Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 73 |
| Acc16I | TGCGCA | 1 cut(s) | 94 |
| Acc36I | ACCTGC | 2 cut(s) | 73, 976 |
| AccB1I | GGYRCC | 1 cut(s) | 473 |
| AccBSI | CCGCTC | 1 cut(s) | 1094 |
| AciI | CCGC | 2 cut(s) | 384, 1094 |
| AclWI | GGATC | 7 cut(s) | 186, 446, 459, 551, 625, 683, 740 |
| AcsI | RAATTY | 6 cut(s) | 37, 157, 326, 531, 584, 891 |
| AcuI | CTGAAG | 1 cut(s) | 846 |
| AcyI | GRCGYC | 1 cut(s) | 983 |
| AfaI | GTAC | 3 cut(s) | 50, 132, 966 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| AflII | CTTAAG | 1 cut(s) | 215 |
| AgsI | TTSAA | 8 cut(s) | 162, 358, 518, 584, 711, 793, 890, 975 |
| Alw21I | GWGCWC | 2 cut(s) | 117, 413 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| Alw44I | GTGCAC | 1 cut(s) | 409 |
| AlwI | GGATC | 7 cut(s) | 186, 446, 459, 551, 625, 683, 740 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 698 |
| AoxI | GGCC | 1 cut(s) | 281 |
| ApaLI | GTGCAC | 1 cut(s) | 409 |
| ApoI | RAATTY | 6 cut(s) | 37, 157, 326, 531, 584, 891 |
| AspLEI | GCGC | 1 cut(s) | 95 |
| AspS9I | GGNCC | 2 cut(s) | 281, 1021 |
| AsuHPI | GGTGA | 3 cut(s) | 54, 434, 835 |
| AsuII | TTCGAA | 1 cut(s) | 875 |
| AvaII | GGWCC | 1 cut(s) | 1021 |
| BaeGI | GKGCMC | 1 cut(s) | 413 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 560, 593 |
| BamHI | GGATCC | 1 cut(s) | 451 |
| BanI | GGYRCC | 1 cut(s) | 473 |
| BbsI | GAAGAC | 2 cut(s) | 653, 873 |
| Bbv12I | GWGCWC | 2 cut(s) | 117, 413 |
| BccI | CCATC | 4 cut(s) | 20, 147, 1045, 1163 |
| BclI | TGATCA | 1 cut(s) | 825 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 3 cut(s) | 11, 288, 444 |
| BfmI | CTRYAG | 4 cut(s) | 294, 509, 699, 1133 |
| BfrI | CTTAAG | 1 cut(s) | 215 |
| BfuAI | ACCTGC | 2 cut(s) | 73, 976 |
| BglII | AGATCT | 2 cut(s) | 336, 520 |
| Bme18I | GGWCC | 1 cut(s) | 1021 |
| BmgT120I | GGNCC | 2 cut(s) | 281, 1021 |
| BmiI | GGNNCC | 4 cut(s) | 453, 475, 1023, 1116 |
| BmsI | GCATC | 2 cut(s) | 754, 793 |
| BpiI | GAAGAC | 2 cut(s) | 653, 873 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1085 |
| Bpu14I | TTCGAA | 1 cut(s) | 875 |
| BpuEI | CTTGAG | 4 cut(s) | 84, 317, 676, 1093 |
| Bsa29I | ATCGAT | 1 cut(s) | 636 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaHI | GRCGYC | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 4 cut(s) | 613, 728, 978, 1003 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 114, 144 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1051 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseCI | ATCGAT | 1 cut(s) | 636 |
| BseDI | CCNNGG | 4 cut(s) | 613, 728, 978, 1003 |
| BseGI | GGATG | 2 cut(s) | 226, 411 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| BseMII | CTCAG | 1 cut(s) | 1188 |
| BseRI | GAGGAG | 2 cut(s) | 7, 1160 |
| BseSI | GKGCMC | 1 cut(s) | 413 |
| BshFI | GGCC | 1 cut(s) | 283 |
| BshNI | GGYRCC | 1 cut(s) | 473 |
| BshVI | ATCGAT | 1 cut(s) | 636 |
| BsiHKAI | GWGCWC | 2 cut(s) | 117, 413 |
| BslFI | GGGAC | 1 cut(s) | 922 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 922 |
| BsmI | GAATGC | 3 cut(s) | 30, 919, 995 |
| BsnI | GGCC | 1 cut(s) | 283 |
| Bsp119I | TTCGAA | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 413 |
| BspACI | CCGC | 2 cut(s) | 384, 1094 |
| BspANI | GGCC | 1 cut(s) | 283 |
| BspCNI | CTCAG | 1 cut(s) | 1189 |
| BspDI | ATCGAT | 1 cut(s) | 636 |
| BspLI | GGNNCC | 4 cut(s) | 453, 475, 1023, 1116 |
| BspMAI | CTGCAG | 3 cut(s) | 298, 513, 703 |
| BspMI | ACCTGC | 2 cut(s) | 73, 976 |
| BspPI | GGATC | 7 cut(s) | 186, 446, 459, 551, 625, 683, 740 |
| BspT104I | TTCGAA | 1 cut(s) | 875 |
| BspT107I | GGYRCC | 1 cut(s) | 473 |
| BspTI | CTTAAG | 1 cut(s) | 215 |
| BsrBI | CCGCTC | 1 cut(s) | 1094 |
| BssECI | CCNNGG | 4 cut(s) | 613, 728, 978, 1003 |
| BssNI | GRCGYC | 1 cut(s) | 983 |
| BssT1I | CCWWGG | 3 cut(s) | 613, 728, 1003 |
| Bst4CI | ACNGT | 1 cut(s) | 979 |
| Bst6I | CTCTTC | 2 cut(s) | 402, 462 |
| BstACI | GRCGYC | 1 cut(s) | 983 |
| BstAFI | CTTAAG | 1 cut(s) | 215 |
| BstBI | TTCGAA | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 4 cut(s) | 187, 268, 606, 662 |
| BstDEI | CTNAG | 4 cut(s) | 372, 1047, 1085, 1197 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstF5I | GGATG | 2 cut(s) | 226, 411 |
| BstHHI | GCGC | 1 cut(s) | 95 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 701, 704, 968, 989 |
| BstNSI | RCATGY | 1 cut(s) | 189 |
| BstSFI | CTRYAG | 4 cut(s) | 294, 509, 699, 1133 |
| BstSLI | GKGCMC | 1 cut(s) | 413 |
| BstV2I | GAAGAC | 2 cut(s) | 653, 873 |
| BstX2I | RGATCY | 7 cut(s) | 178, 336, 451, 520, 556, 617, 688 |
| BstYI | RGATCY | 7 cut(s) | 178, 336, 451, 520, 556, 617, 688 |
| Bsu15I | ATCGAT | 1 cut(s) | 636 |
| BsuRI | GGCC | 1 cut(s) | 283 |
| BsuTUI | ATCGAT | 1 cut(s) | 636 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtsCI | GGATG | 2 cut(s) | 226, 411 |
| BtsIMutI | CAGTG | 1 cut(s) | 1194 |
| BveI | ACCTGC | 2 cut(s) | 73, 976 |
| Cac8I | GCNNGC | 4 cut(s) | 187, 268, 606, 662 |
| CaiI | CAGNNNCTG | 1 cut(s) | 698 |
| CfoI | GCGC | 1 cut(s) | 95 |
| Cfr13I | GGNCC | 2 cut(s) | 281, 1021 |
| ClaI | ATCGAT | 1 cut(s) | 636 |
| CseI | GACGC | 1 cut(s) | 972 |
| Csp6I | GTAC | 3 cut(s) | 49, 131, 965 |
| CviAII | CATG | 3 cut(s) | 172, 186, 770 |
| CviQI | GTAC | 3 cut(s) | 49, 131, 965 |
| DdeI | CTNAG | 4 cut(s) | 372, 1047, 1085, 1197 |
| Eam1104I | CTCTTC | 2 cut(s) | 402, 462 |
| EarI | CTCTTC | 2 cut(s) | 402, 462 |
| Eco130I | CCWWGG | 3 cut(s) | 613, 728, 1003 |
| Eco32I | GATATC | 1 cut(s) | 926 |
| Eco47I | GGWCC | 1 cut(s) | 1021 |
| Eco57I | CTGAAG | 1 cut(s) | 846 |
| EcoO109I | RGGNCCY | 1 cut(s) | 281 |
| EcoRI | GAATTC | 3 cut(s) | 37, 157, 584 |
| EcoRV | GATATC | 1 cut(s) | 926 |
| EcoT14I | CCWWGG | 3 cut(s) | 613, 728, 1003 |
| EcoT22I | ATGCAT | 2 cut(s) | 440, 747 |
| ErhI | CCWWGG | 3 cut(s) | 613, 728, 1003 |
| FaeI | CATG | 3 cut(s) | 175, 189, 773 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FaqI | GGGAC | 1 cut(s) | 922 |
| FatI | CATG | 3 cut(s) | 171, 185, 769 |
| FauI | CCCGC | 1 cut(s) | 1087 |
| FbaI | TGATCA | 1 cut(s) | 825 |
| FokI | GGATG | 2 cut(s) | 233, 418 |
| FspBI | CTAG | 3 cut(s) | 11, 288, 444 |
| FspI | TGCGCA | 1 cut(s) | 94 |
| GlaI | GCGC | 1 cut(s) | 94 |
| HaeIII | GGCC | 1 cut(s) | 283 |
| HgaI | GACGC | 1 cut(s) | 972 |
| HhaI | GCGC | 1 cut(s) | 95 |
| Hin1I | GRCGYC | 1 cut(s) | 983 |
| Hin1II | CATG | 3 cut(s) | 175, 189, 773 |
| Hin6I | GCGC | 1 cut(s) | 93 |
| HinP1I | GCGC | 1 cut(s) | 93 |
| HindIII | AAGCTT | 2 cut(s) | 201, 858 |
| HinfI | GANTC | 3 cut(s) | 14, 737, 1178 |
| HphI | GGTGA | 3 cut(s) | 54, 434, 835 |
| Hpy166II | GTNNAC | 2 cut(s) | 411, 1021 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 865, 988 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 251, 334, 581, 829 |
| Hpy8I | GTNNAC | 2 cut(s) | 411, 1021 |
| HpyAV | CCTTC | 3 cut(s) | 805, 882, 901 |
| HpyCH4III | ACNGT | 1 cut(s) | 979 |
| HpyCH4IV | ACGT | 1 cut(s) | 717 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 701, 704, 968, 989 |
| HpyF3I | CTNAG | 4 cut(s) | 372, 1047, 1085, 1197 |
| HpySE526I | ACGT | 1 cut(s) | 717 |
| Hsp92I | GRCGYC | 1 cut(s) | 983 |
| Hsp92II | CATG | 3 cut(s) | 175, 189, 773 |
| HspAI | GCGC | 1 cut(s) | 93 |
| Ksp22I | TGATCA | 1 cut(s) | 825 |
| LmnI | GCTCC | 1 cut(s) | 1091 |
| LpnPI | CCDG | 6 cut(s) | 78, 236, 705, 824, 981, 1145 |
| LweI | GCATC | 2 cut(s) | 754, 793 |
| MaeI | CTAG | 3 cut(s) | 11, 288, 444 |
| MaeII | ACGT | 1 cut(s) | 717 |
| MaeIII | GTNAC | 3 cut(s) | 379, 718, 1190 |
| MbiI | CCGCTC | 1 cut(s) | 1094 |
| MfeI | CAATTG | 1 cut(s) | 414 |
| MflI | RGATCY | 7 cut(s) | 178, 336, 451, 520, 556, 617, 688 |
| MhlI | GDGCHC | 2 cut(s) | 117, 413 |
| MlyI | GAGTC | 2 cut(s) | 8, 746 |
| MmeI | TCCRAC | 2 cut(s) | 156, 1131 |
| Mph1103I | ATGCAT | 2 cut(s) | 440, 747 |
| MseI | TTAA | 3 cut(s) | 216, 324, 525 |
| MslI | CAYNNNNRTG | 2 cut(s) | 479, 821 |
| MspA1I | CMGCKG | 1 cut(s) | 695 |
| MspCI | CTTAAG | 1 cut(s) | 215 |
| MunI | CAATTG | 1 cut(s) | 414 |
| Mva1269I | GAATGC | 3 cut(s) | 30, 919, 995 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 701, 704, 968, 989 |
| NlaIII | CATG | 3 cut(s) | 175, 189, 773 |
| NlaIV | GGNNCC | 4 cut(s) | 453, 475, 1023, 1116 |
| NmuCI | GTSAC | 2 cut(s) | 718, 1190 |
| NsbI | TGCGCA | 1 cut(s) | 94 |
| NsiI | ATGCAT | 2 cut(s) | 440, 747 |
| NspI | RCATGY | 1 cut(s) | 189 |
| NspV | TTCGAA | 1 cut(s) | 875 |
| PaeI | GCATGC | 1 cut(s) | 189 |
| PaqCI | CACCTGC | 1 cut(s) | 73 |
| PctI | GAATGC | 3 cut(s) | 30, 919, 995 |
| PfeI | GAWTC | 1 cut(s) | 1178 |
| PleI | GAGTC | 2 cut(s) | 8, 745 |
| PpsI | GAGTC | 2 cut(s) | 8, 745 |
| PspN4I | GGNNCC | 4 cut(s) | 453, 475, 1023, 1116 |
| PspPI | GGNCC | 2 cut(s) | 281, 1021 |
| PstI | CTGCAG | 3 cut(s) | 298, 513, 703 |
| PstNI | CAGNNNCTG | 1 cut(s) | 698 |
| PsuI | RGATCY | 7 cut(s) | 178, 336, 451, 520, 556, 617, 688 |
| PvuII | CAGCTG | 1 cut(s) | 695 |
| RsaI | GTAC | 3 cut(s) | 50, 132, 966 |
| RsaNI | GTAC | 3 cut(s) | 49, 131, 965 |
| RseI | CAYNNNNRTG | 2 cut(s) | 479, 821 |
| SaqAI | TTAA | 3 cut(s) | 216, 324, 525 |
| Sau96I | GGNCC | 2 cut(s) | 281, 1021 |
| SchI | GAGTC | 2 cut(s) | 8, 746 |
| SduI | GDGCHC | 2 cut(s) | 117, 413 |
| SfaNI | GCATC | 2 cut(s) | 754, 793 |
| SfcI | CTRYAG | 4 cut(s) | 294, 509, 699, 1133 |
| SfuI | TTCGAA | 1 cut(s) | 875 |
| SinI | GGWCC | 1 cut(s) | 1021 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 479, 821 |
| SmlI | CTYRAG | 5 cut(s) | 99, 215, 332, 655, 1072 |
| SmoI | CTYRAG | 5 cut(s) | 99, 215, 332, 655, 1072 |
| SphI | GCATGC | 1 cut(s) | 189 |
| SsiI | CCGC | 2 cut(s) | 384, 1094 |
| SspMI | CTAG | 3 cut(s) | 11, 288, 444 |
| StyI | CCWWGG | 3 cut(s) | 613, 728, 1003 |
| TaaI | ACNGT | 1 cut(s) | 979 |
| TaiI | ACGT | 1 cut(s) | 720 |
| TaqI | TCGA | 4 cut(s) | 479, 636, 735, 875 |
| TatI | WGTACW | 1 cut(s) | 48 |
| TfiI | GAWTC | 1 cut(s) | 1178 |
| Tru1I | TTAA | 3 cut(s) | 216, 324, 525 |
| Tru9I | TTAA | 3 cut(s) | 216, 324, 525 |
| TscAI | CASTG | 1 cut(s) | 1201 |
| TseFI | GTSAC | 2 cut(s) | 718, 1190 |
| Tsp45I | GTSAC | 2 cut(s) | 718, 1190 |
| TspDTI | ATGAA | 5 cut(s) | 160, 237, 360, 497, 654 |
| TspRI | CASTG | 1 cut(s) | 1201 |
| Vha464I | CTTAAG | 1 cut(s) | 215 |
| VneI | GTGCAC | 1 cut(s) | 409 |
| VpaK11BI | GGWCC | 1 cut(s) | 1021 |
| XapI | RAATTY | 6 cut(s) | 37, 157, 326, 531, 584, 891 |
| XceI | RCATGY | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 11, 288, 444 |
| Zsp2I | ATGCAT | 2 cut(s) | 440, 747 |