BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 86 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AfaI | GTAC | 2 cut(s) | 117, 170 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AflII | CTTAAG | 1 cut(s) | 212 |
| AgsI | TTSAA | 2 cut(s) | 55, 235 |
| AluBI | AGCT | 1 cut(s) | 231 |
| AluI | AGCT | 1 cut(s) | 231 |
| ApeKI | GCWGC | 1 cut(s) | 99 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| AspLEI | GCGC | 1 cut(s) | 88 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| BaeGI | GKGCMC | 1 cut(s) | 189 |
| BbvI | GCAGC | 1 cut(s) | 111 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 98, 166, 200 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BfrI | CTTAAG | 1 cut(s) | 212 |
| BisI | GCNGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 1 cut(s) | 101 |
| BmcAI | AGTACT | 1 cut(s) | 117 |
| Bme1390I | CCNGG | 1 cut(s) | 155 |
| BmrFI | CCNGG | 1 cut(s) | 155 |
| BmsI | GCATC | 2 cut(s) | 111, 171 |
| BpmI | CTGGAG | 1 cut(s) | 143 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| BsaAI | YACGTR | 1 cut(s) | 172 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse1I | ACTGG | 1 cut(s) | 126 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 2 cut(s) | 86, 289 |
| BseNI | ACTGG | 1 cut(s) | 126 |
| BseSI | GKGCMC | 1 cut(s) | 189 |
| BseXI | GCAGC | 1 cut(s) | 111 |
| Bsh1236I | CGCG | 1 cut(s) | 86 |
| BsiSI | CCGG | 1 cut(s) | 154 |
| BslFI | GGGAC | 2 cut(s) | 170, 223 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmFI | GGGAC | 2 cut(s) | 170, 223 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| BspCNI | CTCAG | 2 cut(s) | 87, 288 |
| BspFNI | CGCG | 1 cut(s) | 86 |
| BspHI | TCATGA | 1 cut(s) | 9 |
| BspTI | CTTAAG | 1 cut(s) | 212 |
| BsrI | ACTGG | 1 cut(s) | 126 |
| BstAFI | CTTAAG | 1 cut(s) | 212 |
| BstBAI | YACGTR | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 1 cut(s) | 73 |
| BstDEI | CTNAG | 2 cut(s) | 95, 275 |
| BstFNI | CGCG | 1 cut(s) | 86 |
| BstHHI | GCGC | 1 cut(s) | 88 |
| BstSCI | CCNGG | 1 cut(s) | 153 |
| BstSLI | GKGCMC | 1 cut(s) | 189 |
| BstUI | CGCG | 1 cut(s) | 86 |
| BstV1I | GCAGC | 1 cut(s) | 111 |
| BtgZI | GCGATG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 2 cut(s) | 189, 283 |
| Cac8I | GCNNGC | 1 cut(s) | 73 |
| CciI | TCATGA | 1 cut(s) | 9 |
| CfoI | GCGC | 1 cut(s) | 88 |
| Csp6I | GTAC | 2 cut(s) | 116, 169 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 259, 294 |
| CviAII | CATG | 3 cut(s) | 10, 134, 191 |
| CviJI | RGCY | 2 cut(s) | 71, 231 |
| CviKI_1 | RGCY | 2 cut(s) | 71, 231 |
| CviQI | GTAC | 2 cut(s) | 116, 169 |
| DdeI | CTNAG | 2 cut(s) | 95, 275 |
| DraI | TTTAAA | 1 cut(s) | 36 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 3 cut(s) | 13, 137, 194 |
| FaiI | YATR | 7 cut(s) | 6, 11, 135, 140, 192, 256, 291 |
| FaqI | GGGAC | 2 cut(s) | 170, 223 |
| FatI | CATG | 3 cut(s) | 9, 133, 190 |
| Fnu4HI | GCNGC | 1 cut(s) | 100 |
| Fsp4HI | GCNGC | 1 cut(s) | 100 |
| GlaI | GCGC | 1 cut(s) | 87 |
| GluI | GCNGC | 1 cut(s) | 100 |
| GsuI | CTGGAG | 1 cut(s) | 143 |
| HapII | CCGG | 1 cut(s) | 154 |
| HhaI | GCGC | 1 cut(s) | 88 |
| Hin1II | CATG | 3 cut(s) | 13, 137, 194 |
| Hin6I | GCGC | 1 cut(s) | 86 |
| HinP1I | GCGC | 1 cut(s) | 86 |
| HincII | GTYRAC | 1 cut(s) | 62 |
| HindII | GTYRAC | 1 cut(s) | 62 |
| HpaII | CCGG | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 62 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 2 cut(s) | 10, 262 |
| Hpy8I | GTNNAC | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 11, 61 |
| HpyCH4IV | ACGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 275 |
| HpySE526I | ACGT | 1 cut(s) | 171 |
| Hsp92II | CATG | 3 cut(s) | 13, 137, 194 |
| HspAI | GCGC | 1 cut(s) | 86 |
| LpnPI | CCDG | 3 cut(s) | 57, 107, 167 |
| Lsp1109I | GCAGC | 1 cut(s) | 111 |
| LweI | GCATC | 2 cut(s) | 111, 171 |
| MaeII | ACGT | 1 cut(s) | 171 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MboII | GAAGA | 2 cut(s) | 32, 38 |
| MfeI | CAATTG | 1 cut(s) | 76 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MluCI | AATT | 1 cut(s) | 76 |
| MnlI | CCTC | 2 cut(s) | 92, 187 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MseI | TTAA | 3 cut(s) | 35, 144, 213 |
| MspCI | CTTAAG | 1 cut(s) | 212 |
| MspI | CCGG | 1 cut(s) | 154 |
| MspR9I | CCNGG | 1 cut(s) | 155 |
| MunI | CAATTG | 1 cut(s) | 76 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| MvnI | CGCG | 1 cut(s) | 86 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NlaIII | CATG | 3 cut(s) | 13, 137, 194 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 9 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PkrI | GCNGC | 1 cut(s) | 101 |
| Ppu21I | YACGTR | 1 cut(s) | 172 |
| RsaI | GTAC | 2 cut(s) | 117, 170 |
| RsaNI | GTAC | 2 cut(s) | 116, 169 |
| SaqAI | TTAA | 3 cut(s) | 35, 144, 213 |
| SatI | GCNGC | 1 cut(s) | 100 |
| ScaI | AGTACT | 1 cut(s) | 117 |
| ScrFI | CCNGG | 1 cut(s) | 155 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| SetI | ASST | 3 cut(s) | 22, 174, 233 |
| SfaNI | GCATC | 2 cut(s) | 111, 171 |
| SmlI | CTYRAG | 1 cut(s) | 212 |
| SmoI | CTYRAG | 1 cut(s) | 212 |
| Sse9I | AATT | 1 cut(s) | 76 |
| StyD4I | CCNGG | 1 cut(s) | 153 |
| TaiI | ACGT | 1 cut(s) | 174 |
| TasI | AATT | 1 cut(s) | 76 |
| TatI | WGTACW | 1 cut(s) | 115 |
| Tru1I | TTAA | 3 cut(s) | 35, 144, 213 |
| Tru9I | TTAA | 3 cut(s) | 35, 144, 213 |
| TscAI | CASTG | 2 cut(s) | 189, 283 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 99 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspRI | CASTG | 2 cut(s) | 189, 283 |
| Vha464I | CTTAAG | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| ZrmI | AGTACT | 1 cut(s) | 117 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |