Domain of unknown function (DUF4413)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 206 - 304 | 1.1e-27 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 334 |
| Acc65I | GGTACC | 1 cut(s) | 620 |
| AccB1I | GGYRCC | 1 cut(s) | 620 |
| AciI | CCGC | 1 cut(s) | 475 |
| AclI | AACGTT | 2 cut(s) | 155, 380 |
| AclWI | GGATC | 1 cut(s) | 791 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 223, 280, 824, 840 |
| AfaI | GTAC | 2 cut(s) | 175, 622 |
| AgeI | ACCGGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 7 cut(s) | 197, 280, 814, 824, 835, 959, 966 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 632, 664 |
| AluBI | AGCT | 4 cut(s) | 395, 509, 583, 857 |
| AluI | AGCT | 4 cut(s) | 395, 509, 583, 857 |
| Alw21I | GWGCWC | 1 cut(s) | 271 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| Alw44I | GTGCAC | 1 cut(s) | 267 |
| AlwI | GGATC | 1 cut(s) | 791 |
| AoxI | GGCC | 3 cut(s) | 3, 361, 968 |
| ApaLI | GTGCAC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 3 cut(s) | 392, 583, 857 |
| ApoI | RAATTY | 4 cut(s) | 223, 280, 824, 840 |
| AsiGI | ACCGGT | 1 cut(s) | 356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| Asp718I | GGTACC | 1 cut(s) | 620 |
| AspS9I | GGNCC | 2 cut(s) | 354, 362 |
| AvaII | GGWCC | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 1 cut(s) | 271 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 620 |
| BauI | CACGAG | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 271 |
| BbvI | GCAGC | 3 cut(s) | 404, 570, 844 |
| BccI | CCATC | 5 cut(s) | 106, 147, 290, 444, 727 |
| BceAI | ACGGC | 2 cut(s) | 764, 955 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 592, 626 |
| BciVI | GTATCC | 2 cut(s) | 639, 946 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 3 cut(s) | 339, 519, 1032 |
| BfuI | GTATCC | 2 cut(s) | 639, 946 |
| BisI | GCNGC | 3 cut(s) | 393, 584, 858 |
| BlsI | GCNGC | 3 cut(s) | 394, 585, 859 |
| Bme18I | GGWCC | 1 cut(s) | 354 |
| BmgT120I | GGNCC | 2 cut(s) | 354, 362 |
| BmiI | GGNNCC | 1 cut(s) | 622 |
| BmsI | GCATC | 4 cut(s) | 76, 175, 994, 1003 |
| BpuEI | CTTGAG | 1 cut(s) | 713 |
| BsaAI | YACGTR | 1 cut(s) | 934 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1065 |
| BsaI | GGTCTC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 2 cut(s) | 387, 1089 |
| BsaWI | WCCGGW | 3 cut(s) | 356, 552, 617 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1065 |
| BseDI | CCNNGG | 2 cut(s) | 387, 1089 |
| BseGI | GGATG | 7 cut(s) | 301, 310, 412, 538, 742, 997, 1009 |
| BseJI | GATNNNNATC | 1 cut(s) | 1065 |
| BseRI | GAGGAG | 1 cut(s) | 1089 |
| BseSI | GKGCMC | 1 cut(s) | 271 |
| BseXI | GCAGC | 3 cut(s) | 404, 570, 844 |
| Bsh1285I | CGRYCG | 1 cut(s) | 606 |
| BshFI | GGCC | 3 cut(s) | 5, 363, 970 |
| BshNI | GGYRCC | 1 cut(s) | 620 |
| BshTI | ACCGGT | 1 cut(s) | 356 |
| BsiEI | CGRYCG | 1 cut(s) | 606 |
| BsiHKAI | GWGCWC | 1 cut(s) | 271 |
| BsiSI | CCGG | 3 cut(s) | 357, 553, 618 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsnI | GGCC | 3 cut(s) | 5, 363, 970 |
| Bso31I | GGTCTC | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 218, 796 |
| BspACI | CCGC | 1 cut(s) | 475 |
| BspANI | GGCC | 3 cut(s) | 5, 363, 970 |
| BspLI | GGNNCC | 1 cut(s) | 622 |
| BspPI | GGATC | 1 cut(s) | 791 |
| BspT107I | GGYRCC | 1 cut(s) | 620 |
| BspTNI | GGTCTC | 1 cut(s) | 320 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 2 cut(s) | 387, 1089 |
| BssMI | GATC | 2 cut(s) | 218, 796 |
| BssSI | CACGAG | 1 cut(s) | 560 |
| BssT1I | CCWWGG | 1 cut(s) | 387 |
| Bst2BI | CACGAG | 1 cut(s) | 560 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 499 |
| BstBAI | YACGTR | 1 cut(s) | 934 |
| BstC8I | GCNNGC | 2 cut(s) | 397, 888 |
| BstDEI | CTNAG | 1 cut(s) | 684 |
| BstF5I | GGATG | 7 cut(s) | 301, 310, 412, 538, 742, 997, 1009 |
| BstKTI | GATC | 2 cut(s) | 221, 799 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 2 cut(s) | 218, 796 |
| BstMCI | CGRYCG | 1 cut(s) | 606 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 392, 1013 |
| BstNSI | RCATGY | 2 cut(s) | 417, 921 |
| BstSLI | GKGCMC | 1 cut(s) | 271 |
| BstV1I | GCAGC | 3 cut(s) | 404, 570, 844 |
| BstX2I | RGATCY | 1 cut(s) | 796 |
| BstYI | RGATCY | 1 cut(s) | 796 |
| BsuI | GTATCC | 2 cut(s) | 639, 946 |
| BsuRI | GGCC | 3 cut(s) | 5, 363, 970 |
| BtgZI | GCGATG | 1 cut(s) | 990 |
| BtsCI | GGATG | 7 cut(s) | 301, 310, 412, 538, 742, 997, 1009 |
| Cac8I | GCNNGC | 2 cut(s) | 397, 888 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 2 cut(s) | 354, 362 |
| Csp6I | GTAC | 2 cut(s) | 174, 621 |
| CspAI | ACCGGT | 1 cut(s) | 356 |
| CviAII | CATG | 6 cut(s) | 83, 190, 414, 918, 952, 1000 |
| CviQI | GTAC | 2 cut(s) | 174, 621 |
| DdeI | CTNAG | 1 cut(s) | 684 |
| DpnI | GATC | 2 cut(s) | 220, 798 |
| DpnII | GATC | 2 cut(s) | 218, 796 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 334 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 334 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 1 cut(s) | 387 |
| Eco31I | GGTCTC | 1 cut(s) | 320 |
| Eco47I | GGWCC | 1 cut(s) | 354 |
| EcoT14I | CCWWGG | 1 cut(s) | 387 |
| EcoT22I | ATGCAT | 1 cut(s) | 919 |
| ErhI | CCWWGG | 1 cut(s) | 387 |
| FaeI | CATG | 6 cut(s) | 86, 193, 417, 921, 955, 1003 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1040, 1072 |
| FatI | CATG | 6 cut(s) | 82, 189, 413, 917, 951, 999 |
| FauNDI | CATATG | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 3 cut(s) | 393, 584, 858 |
| FokI | GGATG | 7 cut(s) | 308, 317, 419, 545, 749, 1004, 1016 |
| Fsp4HI | GCNGC | 3 cut(s) | 393, 584, 858 |
| FspBI | CTAG | 3 cut(s) | 339, 519, 1032 |
| GluI | GCNGC | 3 cut(s) | 393, 584, 858 |
| HaeIII | GGCC | 3 cut(s) | 5, 363, 970 |
| HapII | CCGG | 3 cut(s) | 357, 553, 618 |
| Hin1II | CATG | 6 cut(s) | 86, 193, 417, 921, 955, 1003 |
| HincII | GTYRAC | 2 cut(s) | 50, 159 |
| HindII | GTYRAC | 2 cut(s) | 50, 159 |
| HinfI | GANTC | 6 cut(s) | 29, 46, 556, 695, 876, 1028 |
| HpaI | GTTAAC | 1 cut(s) | 159 |
| HpaII | CCGG | 3 cut(s) | 357, 553, 618 |
| Hpy166II | GTNNAC | 4 cut(s) | 50, 80, 159, 269 |
| Hpy188I | TCNGA | 4 cut(s) | 700, 940, 1054, 1073 |
| Hpy188III | TCNNGA | 3 cut(s) | 314, 562, 880 |
| Hpy8I | GTNNAC | 4 cut(s) | 50, 80, 159, 269 |
| Hpy99I | CGWCG | 1 cut(s) | 704 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 499 |
| HpyCH4IV | ACGT | 5 cut(s) | 155, 380, 566, 702, 933 |
| HpyCH4V | TGCA | 9 cut(s) | 43, 89, 253, 269, 413, 586, 663, 860, 917 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 392, 1013 |
| HpyF3I | CTNAG | 1 cut(s) | 684 |
| HpySE526I | ACGT | 5 cut(s) | 155, 380, 566, 702, 933 |
| Hsp92II | CATG | 6 cut(s) | 86, 193, 417, 921, 955, 1003 |
| KpnI | GGTACC | 1 cut(s) | 624 |
| KspAI | GTTAAC | 1 cut(s) | 159 |
| Kzo9I | GATC | 2 cut(s) | 218, 796 |
| LmnI | GCTCC | 1 cut(s) | 759 |
| LpnPI | CCDG | 4 cut(s) | 370, 519, 566, 631 |
| Lsp1109I | GCAGC | 3 cut(s) | 404, 570, 844 |
| LweI | GCATC | 4 cut(s) | 76, 175, 994, 1003 |
| MaeI | CTAG | 3 cut(s) | 339, 519, 1032 |
| MaeII | ACGT | 5 cut(s) | 155, 380, 566, 702, 933 |
| MaeIII | GTNAC | 3 cut(s) | 143, 208, 562 |
| MalI | GATC | 2 cut(s) | 220, 798 |
| MboI | GATC | 2 cut(s) | 218, 796 |
| MboII | GAAGA | 3 cut(s) | 386, 728, 742 |
| MfeI | CAATTG | 3 cut(s) | 401, 587, 774 |
| MflI | RGATCY | 1 cut(s) | 796 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 4 cut(s) | 55, 704, 885, 1022 |
| MmeI | TCCRAC | 4 cut(s) | 110, 465, 723, 1077 |
| MnlI | CCTC | 6 cut(s) | 51, 810, 876, 1067, 1070, 1084 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 919 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 158, 512, 669 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 3 cut(s) | 357, 553, 618 |
| MunI | CAATTG | 3 cut(s) | 401, 587, 774 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 392, 1013 |
| NdeI | CATATG | 1 cut(s) | 255 |
| NdeII | GATC | 2 cut(s) | 218, 796 |
| NlaIII | CATG | 6 cut(s) | 86, 193, 417, 921, 955, 1003 |
| NlaIV | GGNNCC | 1 cut(s) | 622 |
| NmuCI | GTSAC | 2 cut(s) | 208, 562 |
| NsiI | ATGCAT | 1 cut(s) | 919 |
| NspI | RCATGY | 2 cut(s) | 417, 921 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 2 cut(s) | 29, 556 |
| PflFI | GACNNNGTC | 1 cut(s) | 899 |
| PinAI | ACCGGT | 1 cut(s) | 356 |
| PkrI | GCNGC | 3 cut(s) | 394, 585, 859 |
| PleI | GAGTC | 4 cut(s) | 54, 703, 884, 1022 |
| PpsI | GAGTC | 4 cut(s) | 54, 703, 884, 1022 |
| Ppu21I | YACGTR | 1 cut(s) | 934 |
| Psp1406I | AACGTT | 2 cut(s) | 155, 380 |
| PspN4I | GGNNCC | 1 cut(s) | 622 |
| PspPI | GGNCC | 2 cut(s) | 354, 362 |
| PsuI | RGATCY | 1 cut(s) | 796 |
| PsyI | GACNNNGTC | 1 cut(s) | 899 |
| RsaI | GTAC | 2 cut(s) | 175, 622 |
| RsaNI | GTAC | 2 cut(s) | 174, 621 |
| SaqAI | TTAA | 3 cut(s) | 158, 512, 669 |
| SatI | GCNGC | 3 cut(s) | 393, 584, 858 |
| Sau3AI | GATC | 2 cut(s) | 218, 796 |
| Sau96I | GGNCC | 2 cut(s) | 354, 362 |
| SchI | GAGTC | 4 cut(s) | 55, 704, 885, 1022 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SfaNI | GCATC | 4 cut(s) | 76, 175, 994, 1003 |
| SinI | GGWCC | 1 cut(s) | 354 |
| SmlI | CTYRAG | 1 cut(s) | 692 |
| SmoI | CTYRAG | 1 cut(s) | 692 |
| SsiI | CCGC | 1 cut(s) | 475 |
| SspMI | CTAG | 3 cut(s) | 339, 519, 1032 |
| StyI | CCWWGG | 1 cut(s) | 387 |
| TaaI | ACNGT | 2 cut(s) | 163, 499 |
| TaiI | ACGT | 5 cut(s) | 158, 383, 569, 705, 936 |
| TaqI | TCGA | 1 cut(s) | 802 |
| TaqII | GACCGA | 1 cut(s) | 620 |
| TfiI | GAWTC | 2 cut(s) | 29, 556 |
| Tru1I | TTAA | 3 cut(s) | 158, 512, 669 |
| Tru9I | TTAA | 3 cut(s) | 158, 512, 669 |
| TseFI | GTSAC | 2 cut(s) | 208, 562 |
| TseI | GCWGC | 3 cut(s) | 392, 583, 857 |
| Tsp45I | GTSAC | 2 cut(s) | 208, 562 |
| TspDTI | ATGAA | 3 cut(s) | 89, 723, 753 |
| Tth111I | GACNNNGTC | 1 cut(s) | 899 |
| VneI | GTGCAC | 1 cut(s) | 267 |
| VpaK11BI | GGWCC | 1 cut(s) | 354 |
| XapI | RAATTY | 4 cut(s) | 223, 280, 824, 840 |
| XceI | RCATGY | 2 cut(s) | 417, 921 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 3 cut(s) | 339, 519, 1032 |
| Zsp2I | ATGCAT | 1 cut(s) | 919 |