGG | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 2 cut(s) | 270, 272 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 172 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| Hpy8I | GTNNAC | 2 cut(s) | 270, 272 |
| HpyCH4III | ACNGT | 1 cut(s) | 267 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 1 cut(s) | 332 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 21 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 171 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92II | CATG | 2 cut(s) | 56, 350 |
| Kzo9I | GATC | 3 cut(s) | 46, 370, 405 |
| LpnPI | CCDG | 2 cut(s) | 29, 350 |
| LweI | GCATC | 2 cut(s) | 33, 199 |
| MaeI | CTAG | 3 cut(s) | 227, 308, 439 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 1 cut(s) | 34 |
| MalI | GATC | 3 cut(s) | 48, 372, 407 |
| MboI | GATC | 3 cut(s) | 46, 370, 405 |
| MboII | GAAGA | 4 cut(s) | 68, 254, 331, 334 |
| MflI | RGATCY | 3 cut(s) | 46, 370, 405 |
| MluCI | AATT | 3 cut(s) | 114, 215, 285 |
| MnlI | CCTC | 3 cut(s) | 244, 351, 396 |
| MseI | TTAA | 3 cut(s) | 6, 75, 416 |
| MspCI | CTTAAG | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 21 |
| NciI | CCSGG | 1 cut(s) | 17 |
| NdeI | CATATG | 1 cut(s) | 205 |
| NdeII | GATC | 3 cut(s) | 46, 370, 405 |
| NlaIII | CATG | 2 cut(s) | 56, 350 |
| NlaIV | GGNNCC | 1 cut(s) | 407 |
| NmuCI | GTSAC | 1 cut(s) | 34 |
| NotI | GCGGCCGC | 1 cut(s) | 162 |
| PfeI | GAWTC | 1 cut(s) | 361 |
| PkrI | GCNGC | 2 cut(s) | 163, 166 |
| Ppu21I | YACGTR | 1 cut(s) | 34 |
| PspN4I | GGNNCC | 1 cut(s) | 407 |
| PsuI | RGATCY | 3 cut(s) | 46, 370, 405 |
| RsaI | GTAC | 2 cut(s) | 32, 271 |
| RsaNI | GTAC | 2 cut(s) | 31, 270 |
| SaqAI | TTAA | 3 cut(s) | 6, 75, 416 |
| SatI | GCNGC | 2 cut(s) | 162, 165 |
| Sau3AI | GATC | 3 cut(s) | 46, 370, 405 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SetI | ASST | 4 cut(s) | 36, 90, 313, 425 |
| SfaNI | GCATC | 2 cut(s) | 33, 199 |
| SmlI | CTYRAG | 1 cut(s) | 74 |
| SmoI | CTYRAG | 1 cut(s) | 74 |
| Sse9I | AATT | 3 cut(s) | 114, 215, 285 |
| SsiI | CCGC | 2 cut(s) | 161, 165 |
| SspMI | CTAG | 3 cut(s) | 227, 308, 439 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| TaaI | ACNGT | 1 cut(s) | 267 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 2 cut(s) | 356, 429 |
| TasI | AATT | 3 cut(s) | 114, 215, 285 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TauI | GCSGC | 2 cut(s) | 164, 167 |
| TfiI | GAWTC | 1 cut(s) | 361 |
| Tru1I | TTAA | 3 cut(s) | 6, 75, 416 |
| Tru9I | TTAA | 3 cut(s) | 6, 75, 416 |
| TscAI | CASTG | 1 cut(s) | 140 |
| TseFI | GTSAC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 3 cut(s) | 69, 122, 363 |
| TspRI | CASTG | 1 cut(s) | 140 |
| Vha464I | CTTAAG | 1 cut(s) | 74 |
| XapI | RAATTY | 2 cut(s) | 114, 215 |
| XspI | CTAG | 3 cut(s) | 227, 308, 439 |