Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 221 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 411 |
| AccBSI | CCGCTC | 1 cut(s) | 1604 |
| AccIII | TCCGGA | 1 cut(s) | 1042 |
| AciI | CCGC | 7 cut(s) | 227, 323, 326, 329, 621, 1030, 1604 |
| AclWI | GGATC | 7 cut(s) | 113, 126, 484, 497, 1582, 1649, 1814 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 5 cut(s) | 66, 1094, 1194, 1328, 1895 |
| AdeI | CACNNNGTG | 1 cut(s) | 885 |
| AfaI | GTAC | 9 cut(s) | 33, 296, 661, 1325, 1477, 1524, 1646, 1870, 2046 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 411, 804, 2103 |
| AflII | CTTAAG | 2 cut(s) | 71, 647 |
| AhlI | ACTAGT | 2 cut(s) | 1478, 1871 |
| AluBI | AGCT | 5 cut(s) | 745, 1246, 1360, 1832, 1948 |
| AluI | AGCT | 5 cut(s) | 745, 1246, 1360, 1832, 1948 |
| Alw26I | GTCTC | 2 cut(s) | 997, 1337 |
| AlwI | GGATC | 7 cut(s) | 113, 126, 484, 497, 1582, 1649, 1814 |
| Ama87I | CYCGRG | 2 cut(s) | 91, 1318 |
| Aor13HI | TCCGGA | 1 cut(s) | 1042 |
| AoxI | GGCC | 5 cut(s) | 3, 1023, 1302, 1758, 2161 |
| ApoI | RAATTY | 5 cut(s) | 66, 1094, 1194, 1328, 1895 |
| AspLEI | GCGC | 1 cut(s) | 701 |
| AspS9I | GGNCC | 7 cut(s) | 158, 414, 1037, 1303, 1450, 1759, 2161 |
| AsuC2I | CCSGG | 3 cut(s) | 92, 93, 800 |
| AsuHPI | GGTGA | 7 cut(s) | 536, 1024, 1081, 1174, 1280, 1294, 1997 |
| AvaI | CYCGRG | 2 cut(s) | 91, 1318 |
| AvaII | GGWCC | 4 cut(s) | 158, 414, 1037, 1450 |
| BamHI | GGATCC | 2 cut(s) | 118, 489 |
| BanII | GRGCYC | 2 cut(s) | 682, 2116 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1746, 1778 |
| BbsI | GAAGAC | 1 cut(s) | 649 |
| BccI | CCATC | 9 cut(s) | 145, 668, 725, 940, 1001, 1526, 1543, 1570, 2128 |
| BceAI | ACGGC | 1 cut(s) | 465 |
| BciVI | GTATCC | 1 cut(s) | 872 |
| BclI | TGATCA | 1 cut(s) | 250 |
| BcnI | CCSGG | 3 cut(s) | 92, 93, 800 |
| BcoDI | GTCTC | 2 cut(s) | 997, 1337 |
| BcuI | ACTAGT | 2 cut(s) | 1478, 1871 |
| BfaI | CTAG | 9 cut(s) | 99, 545, 606, 1352, 1479, 1526, 1767, 1782, 1872 |
| BfrI | CTTAAG | 2 cut(s) | 71, 647 |
| BfuI | GTATCC | 1 cut(s) | 872 |
| BisI | GCNGC | 2 cut(s) | 324, 327 |
| BlsI | GCNGC | 2 cut(s) | 325, 328 |
| BmcAI | AGTACT | 1 cut(s) | 1477 |
| Bme1390I | CCNGG | 3 cut(s) | 92, 93, 800 |
| Bme18I | GGWCC | 4 cut(s) | 158, 414, 1037, 1450 |
| BmeT110I | CYCGRG | 2 cut(s) | 91, 1318 |
| BmgT120I | GGNCC | 7 cut(s) | 158, 414, 1037, 1303, 1450, 1759, 2161 |
| BmiI | GGNNCC | 5 cut(s) | 120, 491, 1038, 1914, 2162 |
| BmrFI | CCNGG | 3 cut(s) | 92, 93, 800 |
| BmsI | GCATC | 3 cut(s) | 222, 751, 1093 |
| BoxI | GACNNNNGTC | 1 cut(s) | 649 |
| BpiI | GAAGAC | 1 cut(s) | 649 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 947, 979, 977, 1009 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1746 |
| BpuEI | CTTGAG | 2 cut(s) | 1232, 2025 |
| BpuMI | CCSGG | 3 cut(s) | 92, 93, 800 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1659 |
| BsaI | GGTCTC | 1 cut(s) | 997 |
| BsaJI | CCNNGG | 3 cut(s) | 91, 798, 1319 |
| BsaWI | WCCGGW | 2 cut(s) | 160, 1042 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 147, 177, 1117, 1147 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 411, 804, 2103 |
| Bse118I | RCCGGY | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 2 cut(s) | 16, 969 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1659 |
| BseAI | TCCGGA | 1 cut(s) | 1042 |
| BseDI | CCNNGG | 3 cut(s) | 91, 798, 1319 |
| BseGI | GGATG | 8 cut(s) | 156, 736, 794, 858, 1057, 1376, 1581, 1756 |
| BseJI | GATNNNNATC | 1 cut(s) | 1659 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 411, 804, 2103 |
| BseMI | GCAATG | 2 cut(s) | 16, 969 |
| BseRI | GAGGAG | 5 cut(s) | 1001, 1403, 1958, 2003, 2019 |
| BshFI | GGCC | 5 cut(s) | 5, 1025, 1304, 1760, 2163 |
| BsiHKCI | CYCGRG | 2 cut(s) | 91, 1318 |
| BsiSI | CCGG | 5 cut(s) | 35, 92, 161, 800, 1043 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 411, 804, 2103 |
| BsmAI | GTCTC | 2 cut(s) | 997, 1337 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| BsmI | GAATGC | 3 cut(s) | 14, 895, 1795 |
| BsnI | GGCC | 5 cut(s) | 5, 1025, 1304, 1760, 2163 |
| Bso31I | GGTCTC | 1 cut(s) | 997 |
| BsoBI | CYCGRG | 2 cut(s) | 91, 1318 |
| Bsp1286I | GDGCHC | 2 cut(s) | 682, 2116 |
| Bsp13I | TCCGGA | 1 cut(s) | 1042 |
| Bsp143I | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| BspACI | CCGC | 7 cut(s) | 227, 323, 326, 329, 621, 1030, 1604 |
| BspANI | GGCC | 5 cut(s) | 5, 1025, 1304, 1760, 2163 |
| BspEI | TCCGGA | 1 cut(s) | 1042 |
| BspLI | GGNNCC | 5 cut(s) | 120, 491, 1038, 1914, 2162 |
| BspPI | GGATC | 7 cut(s) | 113, 126, 484, 497, 1582, 1649, 1814 |
| BspTI | CTTAAG | 2 cut(s) | 71, 647 |
| BspTNI | GGTCTC | 1 cut(s) | 997 |
| BsrBI | CCGCTC | 1 cut(s) | 1604 |
| BsrDI | GCAATG | 2 cut(s) | 16, 969 |
| BsrFI | RCCGGY | 1 cut(s) | 34 |
| BssAI | RCCGGY | 1 cut(s) | 34 |
| BssECI | CCNNGG | 3 cut(s) | 91, 798, 1319 |
| BssMI | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| Bst4CI | ACNGT | 4 cut(s) | 595, 1162, 1777, 1852 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 2161 |
| BstAFI | CTTAAG | 2 cut(s) | 71, 647 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 18 |
| BstC8I | GCNNGC | 1 cut(s) | 14 |
| BstDEI | CTNAG | 9 cut(s) | 28, 746, 942, 1154, 1454, 1733, 1746, 1883, 1957 |
| BstF5I | GGATG | 8 cut(s) | 156, 736, 794, 858, 1057, 1376, 1581, 1756 |
| BstHHI | GCGC | 1 cut(s) | 701 |
| BstKTI | GATC | 8 cut(s) | 121, 253, 492, 1514, 1590, 1657, 1822, 1954 |
| BstMAI | GTCTC | 2 cut(s) | 997, 1337 |
| BstMBI | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 649 |
| BstSCI | CCNGG | 3 cut(s) | 90, 91, 798 |
| BstV2I | GAAGAC | 1 cut(s) | 649 |
| BstX2I | RGATCY | 3 cut(s) | 118, 489, 1587 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1033, 1636 |
| BstYI | RGATCY | 3 cut(s) | 118, 489, 1587 |
| BsuI | GTATCC | 1 cut(s) | 872 |
| BsuRI | GGCC | 5 cut(s) | 5, 1025, 1304, 1760, 2163 |
| BtsCI | GGATG | 8 cut(s) | 156, 736, 794, 858, 1057, 1376, 1581, 1756 |
| Cac8I | GCNNGC | 1 cut(s) | 14 |
| CfoI | GCGC | 1 cut(s) | 701 |
| Cfr10I | RCCGGY | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 7 cut(s) | 158, 414, 1037, 1303, 1450, 1759, 2161 |
| Cfr9I | CCCGGG | 1 cut(s) | 91 |
| Csp6I | GTAC | 9 cut(s) | 32, 295, 660, 1324, 1476, 1523, 1645, 1869, 2045 |
| CviAII | CATG | 5 cut(s) | 53, 439, 634, 691, 1969 |
| CviQI | GTAC | 9 cut(s) | 32, 295, 660, 1324, 1476, 1523, 1645, 1869, 2045 |
| DdeI | CTNAG | 9 cut(s) | 28, 746, 942, 1154, 1454, 1733, 1746, 1883, 1957 |
| DpnI | GATC | 8 cut(s) | 120, 252, 491, 1513, 1589, 1656, 1821, 1953 |
| DpnII | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| DraI | TTTAAA | 2 cut(s) | 928, 982 |
| DraIII | CACNNNGTG | 1 cut(s) | 885 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 2161 |
| EarI | CTCTTC | 2 cut(s) | 345, 2161 |
| Eco24I | GRGCYC | 2 cut(s) | 682, 2116 |
| Eco31I | GGTCTC | 1 cut(s) | 997 |
| Eco47I | GGWCC | 4 cut(s) | 158, 414, 1037, 1450 |
| Eco88I | CYCGRG | 2 cut(s) | 91, 1318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1037 |
| EcoRI | GAATTC | 1 cut(s) | 66 |
| EcoT22I | ATGCAT | 1 cut(s) | 1435 |
| EcoT38I | GRGCYC | 2 cut(s) | 682, 2116 |
| FaeI | CATG | 5 cut(s) | 56, 442, 637, 694, 1972 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 850, 882, 935, 967 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 5 cut(s) | 52, 438, 633, 690, 1968 |
| FauI | CCCGC | 1 cut(s) | 1023 |
| FauNDI | CATATG | 1 cut(s) | 1675 |
| FbaI | TGATCA | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 2 cut(s) | 324, 327 |
| FokI | GGATG | 8 cut(s) | 163, 743, 781, 865, 1064, 1383, 1588, 1763 |
| FriOI | GRGCYC | 2 cut(s) | 682, 2116 |
| Fsp4HI | GCNGC | 2 cut(s) | 324, 327 |
| FspBI | CTAG | 9 cut(s) | 99, 545, 606, 1352, 1479, 1526, 1767, 1782, 1872 |
| GlaI | GCGC | 1 cut(s) | 700 |
| GluI | GCNGC | 2 cut(s) | 324, 327 |
| HaeIII | GGCC | 5 cut(s) | 5, 1025, 1304, 1760, 2163 |
| HapII | CCGG | 5 cut(s) | 35, 92, 161, 800, 1043 |
| HhaI | GCGC | 1 cut(s) | 701 |
| Hin1II | CATG | 5 cut(s) | 56, 442, 637, 694, 1972 |
| Hin6I | GCGC | 1 cut(s) | 699 |
| HinP1I | GCGC | 1 cut(s) | 699 |
| HincII | GTYRAC | 2 cut(s) | 598, 2174 |
| HindII | GTYRAC | 2 cut(s) | 598, 2174 |
| HinfI | GANTC | 4 cut(s) | 286, 812, 962, 1285 |
| HpaII | CCGG | 5 cut(s) | 35, 92, 161, 800, 1043 |
| HphI | GGTGA | 7 cut(s) | 536, 1024, 1081, 1174, 1280, 1294, 1997 |
| Hpy166II | GTNNAC | 3 cut(s) | 598, 1869, 2174 |
| Hpy188I | TCNGA | 1 cut(s) | 123 |
| Hpy188III | TCNNGA | 7 cut(s) | 254, 266, 278, 545, 994, 1043, 1352 |
| Hpy8I | GTNNAC | 3 cut(s) | 598, 1869, 2174 |
| HpyAV | CCTTC | 4 cut(s) | 349, 1772, 2103, 2151 |
| HpyCH4III | ACNGT | 4 cut(s) | 595, 1162, 1777, 1852 |
| HpyCH4IV | ACGT | 2 cut(s) | 1139, 2059 |
| HpyCH4V | TGCA | 9 cut(s) | 12, 21, 611, 629, 688, 1124, 1174, 1222, 1433 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| HpyF3I | CTNAG | 9 cut(s) | 28, 746, 942, 1154, 1454, 1733, 1746, 1883, 1957 |
| HpySE526I | ACGT | 2 cut(s) | 1139, 2059 |
| Hsp92II | CATG | 5 cut(s) | 56, 442, 637, 694, 1972 |
| HspAI | GCGC | 1 cut(s) | 699 |
| Kpn2I | TCCGGA | 1 cut(s) | 1042 |
| Ksp22I | TGATCA | 1 cut(s) | 250 |
| Kzo9I | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| LmnI | GCTCC | 4 cut(s) | 742, 1504, 1912, 1945 |
| LpnPI | CCDG | 6 cut(s) | 48, 105, 174, 813, 1056, 1524 |
| LweI | GCATC | 3 cut(s) | 222, 751, 1093 |
| MaeI | CTAG | 9 cut(s) | 99, 545, 606, 1352, 1479, 1526, 1767, 1782, 1872 |
| MaeII | ACGT | 2 cut(s) | 1139, 2059 |
| MalI | GATC | 8 cut(s) | 120, 252, 491, 1513, 1589, 1656, 1821, 1953 |
| MbiI | CCGCTC | 1 cut(s) | 1604 |
| MboI | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| MboII | GAAGA | 7 cut(s) | 362, 549, 654, 1199, 1597, 2172, 2178 |
| MflI | RGATCY | 3 cut(s) | 118, 489, 1587 |
| MhlI | GDGCHC | 2 cut(s) | 682, 2116 |
| MlyI | GAGTC | 2 cut(s) | 821, 956 |
| MmeI | TCCRAC | 3 cut(s) | 789, 1160, 1320 |
| Mph1103I | ATGCAT | 1 cut(s) | 1435 |
| MroI | TCCGGA | 1 cut(s) | 1042 |
| MseI | TTAA | 9 cut(s) | 72, 648, 726, 909, 927, 981, 1148, 1404, 1838 |
| MslI | CAYNNNNRTG | 1 cut(s) | 522 |
| MspCI | CTTAAG | 2 cut(s) | 71, 647 |
| MspI | CCGG | 5 cut(s) | 35, 92, 161, 800, 1043 |
| MspR9I | CCNGG | 3 cut(s) | 92, 93, 800 |
| Mva1269I | GAATGC | 3 cut(s) | 14, 895, 1795 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 18, 1211 |
| NciI | CCSGG | 3 cut(s) | 92, 93, 800 |
| NdeI | CATATG | 1 cut(s) | 1675 |
| NdeII | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| NlaIII | CATG | 5 cut(s) | 56, 442, 637, 694, 1972 |
| NlaIV | GGNNCC | 5 cut(s) | 120, 491, 1038, 1914, 2162 |
| NmeAIII | GCCGAG | 1 cut(s) | 1341 |
| NmuCI | GTSAC | 9 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268, 1373 |
| NsiI | ATGCAT | 1 cut(s) | 1435 |
| PctI | GAATGC | 3 cut(s) | 14, 895, 1795 |
| PfeI | GAWTC | 2 cut(s) | 286, 1285 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 411 |
| PkrI | GCNGC | 2 cut(s) | 325, 328 |
| PleI | GAGTC | 2 cut(s) | 820, 956 |
| PpsI | GAGTC | 2 cut(s) | 820, 956 |
| PpuMI | RGGWCCY | 1 cut(s) | 1037 |
| PshAI | GACNNNNGTC | 1 cut(s) | 649 |
| PsiI | TTATAA | 1 cut(s) | 221 |
| Psp5II | RGGWCCY | 1 cut(s) | 1037 |
| PspN4I | GGNNCC | 5 cut(s) | 120, 491, 1038, 1914, 2162 |
| PspPI | GGNCC | 7 cut(s) | 158, 414, 1037, 1303, 1450, 1759, 2161 |
| PspPPI | RGGWCCY | 1 cut(s) | 1037 |
| PsuI | RGATCY | 3 cut(s) | 118, 489, 1587 |
| RsaI | GTAC | 9 cut(s) | 33, 296, 661, 1325, 1477, 1524, 1646, 1870, 2046 |
| RsaNI | GTAC | 9 cut(s) | 32, 295, 660, 1324, 1476, 1523, 1645, 1869, 2045 |
| RseI | CAYNNNNRTG | 1 cut(s) | 522 |
| SaqAI | TTAA | 9 cut(s) | 72, 648, 726, 909, 927, 981, 1148, 1404, 1838 |
| SatI | GCNGC | 2 cut(s) | 324, 327 |
| Sau3AI | GATC | 8 cut(s) | 118, 250, 489, 1511, 1587, 1654, 1819, 1951 |
| Sau96I | GGNCC | 7 cut(s) | 158, 414, 1037, 1303, 1450, 1759, 2161 |
| ScaI | AGTACT | 1 cut(s) | 1477 |
| SchI | GAGTC | 2 cut(s) | 821, 956 |
| ScrFI | CCNGG | 3 cut(s) | 92, 93, 800 |
| SduI | GDGCHC | 2 cut(s) | 682, 2116 |
| SfaNI | GCATC | 3 cut(s) | 222, 751, 1093 |
| SinI | GGWCC | 4 cut(s) | 158, 414, 1037, 1450 |
| SmaI | CCCGGG | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 522 |
| SmlI | CTYRAG | 4 cut(s) | 71, 647, 1247, 2040 |
| SmoI | CTYRAG | 4 cut(s) | 71, 647, 1247, 2040 |
| SpeI | ACTAGT | 2 cut(s) | 1478, 1871 |
| SsiI | CCGC | 7 cut(s) | 227, 323, 326, 329, 621, 1030, 1604 |
| SspI | AATATT | 2 cut(s) | 827, 1262 |
| SspMI | CTAG | 9 cut(s) | 99, 545, 606, 1352, 1479, 1526, 1767, 1782, 1872 |
| StyD4I | CCNGG | 3 cut(s) | 90, 91, 798 |
| TaaI | ACNGT | 4 cut(s) | 595, 1162, 1777, 1852 |
| TaiI | ACGT | 2 cut(s) | 1142, 2062 |
| TaqI | TCGA | 4 cut(s) | 265, 995, 1314, 2032 |
| TatI | WGTACW | 6 cut(s) | 294, 1475, 1522, 1644, 1868, 2044 |
| TauI | GCSGC | 2 cut(s) | 326, 329 |
| TfiI | GAWTC | 2 cut(s) | 286, 1285 |
| Tru1I | TTAA | 9 cut(s) | 72, 648, 726, 909, 927, 981, 1148, 1404, 1838 |
| Tru9I | TTAA | 9 cut(s) | 72, 648, 726, 909, 927, 981, 1148, 1404, 1838 |
| TseFI | GTSAC | 9 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268, 1373 |
| Tsp45I | GTSAC | 9 cut(s) | 166, 278, 704, 877, 959, 1012, 1140, 1268, 1373 |
| TspDTI | ATGAA | 7 cut(s) | 41, 650, 958, 1256, 1647, 2025, 2172 |
| TspGWI | ACGGA | 1 cut(s) | 755 |
| TspMI | CCCGGG | 1 cut(s) | 91 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 411 |
| Vha464I | CTTAAG | 2 cut(s) | 71, 647 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 414, 1037, 1450 |
| XapI | RAATTY | 5 cut(s) | 66, 1094, 1194, 1328, 1895 |
| XbaI | TCTAGA | 2 cut(s) | 544, 1351 |
| XmaI | CCCGGG | 1 cut(s) | 91 |
| XspI | CTAG | 9 cut(s) | 99, 545, 606, 1352, 1479, 1526, 1767, 1782, 1872 |
| ZrmI | AGTACT | 1 cut(s) | 1477 |
| Zsp2I | ATGCAT | 1 cut(s) | 1435 |