BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 35 |
| AciI | CCGC | 1 cut(s) | 252 |
| AcoI | YGGCCR | 1 cut(s) | 249 |
| AcsI | RAATTY | 1 cut(s) | 302 |
| AcuI | CTGAAG | 1 cut(s) | 114 |
| AfaI | GTAC | 2 cut(s) | 66, 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AflII | CTTAAG | 1 cut(s) | 161 |
| AgsI | TTSAA | 4 cut(s) | 176, 265, 307, 367 |
| AluBI | AGCT | 3 cut(s) | 172, 398, 402 |
| AluI | AGCT | 3 cut(s) | 172, 398, 402 |
| Alw21I | GWGCWC | 1 cut(s) | 361 |
| Alw26I | GTCTC | 1 cut(s) | 341 |
| Alw44I | GTGCAC | 1 cut(s) | 357 |
| AoxI | GGCC | 1 cut(s) | 249 |
| ApaLI | GTGCAC | 1 cut(s) | 357 |
| ApeKI | GCWGC | 1 cut(s) | 48 |
| ApoI | RAATTY | 1 cut(s) | 302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AsuC2I | CCSGG | 1 cut(s) | 104 |
| AsuNHI | GCTAGC | 1 cut(s) | 398 |
| BaeGI | GKGCMC | 2 cut(s) | 138, 361 |
| Bbv12I | GWGCWC | 1 cut(s) | 361 |
| BbvI | GCAGC | 1 cut(s) | 60 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 13, 47, 115, 149 |
| BciVI | GTATCC | 1 cut(s) | 280 |
| BcnI | CCSGG | 1 cut(s) | 104 |
| BcoDI | GTCTC | 1 cut(s) | 341 |
| BfaI | CTAG | 2 cut(s) | 395, 399 |
| BfrI | CTTAAG | 1 cut(s) | 161 |
| BfuI | GTATCC | 1 cut(s) | 280 |
| BisI | GCNGC | 2 cut(s) | 49, 252 |
| BlsI | GCNGC | 2 cut(s) | 50, 253 |
| BmcAI | AGTACT | 1 cut(s) | 66 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 120 |
| BmtI | GCTAGC | 1 cut(s) | 402 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BpuMI | CCSGG | 1 cut(s) | 104 |
| BsaAI | YACGTR | 2 cut(s) | 121, 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 1 cut(s) | 75 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseGI | GGATG | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseMII | CTCAG | 3 cut(s) | 35, 233, 249 |
| BseNI | ACTGG | 1 cut(s) | 75 |
| BseSI | GKGCMC | 2 cut(s) | 138, 361 |
| BseXI | GCAGC | 1 cut(s) | 60 |
| Bsh1236I | CGCG | 1 cut(s) | 35 |
| BshFI | GGCC | 1 cut(s) | 251 |
| BsiHKAI | GWGCWC | 1 cut(s) | 361 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BslFI | GGGAC | 2 cut(s) | 119, 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmAI | GTCTC | 1 cut(s) | 341 |
| BsmFI | GGGAC | 2 cut(s) | 119, 164 |
| BsmI | GAATGC | 1 cut(s) | 82 |
| BsnI | GGCC | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 2 cut(s) | 138, 361 |
| BspACI | CCGC | 1 cut(s) | 252 |
| BspANI | GGCC | 1 cut(s) | 251 |
| BspCNI | CTCAG | 3 cut(s) | 36, 232, 250 |
| BspFNI | CGCG | 1 cut(s) | 35 |
| BspOI | GCTAGC | 1 cut(s) | 402 |
| BspTI | CTTAAG | 1 cut(s) | 161 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 75 |
| BstAFI | CTTAAG | 1 cut(s) | 161 |
| BstBAI | YACGTR | 2 cut(s) | 121, 291 |
| BstC8I | GCNNGC | 2 cut(s) | 22, 400 |
| BstDEI | CTNAG | 3 cut(s) | 44, 219, 258 |
| BstF5I | GGATG | 1 cut(s) | 390 |
| BstFNI | CGCG | 1 cut(s) | 35 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstMAI | GTCTC | 1 cut(s) | 341 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstSLI | GKGCMC | 2 cut(s) | 138, 361 |
| BstSNI | TACGTA | 1 cut(s) | 291 |
| BstUI | CGCG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 60 |
| BsuI | GTATCC | 1 cut(s) | 280 |
| BsuRI | GGCC | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 390 |
| BtsIMutI | CAGTG | 2 cut(s) | 138, 227 |
| Cac8I | GCNNGC | 2 cut(s) | 22, 400 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Csp6I | GTAC | 2 cut(s) | 65, 118 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 203, 238 |
| CviAII | CATG | 2 cut(s) | 83, 140 |
| CviJI | RGCY | 7 cut(s) | 20, 172, 251, 317, 370, 398, 402 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 172, 251, 317, 370, 398, 402 |
| CviQI | GTAC | 2 cut(s) | 65, 118 |
| DdeI | CTNAG | 3 cut(s) | 44, 219, 258 |
| EaeI | YGGCCR | 1 cut(s) | 249 |
| Eco105I | TACGTA | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 1 cut(s) | 114 |
| EcoRI | GAATTC | 1 cut(s) | 302 |
| FaeI | CATG | 2 cut(s) | 86, 143 |
| FaiI | YATR | 9 cut(s) | 12, 14, 84, 89, 141, 200, 235, 294, 388 |
| FaqI | GGGAC | 2 cut(s) | 119, 164 |
| FatI | CATG | 2 cut(s) | 82, 139 |
| Fnu4HI | GCNGC | 2 cut(s) | 49, 252 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 2 cut(s) | 49, 252 |
| FspBI | CTAG | 2 cut(s) | 395, 399 |
| GlaI | GCGC | 1 cut(s) | 36 |
| GluI | GCNGC | 2 cut(s) | 49, 252 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeIII | GGCC | 1 cut(s) | 251 |
| HapII | CCGG | 1 cut(s) | 103 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1II | CATG | 2 cut(s) | 86, 143 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HincII | GTYRAC | 1 cut(s) | 7 |
| HindII | GTYRAC | 1 cut(s) | 7 |
| HinfI | GANTC | 2 cut(s) | 296, 349 |
| HpaII | CCGG | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 359 |
| Hpy188I | TCNGA | 3 cut(s) | 45, 259, 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 359 |
| HpyCH4IV | ACGT | 2 cut(s) | 120, 290 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 359 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 219, 258 |
| HpySE526I | ACGT | 2 cut(s) | 120, 290 |
| Hsp92II | CATG | 2 cut(s) | 86, 143 |
| HspAI | GCGC | 1 cut(s) | 35 |
| LpnPI | CCDG | 3 cut(s) | 6, 56, 116 |
| Lsp1109I | GCAGC | 1 cut(s) | 60 |
| LweI | GCATC | 1 cut(s) | 120 |
| MaeI | CTAG | 2 cut(s) | 395, 399 |
| MaeII | ACGT | 2 cut(s) | 120, 290 |
| MaeIII | GTNAC | 1 cut(s) | 121 |
| MboII | GAAGA | 1 cut(s) | 341 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MhlI | GDGCHC | 2 cut(s) | 138, 361 |
| MluCI | AATT | 3 cut(s) | 25, 302, 372 |
| MlyI | GAGTC | 1 cut(s) | 343 |
| MnlI | CCTC | 3 cut(s) | 41, 136, 331 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 2 cut(s) | 93, 162 |
| MspCI | CTTAAG | 1 cut(s) | 161 |
| MspI | CCGG | 1 cut(s) | 103 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| MunI | CAATTG | 1 cut(s) | 25 |
| Mva1269I | GAATGC | 1 cut(s) | 82 |
| MvnI | CGCG | 1 cut(s) | 35 |
| NciI | CCSGG | 1 cut(s) | 104 |
| NheI | GCTAGC | 1 cut(s) | 398 |
| NlaIII | CATG | 2 cut(s) | 86, 143 |
| NmuCI | GTSAC | 1 cut(s) | 121 |
| PctI | GAATGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 296 |
| PfoI | TCCNGGA | 1 cut(s) | 102 |
| PkrI | GCNGC | 2 cut(s) | 50, 253 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| Ppu21I | YACGTR | 2 cut(s) | 121, 291 |
| RsaI | GTAC | 2 cut(s) | 66, 119 |
| RsaNI | GTAC | 2 cut(s) | 65, 118 |
| SaqAI | TTAA | 2 cut(s) | 93, 162 |
| SatI | GCNGC | 2 cut(s) | 49, 252 |
| ScaI | AGTACT | 1 cut(s) | 66 |
| SchI | GAGTC | 1 cut(s) | 343 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SduI | GDGCHC | 2 cut(s) | 138, 361 |
| SetI | ASST | 5 cut(s) | 123, 174, 293, 400, 404 |
| SfaNI | GCATC | 1 cut(s) | 120 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| SnaBI | TACGTA | 1 cut(s) | 291 |
| Sse9I | AATT | 3 cut(s) | 25, 302, 372 |
| SsiI | CCGC | 1 cut(s) | 252 |
| SspMI | CTAG | 2 cut(s) | 395, 399 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| TaiI | ACGT | 2 cut(s) | 123, 293 |
| TasI | AATT | 3 cut(s) | 25, 302, 372 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TauI | GCSGC | 1 cut(s) | 254 |
| TfiI | GAWTC | 1 cut(s) | 296 |
| Tru1I | TTAA | 2 cut(s) | 93, 162 |
| Tru9I | TTAA | 2 cut(s) | 93, 162 |
| TscAI | CASTG | 2 cut(s) | 138, 227 |
| TseFI | GTSAC | 1 cut(s) | 121 |
| TseI | GCWGC | 1 cut(s) | 48 |
| Tsp45I | GTSAC | 1 cut(s) | 121 |
| TspRI | CASTG | 2 cut(s) | 138, 227 |
| Vha464I | CTTAAG | 1 cut(s) | 161 |
| VneI | GTGCAC | 1 cut(s) | 357 |
| XapI | RAATTY | 1 cut(s) | 302 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 395, 399 |
| ZrmI | AGTACT | 1 cut(s) | 66 |