Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 235 |
| AccB1I | GGYRCC | 1 cut(s) | 44 |
| AciI | CCGC | 1 cut(s) | 885 |
| AcoI | YGGCCR | 1 cut(s) | 2055 |
| AcsI | RAATTY | 4 cut(s) | 768, 1171, 1666, 2249 |
| AcuI | CTGAAG | 4 cut(s) | 1535, 2004, 2259, 2355 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AfaI | GTAC | 9 cut(s) | 278, 1253, 1592, 1678, 1855, 2036, 2086, 2113, 2225 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 183, 574, 953, 1224, 1338, 1366, 1793 |
| AflII | CTTAAG | 1 cut(s) | 1208 |
| AflIII | ACRYGT | 1 cut(s) | 1884 |
| AhlI | ACTAGT | 2 cut(s) | 320, 1823 |
| Alw26I | GTCTC | 2 cut(s) | 328, 1187 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 563 |
| AoxI | GGCC | 4 cut(s) | 159, 1215, 1442, 2055 |
| ApoI | RAATTY | 4 cut(s) | 768, 1171, 1666, 2249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1403 |
| AspLEI | GCGC | 2 cut(s) | 47, 524 |
| AspS9I | GGNCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| AsuC2I | CCSGG | 1 cut(s) | 366 |
| AsuHPI | GGTGA | 2 cut(s) | 443, 940 |
| AsuII | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| AvaII | GGWCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| BaeGI | GKGCMC | 1 cut(s) | 268 |
| BalI | TGGCCA | 1 cut(s) | 2057 |
| BamHI | GGATCC | 1 cut(s) | 1645 |
| BanI | GGYRCC | 1 cut(s) | 44 |
| BanII | GRGCYC | 1 cut(s) | 1020 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2077, 2109 |
| BauI | CACGAG | 1 cut(s) | 261 |
| BbsI | GAAGAC | 1 cut(s) | 1396 |
| BccI | CCATC | 7 cut(s) | 224, 404, 592, 744, 1222, 1286, 1298 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 230, 264, 2339, 2373 |
| BciVI | GTATCC | 2 cut(s) | 372, 2281 |
| BcnI | CCSGG | 1 cut(s) | 366 |
| BcoDI | GTCTC | 2 cut(s) | 328, 1187 |
| BcuI | ACTAGT | 2 cut(s) | 320, 1823 |
| BfmI | CTRYAG | 2 cut(s) | 483, 2137 |
| BfoI | RGCGCY | 1 cut(s) | 48 |
| BfrI | CTTAAG | 1 cut(s) | 1208 |
| BfuAI | ACCTGC | 1 cut(s) | 235 |
| BfuI | GTATCC | 2 cut(s) | 372, 2281 |
| BmcAI | AGTACT | 6 cut(s) | 278, 1592, 1678, 2086, 2113, 2225 |
| Bme1390I | CCNGG | 1 cut(s) | 366 |
| Bme18I | GGWCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| BmgT120I | GGNCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| BmiI | GGNNCC | 3 cut(s) | 46, 1647, 1840 |
| BmrFI | CCNGG | 1 cut(s) | 366 |
| BmsI | GCATC | 9 cut(s) | 228, 616, 648, 747, 1091, 1442, 1733, 1781, 2347 |
| BpiI | GAAGAC | 1 cut(s) | 1396 |
| BpmI | CTGGAG | 1 cut(s) | 2136 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1661 |
| Bpu14I | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| BpuEI | CTTGAG | 4 cut(s) | 1301, 1441, 2281, 2303 |
| BpuMI | CCSGG | 1 cut(s) | 366 |
| Bsa29I | ATCGAT | 1 cut(s) | 469 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2345 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 406, 436, 2109, 2139 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 183, 574, 953, 1224, 1338, 1366, 1793 |
| Bse1I | ACTGG | 3 cut(s) | 947, 1873, 2119 |
| Bse3DI | GCAATG | 1 cut(s) | 2370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2345 |
| BseCI | ATCGAT | 1 cut(s) | 469 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseGI | GGATG | 7 cut(s) | 235, 511, 755, 762, 990, 1233, 1309 |
| BseJI | GATNNNNATC | 1 cut(s) | 2345 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 183, 574, 953, 1224, 1338, 1366, 1793 |
| BseMI | GCAATG | 1 cut(s) | 2370 |
| BseMII | CTCAG | 2 cut(s) | 144, 1802 |
| BseNI | ACTGG | 3 cut(s) | 947, 1873, 2119 |
| BseRI | GAGGAG | 1 cut(s) | 2006 |
| BseSI | GKGCMC | 1 cut(s) | 268 |
| BsgI | GTGCAG | 3 cut(s) | 714, 1409, 1772 |
| BshFI | GGCC | 4 cut(s) | 161, 1217, 1444, 2057 |
| BshNI | GGYRCC | 1 cut(s) | 44 |
| BshVI | ATCGAT | 1 cut(s) | 469 |
| BsiSI | CCGG | 4 cut(s) | 65, 92, 162, 365 |
| BslFI | GGGAC | 3 cut(s) | 331, 551, 1142 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 183, 574, 953, 1224, 1338, 1366, 1793 |
| BsmAI | GTCTC | 2 cut(s) | 328, 1187 |
| BsmFI | GGGAC | 3 cut(s) | 331, 551, 1142 |
| BsmI | GAATGC | 2 cut(s) | 1060, 1460 |
| BsnI | GGCC | 4 cut(s) | 161, 1217, 1444, 2057 |
| Bsp119I | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| Bsp1286I | GDGCHC | 2 cut(s) | 268, 1020 |
| BspACI | CCGC | 1 cut(s) | 885 |
| BspANI | GGCC | 4 cut(s) | 161, 1217, 1444, 2057 |
| BspCNI | CTCAG | 2 cut(s) | 145, 1801 |
| BspDI | ATCGAT | 1 cut(s) | 469 |
| BspLI | GGNNCC | 3 cut(s) | 46, 1647, 1840 |
| BspMAI | CTGCAG | 1 cut(s) | 487 |
| BspMI | ACCTGC | 1 cut(s) | 235 |
| BspT104I | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| BspT107I | GGYRCC | 1 cut(s) | 44 |
| BspTI | CTTAAG | 1 cut(s) | 1208 |
| BsrDI | GCAATG | 1 cut(s) | 2370 |
| BsrI | ACTGG | 3 cut(s) | 947, 1873, 2119 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| BssSI | CACGAG | 1 cut(s) | 261 |
| Bst2BI | CACGAG | 1 cut(s) | 261 |
| Bst4CI | ACNGT | 4 cut(s) | 226, 609, 2089, 2164 |
| Bst6I | CTCTTC | 6 cut(s) | 134, 1233, 1293, 1917, 1983, 2235 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstAFI | CTTAAG | 1 cut(s) | 1208 |
| BstBI | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| BstC8I | GCNNGC | 3 cut(s) | 900, 2070, 2183 |
| BstDEI | CTNAG | 7 cut(s) | 153, 329, 1134, 1150, 1578, 1661, 1788 |
| BstEII | GGTNACC | 1 cut(s) | 1414 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1222, 1791 |
| BstF5I | GGATG | 7 cut(s) | 235, 511, 755, 762, 990, 1233, 1309 |
| BstH2I | RGCGCY | 1 cut(s) | 48 |
| BstHHI | GCGC | 2 cut(s) | 47, 524 |
| BstMAI | GTCTC | 2 cut(s) | 328, 1187 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 158, 2366 |
| BstNSI | RCATGY | 4 cut(s) | 834, 902, 1888, 2185 |
| BstPI | GGTNACC | 1 cut(s) | 1414 |
| BstSCI | CCNGG | 1 cut(s) | 364 |
| BstSFI | CTRYAG | 2 cut(s) | 483, 2137 |
| BstSLI | GKGCMC | 1 cut(s) | 268 |
| BstV2I | GAAGAC | 1 cut(s) | 1396 |
| BstX2I | RGATCY | 2 cut(s) | 1645, 1975 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1167 |
| BstYI | RGATCY | 2 cut(s) | 1645, 1975 |
| Bsu15I | ATCGAT | 1 cut(s) | 469 |
| BsuI | GTATCC | 2 cut(s) | 372, 2281 |
| BsuRI | GGCC | 4 cut(s) | 161, 1217, 1444, 2057 |
| BsuTUI | ATCGAT | 1 cut(s) | 469 |
| BtsCI | GGATG | 7 cut(s) | 235, 511, 755, 762, 990, 1233, 1309 |
| BtsI | GCAGTG | 2 cut(s) | 1084, 1569 |
| BtsIMutI | CAGTG | 7 cut(s) | 231, 564, 681, 705, 1044, 1084, 1569 |
| BveI | ACCTGC | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 3 cut(s) | 900, 2070, 2183 |
| CaiI | CAGNNNCTG | 1 cut(s) | 563 |
| CfoI | GCGC | 2 cut(s) | 47, 524 |
| Cfr13I | GGNCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| ClaI | ATCGAT | 1 cut(s) | 469 |
| Csp6I | GTAC | 9 cut(s) | 277, 1252, 1591, 1677, 1854, 2035, 2085, 2112, 2224 |
| CviQI | GTAC | 9 cut(s) | 277, 1252, 1591, 1677, 1854, 2035, 2085, 2112, 2224 |
| DdeI | CTNAG | 7 cut(s) | 153, 329, 1134, 1150, 1578, 1661, 1788 |
| DinI | GGCGCC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 1 cut(s) | 2055 |
| Eam1104I | CTCTTC | 6 cut(s) | 134, 1233, 1293, 1917, 1983, 2235 |
| EarI | CTCTTC | 6 cut(s) | 134, 1233, 1293, 1917, 1983, 2235 |
| Eco147I | AGGCCT | 2 cut(s) | 1217, 1444 |
| Eco24I | GRGCYC | 1 cut(s) | 1020 |
| Eco47I | GGWCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| Eco57I | CTGAAG | 4 cut(s) | 1535, 2004, 2259, 2355 |
| Eco91I | GGTNACC | 1 cut(s) | 1414 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1222, 1791 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1860 |
| EcoO65I | GGTNACC | 1 cut(s) | 1414 |
| EcoRI | GAATTC | 3 cut(s) | 768, 1171, 2249 |
| EcoT22I | ATGCAT | 2 cut(s) | 1774, 2183 |
| EcoT38I | GRGCYC | 1 cut(s) | 1020 |
| EgeI | GGCGCC | 1 cut(s) | 46 |
| EheI | GGCGCC | 1 cut(s) | 46 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 19, 51, 1202, 1234, 2052, 2084 |
| FaqI | GGGAC | 3 cut(s) | 331, 551, 1142 |
| FauNDI | CATATG | 1 cut(s) | 2177 |
| FokI | GGATG | 7 cut(s) | 242, 518, 762, 769, 977, 1240, 1316 |
| FriOI | GRGCYC | 1 cut(s) | 1020 |
| GlaI | GCGC | 2 cut(s) | 46, 523 |
| GsuI | CTGGAG | 1 cut(s) | 2136 |
| HaeII | RGCGCY | 1 cut(s) | 48 |
| HaeIII | GGCC | 4 cut(s) | 161, 1217, 1444, 2057 |
| HapII | CCGG | 4 cut(s) | 65, 92, 162, 365 |
| HhaI | GCGC | 2 cut(s) | 47, 524 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| Hin6I | GCGC | 2 cut(s) | 45, 522 |
| HinP1I | GCGC | 2 cut(s) | 45, 522 |
| HincII | GTYRAC | 2 cut(s) | 18, 121 |
| HindII | GTYRAC | 2 cut(s) | 18, 121 |
| HindIII | AAGCTT | 2 cut(s) | 818, 1658 |
| HinfI | GANTC | 6 cut(s) | 302, 434, 580, 838, 1130, 2152 |
| HpaII | CCGG | 4 cut(s) | 65, 92, 162, 365 |
| HphI | GGTGA | 2 cut(s) | 443, 940 |
| Hpy166II | GTNNAC | 3 cut(s) | 18, 121, 1584 |
| Hpy188I | TCNGA | 8 cut(s) | 178, 1053, 1729, 1791, 2098, 2157, 2215, 2374 |
| Hpy188III | TCNNGA | 9 cut(s) | 205, 344, 853, 1332, 1396, 1685, 1961, 1982, 2385 |
| Hpy8I | GTNNAC | 3 cut(s) | 18, 121, 1584 |
| HpyAV | CCTTC | 8 cut(s) | 142, 151, 529, 643, 1207, 1393, 1559, 1824 |
| HpyCH4III | ACNGT | 4 cut(s) | 226, 609, 2089, 2164 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 158, 2366 |
| HpyF3I | CTNAG | 7 cut(s) | 153, 329, 1134, 1150, 1578, 1661, 1788 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| HspAI | GCGC | 2 cut(s) | 45, 522 |
| KasI | GGCGCC | 1 cut(s) | 44 |
| LmnI | GCTCC | 1 cut(s) | 1074 |
| LweI | GCATC | 9 cut(s) | 228, 616, 648, 747, 1091, 1442, 1733, 1781, 2347 |
| MaeIII | GTNAC | 2 cut(s) | 459, 1414 |
| MfeI | CAATTG | 3 cut(s) | 525, 903, 1968 |
| MflI | RGATCY | 2 cut(s) | 1645, 1975 |
| MhlI | GDGCHC | 2 cut(s) | 268, 1020 |
| MlsI | TGGCCA | 1 cut(s) | 2057 |
| MluNI | TGGCCA | 1 cut(s) | 2057 |
| Mly113I | GGCGCC | 1 cut(s) | 45 |
| MlyI | GAGTC | 1 cut(s) | 2146 |
| MmeI | TCCRAC | 2 cut(s) | 1170, 2255 |
| Mox20I | TGGCCA | 1 cut(s) | 2057 |
| Mph1103I | ATGCAT | 2 cut(s) | 1774, 2183 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1403 |
| MscI | TGGCCA | 1 cut(s) | 2057 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2176, 2180 |
| Msp20I | TGGCCA | 1 cut(s) | 2057 |
| MspCI | CTTAAG | 1 cut(s) | 1208 |
| MspI | CCGG | 4 cut(s) | 65, 92, 162, 365 |
| MspR9I | CCNGG | 1 cut(s) | 366 |
| MunI | CAATTG | 3 cut(s) | 525, 903, 1968 |
| Mva1269I | GAATGC | 2 cut(s) | 1060, 1460 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 158, 2366 |
| NarI | GGCGCC | 1 cut(s) | 45 |
| NciI | CCSGG | 1 cut(s) | 366 |
| NdeI | CATATG | 1 cut(s) | 2177 |
| NlaIV | GGNNCC | 3 cut(s) | 46, 1647, 1840 |
| NmuCI | GTSAC | 1 cut(s) | 459 |
| NsiI | ATGCAT | 2 cut(s) | 1774, 2183 |
| NspI | RCATGY | 4 cut(s) | 834, 902, 1888, 2185 |
| NspV | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| PaeI | GCATGC | 2 cut(s) | 902, 2185 |
| PceI | AGGCCT | 2 cut(s) | 1217, 1444 |
| PciI | ACATGT | 1 cut(s) | 1884 |
| PctI | GAATGC | 2 cut(s) | 1060, 1460 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1403 |
| PfeI | GAWTC | 5 cut(s) | 302, 434, 580, 838, 1130 |
| PleI | GAGTC | 1 cut(s) | 2146 |
| PluTI | GGCGCC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 2146 |
| PpuMI | RGGWCCY | 1 cut(s) | 1860 |
| PscI | ACATGT | 1 cut(s) | 1884 |
| Psp5II | RGGWCCY | 1 cut(s) | 1860 |
| PspEI | GGTNACC | 1 cut(s) | 1414 |
| PspN4I | GGNNCC | 3 cut(s) | 46, 1647, 1840 |
| PspPI | GGNCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| PspPPI | RGGWCCY | 1 cut(s) | 1860 |
| PstI | CTGCAG | 1 cut(s) | 487 |
| PstNI | CAGNNNCTG | 1 cut(s) | 563 |
| PsuI | RGATCY | 2 cut(s) | 1645, 1975 |
| RsaI | GTAC | 9 cut(s) | 278, 1253, 1592, 1678, 1855, 2036, 2086, 2113, 2225 |
| RsaNI | GTAC | 9 cut(s) | 277, 1252, 1591, 1677, 1854, 2035, 2085, 2112, 2224 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2176, 2180 |
| Sau96I | GGNCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| ScaI | AGTACT | 6 cut(s) | 278, 1592, 1678, 2086, 2113, 2225 |
| SchI | GAGTC | 1 cut(s) | 2146 |
| ScrFI | CCNGG | 1 cut(s) | 366 |
| SduI | GDGCHC | 2 cut(s) | 268, 1020 |
| SfaNI | GCATC | 9 cut(s) | 228, 616, 648, 747, 1091, 1442, 1733, 1781, 2347 |
| SfcI | CTRYAG | 2 cut(s) | 483, 2137 |
| SfoI | GGCGCC | 1 cut(s) | 46 |
| SfuI | TTCGAA | 3 cut(s) | 219, 250, 2247 |
| SinI | GGWCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2176, 2180 |
| SmlI | CTYRAG | 5 cut(s) | 1208, 1280, 1420, 2282, 2296 |
| SmoI | CTYRAG | 5 cut(s) | 1208, 1280, 1420, 2282, 2296 |
| SpeI | ACTAGT | 2 cut(s) | 320, 1823 |
| SphI | GCATGC | 2 cut(s) | 902, 2185 |
| SseBI | AGGCCT | 2 cut(s) | 1217, 1444 |
| SsiI | CCGC | 1 cut(s) | 885 |
| SspDI | GGCGCC | 1 cut(s) | 44 |
| StuI | AGGCCT | 2 cut(s) | 1217, 1444 |
| StyD4I | CCNGG | 1 cut(s) | 364 |
| TaaI | ACNGT | 4 cut(s) | 226, 609, 2089, 2164 |
| TatI | WGTACW | 8 cut(s) | 276, 1251, 1590, 1676, 1853, 2084, 2111, 2223 |
| TauI | GCSGC | 1 cut(s) | 887 |
| TfiI | GAWTC | 5 cut(s) | 302, 434, 580, 838, 1130 |
| TscAI | CASTG | 7 cut(s) | 231, 564, 688, 705, 1044, 1084, 1569 |
| TseFI | GTSAC | 1 cut(s) | 459 |
| Tsp45I | GTSAC | 1 cut(s) | 459 |
| TspDTI | ATGAA | 9 cut(s) | 324, 522, 959, 1284, 1586, 1628, 1956, 2271, 2370 |
| TspRI | CASTG | 7 cut(s) | 231, 564, 688, 705, 1044, 1084, 1569 |
| Vha464I | CTTAAG | 1 cut(s) | 1208 |
| VpaK11BI | GGWCC | 4 cut(s) | 11, 1346, 1784, 1860 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1222, 1791 |
| XapI | RAATTY | 4 cut(s) | 768, 1171, 1666, 2249 |
| XceI | RCATGY | 4 cut(s) | 834, 902, 1888, 2185 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1403 |
| ZrmI | AGTACT | 6 cut(s) | 278, 1592, 1678, 2086, 2113, 2225 |
| Zsp2I | ATGCAT | 2 cut(s) | 1774, 2183 |