BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1054, 1460 |
| Acc65I | GGTACC | 1 cut(s) | 1680 |
| AccB1I | GGYRCC | 2 cut(s) | 1514, 1680 |
| AccBSI | CCGCTC | 1 cut(s) | 471 |
| AccII | CGCG | 1 cut(s) | 1029 |
| AciI | CCGC | 1 cut(s) | 469 |
| AclWI | GGATC | 5 cut(s) | 476, 489, 1151, 1164, 1299 |
| AcsI | RAATTY | 7 cut(s) | 110, 176, 224, 332, 528, 567, 756 |
| AcuI | CTGAAG | 2 cut(s) | 507, 851 |
| AfaI | GTAC | 4 cut(s) | 386, 459, 1669, 1682 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 127, 1518, 1536 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 3 cut(s) | 1352, 1517, 1535 |
| AleI | CACNNNNGTG | 1 cut(s) | 990 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1109, 1141 |
| AluBI | AGCT | 3 cut(s) | 835, 1082, 1677 |
| AluI | AGCT | 3 cut(s) | 835, 1082, 1677 |
| Alw26I | GTCTC | 3 cut(s) | 668, 971, 1347 |
| AlwI | GGATC | 5 cut(s) | 476, 489, 1151, 1164, 1299 |
| Ama87I | CYCGRG | 1 cut(s) | 516 |
| AoxI | GGCC | 3 cut(s) | 361, 1086, 1610 |
| ApeKI | GCWGC | 2 cut(s) | 1145, 1148 |
| ApoI | RAATTY | 7 cut(s) | 110, 176, 224, 332, 528, 567, 756 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 598, 630 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 756 |
| Asp718I | GGTACC | 1 cut(s) | 1680 |
| AspS9I | GGNCC | 1 cut(s) | 643 |
| AsuHPI | GGTGA | 5 cut(s) | 68, 119, 707, 1004, 1220 |
| AvaI | CYCGRG | 1 cut(s) | 516 |
| AvaII | GGWCC | 1 cut(s) | 643 |
| BamHI | GGATCC | 2 cut(s) | 481, 1156 |
| BanI | GGYRCC | 2 cut(s) | 1514, 1680 |
| BauI | CACGAG | 2 cut(s) | 1019, 1545 |
| BbsI | GAAGAC | 1 cut(s) | 762 |
| BbvCI | CCTCAGC | 1 cut(s) | 1083 |
| BbvI | GCAGC | 2 cut(s) | 1132, 1160 |
| BccI | CCATC | 4 cut(s) | 202, 229, 904, 1534 |
| BciT130I | CCWGG | 3 cut(s) | 1354, 1519, 1537 |
| BciVI | GTATCC | 1 cut(s) | 1533 |
| BclI | TGATCA | 1 cut(s) | 64 |
| BcoDI | GTCTC | 3 cut(s) | 668, 971, 1347 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 3 cut(s) | 371, 588, 1422 |
| BfmI | CTRYAG | 2 cut(s) | 818, 1146 |
| BfuI | GTATCC | 1 cut(s) | 1533 |
| BisI | GCNGC | 2 cut(s) | 1146, 1149 |
| BlsI | GCNGC | 2 cut(s) | 1147, 1150 |
| BmcAI | AGTACT | 1 cut(s) | 386 |
| Bme1390I | CCNGG | 3 cut(s) | 1354, 1519, 1537 |
| Bme18I | GGWCC | 1 cut(s) | 643 |
| BmeT110I | CYCGRG | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 1 cut(s) | 643 |
| BmiI | GGNNCC | 6 cut(s) | 198, 483, 1158, 1243, 1516, 1682 |
| BmrFI | CCNGG | 3 cut(s) | 1354, 1519, 1537 |
| BmsI | GCATC | 4 cut(s) | 1041, 1201, 1252, 1579 |
| BpiI | GAAGAC | 1 cut(s) | 762 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1083 |
| BpuEI | CTTGAG | 1 cut(s) | 358 |
| BsaAI | YACGTR | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 5 cut(s) | 631, 1160, 1352, 1469, 1607 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 127, 1518, 1536 |
| Bse118I | RCCGGY | 1 cut(s) | 1511 |
| Bse1I | ACTGG | 4 cut(s) | 121, 1396, 1460, 1613 |
| Bse3DI | GCAATG | 1 cut(s) | 138 |
| BseBI | CCWGG | 3 cut(s) | 1354, 1519, 1537 |
| BseDI | CCNNGG | 5 cut(s) | 631, 1160, 1352, 1469, 1607 |
| BseGI | GGATG | 2 cut(s) | 1123, 1545 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 127, 1518, 1536 |
| BseMI | GCAATG | 1 cut(s) | 138 |
| BseMII | CTCAG | 2 cut(s) | 152, 1074 |
| BseNI | ACTGG | 4 cut(s) | 121, 1396, 1460, 1613 |
| BseRI | GAGGAG | 1 cut(s) | 63 |
| BseXI | GCAGC | 2 cut(s) | 1132, 1160 |
| BsgI | GTGCAG | 1 cut(s) | 737 |
| Bsh1236I | CGCG | 1 cut(s) | 1029 |
| BshFI | GGCC | 3 cut(s) | 363, 1088, 1612 |
| BshNI | GGYRCC | 2 cut(s) | 1514, 1680 |
| BsiHKCI | CYCGRG | 1 cut(s) | 516 |
| BsiSI | CCGG | 2 cut(s) | 1512, 1643 |
| BslFI | GGGAC | 2 cut(s) | 92, 366 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 127, 1518, 1536 |
| BsmAI | GTCTC | 3 cut(s) | 668, 971, 1347 |
| BsmFI | GGGAC | 2 cut(s) | 92, 366 |
| BsmI | GAATGC | 3 cut(s) | 296, 1401, 1592 |
| BsnI | GGCC | 3 cut(s) | 363, 1088, 1612 |
| BsoBI | CYCGRG | 1 cut(s) | 516 |
| Bsp1407I | TGTACA | 1 cut(s) | 1667 |
| Bsp143I | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| Bsp68I | TCGCGA | 1 cut(s) | 1029 |
| BspACI | CCGC | 1 cut(s) | 469 |
| BspANI | GGCC | 3 cut(s) | 363, 1088, 1612 |
| BspCNI | CTCAG | 2 cut(s) | 153, 1075 |
| BspFNI | CGCG | 1 cut(s) | 1029 |
| BspLI | GGNNCC | 6 cut(s) | 198, 483, 1158, 1243, 1516, 1682 |
| BspMAI | CTGCAG | 1 cut(s) | 1150 |
| BspPI | GGATC | 5 cut(s) | 476, 489, 1151, 1164, 1299 |
| BspT107I | GGYRCC | 2 cut(s) | 1514, 1680 |
| BsrBI | CCGCTC | 1 cut(s) | 471 |
| BsrDI | GCAATG | 1 cut(s) | 138 |
| BsrFI | RCCGGY | 1 cut(s) | 1511 |
| BsrGI | TGTACA | 1 cut(s) | 1667 |
| BsrI | ACTGG | 4 cut(s) | 121, 1396, 1460, 1613 |
| BssAI | RCCGGY | 1 cut(s) | 1511 |
| BssECI | CCNNGG | 5 cut(s) | 631, 1160, 1352, 1469, 1607 |
| BssMI | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| BssSI | CACGAG | 2 cut(s) | 1019, 1545 |
| BssT1I | CCWWGG | 3 cut(s) | 631, 1469, 1607 |
| Bst2BI | CACGAG | 2 cut(s) | 1019, 1545 |
| Bst2UI | CCWGG | 3 cut(s) | 1354, 1519, 1537 |
| Bst4CI | ACNGT | 7 cut(s) | 86, 271, 398, 602, 659, 1257, 1685 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 470 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1145 |
| BstAUI | TGTACA | 1 cut(s) | 1667 |
| BstBAI | YACGTR | 1 cut(s) | 242 |
| BstDEI | CTNAG | 4 cut(s) | 161, 989, 1083, 1648 |
| BstF5I | GGATG | 2 cut(s) | 1123, 1545 |
| BstFNI | CGCG | 1 cut(s) | 1029 |
| BstKTI | GATC | 5 cut(s) | 67, 484, 817, 1159, 1294 |
| BstMAI | GTCTC | 3 cut(s) | 668, 971, 1347 |
| BstMBI | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1145 |
| BstNI | CCWGG | 3 cut(s) | 1354, 1519, 1537 |
| BstSCI | CCNGG | 3 cut(s) | 1352, 1517, 1535 |
| BstSFI | CTRYAG | 2 cut(s) | 818, 1146 |
| BstUI | CGCG | 1 cut(s) | 1029 |
| BstV1I | GCAGC | 2 cut(s) | 1132, 1160 |
| BstV2I | GAAGAC | 1 cut(s) | 762 |
| BstX2I | RGATCY | 2 cut(s) | 481, 1156 |
| BstYI | RGATCY | 2 cut(s) | 481, 1156 |
| BsuI | GTATCC | 1 cut(s) | 1533 |
| BsuRI | GGCC | 3 cut(s) | 363, 1088, 1612 |
| BtgZI | GCGATG | 2 cut(s) | 111, 882 |
| BtsCI | GGATG | 2 cut(s) | 1123, 1545 |
| BtsIMutI | CAGTG | 3 cut(s) | 607, 1403, 1688 |
| BtuMI | TCGCGA | 1 cut(s) | 1029 |
| Cfr10I | RCCGGY | 1 cut(s) | 1511 |
| Cfr13I | GGNCC | 1 cut(s) | 643 |
| Csp6I | GTAC | 4 cut(s) | 385, 458, 1668, 1681 |
| CviAII | CATG | 4 cut(s) | 680, 1090, 1497, 1627 |
| CviQI | GTAC | 4 cut(s) | 385, 458, 1668, 1681 |
| DdeI | CTNAG | 4 cut(s) | 161, 989, 1083, 1648 |
| DpnI | GATC | 5 cut(s) | 66, 483, 816, 1158, 1293 |
| DpnII | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1054, 1460 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1054, 1460 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 470 |
| EarI | CTCTTC | 2 cut(s) | 18, 470 |
| Eco130I | CCWWGG | 3 cut(s) | 631, 1469, 1607 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco47I | GGWCC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 2 cut(s) | 507, 851 |
| Eco88I | CYCGRG | 1 cut(s) | 516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 643 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoRII | CCWGG | 3 cut(s) | 1352, 1517, 1535 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 3 cut(s) | 631, 1469, 1607 |
| EcoT22I | ATGCAT | 2 cut(s) | 1267, 1594 |
| ErhI | CCWWGG | 3 cut(s) | 631, 1469, 1607 |
| FaeI | CATG | 4 cut(s) | 683, 1093, 1500, 1630 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1280, 1312, 1631, 1663 |
| FaqI | GGGAC | 2 cut(s) | 92, 366 |
| FatI | CATG | 4 cut(s) | 679, 1089, 1496, 1626 |
| FauNDI | CATATG | 1 cut(s) | 1585 |
| FbaI | TGATCA | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 2 cut(s) | 1146, 1149 |
| FokI | GGATG | 2 cut(s) | 1130, 1552 |
| Fsp4HI | GCNGC | 2 cut(s) | 1146, 1149 |
| FspBI | CTAG | 3 cut(s) | 371, 588, 1422 |
| GluI | GCNGC | 2 cut(s) | 1146, 1149 |
| HaeIII | GGCC | 3 cut(s) | 363, 1088, 1612 |
| HapII | CCGG | 2 cut(s) | 1512, 1643 |
| Hin1II | CATG | 4 cut(s) | 683, 1093, 1500, 1630 |
| HinfI | GANTC | 9 cut(s) | 26, 59, 799, 1307, 1322, 1328, 1340, 1363, 1474 |
| HpaII | CCGG | 2 cut(s) | 1512, 1643 |
| HphI | GGTGA | 5 cut(s) | 68, 119, 707, 1004, 1220 |
| Hpy166II | GTNNAC | 3 cut(s) | 1668, 1670, 1688 |
| Hpy8I | GTNNAC | 3 cut(s) | 1668, 1670, 1688 |
| Hpy99I | CGWCG | 1 cut(s) | 675 |
| HpyAV | CCTTC | 5 cut(s) | 127, 917, 1025, 1092, 1328 |
| HpyCH4III | ACNGT | 7 cut(s) | 86, 271, 398, 602, 659, 1257, 1685 |
| HpyCH4IV | ACGT | 1 cut(s) | 241 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1145 |
| HpyF3I | CTNAG | 4 cut(s) | 161, 989, 1083, 1648 |
| HpySE526I | ACGT | 1 cut(s) | 241 |
| Hsp92II | CATG | 4 cut(s) | 683, 1093, 1500, 1630 |
| KpnI | GGTACC | 1 cut(s) | 1684 |
| Ksp22I | TGATCA | 1 cut(s) | 64 |
| Kzo9I | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| LmnI | GCTCC | 2 cut(s) | 945, 1241 |
| Lsp1109I | GCAGC | 2 cut(s) | 1132, 1160 |
| LweI | GCATC | 4 cut(s) | 1041, 1201, 1252, 1579 |
| MaeI | CTAG | 3 cut(s) | 371, 588, 1422 |
| MaeII | ACGT | 1 cut(s) | 241 |
| MaeIII | GTNAC | 3 cut(s) | 89, 604, 868 |
| MalI | GATC | 5 cut(s) | 66, 483, 816, 1158, 1293 |
| MbiI | CCGCTC | 1 cut(s) | 471 |
| MboI | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| MfeI | CAATTG | 1 cut(s) | 1140 |
| MflI | RGATCY | 2 cut(s) | 481, 1156 |
| MlyI | GAGTC | 2 cut(s) | 1349, 1483 |
| MmeI | TCCRAC | 3 cut(s) | 105, 1083, 1419 |
| MnlI | CCTC | 9 cut(s) | 41, 121, 156, 301, 343, 374, 613, 1078, 1170 |
| Mph1103I | ATGCAT | 2 cut(s) | 1267, 1594 |
| MroXI | GAANNNNTTC | 1 cut(s) | 756 |
| MseI | TTAA | 6 cut(s) | 249, 261, 558, 738, 1167, 1203 |
| MslI | CAYNNNNRTG | 2 cut(s) | 990, 1495 |
| MspI | CCGG | 2 cut(s) | 1512, 1643 |
| MspR9I | CCNGG | 3 cut(s) | 1354, 1519, 1537 |
| MunI | CAATTG | 1 cut(s) | 1140 |
| Mva1269I | GAATGC | 3 cut(s) | 296, 1401, 1592 |
| MvaI | CCWGG | 3 cut(s) | 1354, 1519, 1537 |
| MvnI | CGCG | 1 cut(s) | 1029 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1145 |
| NdeI | CATATG | 1 cut(s) | 1585 |
| NdeII | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| NlaIII | CATG | 4 cut(s) | 683, 1093, 1500, 1630 |
| NlaIV | GGNNCC | 6 cut(s) | 198, 483, 1158, 1243, 1516, 1682 |
| NmuCI | GTSAC | 3 cut(s) | 89, 604, 868 |
| NruI | TCGCGA | 1 cut(s) | 1029 |
| NsiI | ATGCAT | 2 cut(s) | 1267, 1594 |
| OliI | CACNNNNGTG | 1 cut(s) | 990 |
| PaeR7I | CTCGAG | 1 cut(s) | 516 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1026 |
| PctI | GAATGC | 3 cut(s) | 296, 1401, 1592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 756 |
| PfeI | GAWTC | 7 cut(s) | 26, 59, 799, 1307, 1322, 1328, 1363 |
| PfoI | TCCNGGA | 1 cut(s) | 1535 |
| PkrI | GCNGC | 2 cut(s) | 1147, 1150 |
| PleI | GAGTC | 2 cut(s) | 1348, 1482 |
| PpsI | GAGTC | 2 cut(s) | 1348, 1482 |
| Ppu21I | YACGTR | 1 cut(s) | 242 |
| PpuMI | RGGWCCY | 1 cut(s) | 643 |
| Psp5II | RGGWCCY | 1 cut(s) | 643 |
| Psp6I | CCWGG | 3 cut(s) | 1352, 1517, 1535 |
| PspGI | CCWGG | 3 cut(s) | 1352, 1517, 1535 |
| PspN4I | GGNNCC | 6 cut(s) | 198, 483, 1158, 1243, 1516, 1682 |
| PspPI | GGNCC | 1 cut(s) | 643 |
| PspPPI | RGGWCCY | 1 cut(s) | 643 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1449, 1481 |
| PstI | CTGCAG | 1 cut(s) | 1150 |
| PsuI | RGATCY | 2 cut(s) | 481, 1156 |
| RruI | TCGCGA | 1 cut(s) | 1029 |
| RsaI | GTAC | 4 cut(s) | 386, 459, 1669, 1682 |
| RsaNI | GTAC | 4 cut(s) | 385, 458, 1668, 1681 |
| RseI | CAYNNNNRTG | 2 cut(s) | 990, 1495 |
| SaqAI | TTAA | 6 cut(s) | 249, 261, 558, 738, 1167, 1203 |
| SatI | GCNGC | 2 cut(s) | 1146, 1149 |
| Sau3AI | GATC | 5 cut(s) | 64, 481, 814, 1156, 1291 |
| Sau96I | GGNCC | 1 cut(s) | 643 |
| ScaI | AGTACT | 1 cut(s) | 386 |
| SchI | GAGTC | 2 cut(s) | 1349, 1483 |
| ScrFI | CCNGG | 3 cut(s) | 1354, 1519, 1537 |
| SfaNI | GCATC | 4 cut(s) | 1041, 1201, 1252, 1579 |
| SfcI | CTRYAG | 2 cut(s) | 818, 1146 |
| Sfr274I | CTCGAG | 1 cut(s) | 516 |
| SinI | GGWCC | 1 cut(s) | 643 |
| SlaI | CTCGAG | 1 cut(s) | 516 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 990, 1495 |
| SmlI | CTYRAG | 2 cut(s) | 337, 516 |
| SmoI | CTYRAG | 2 cut(s) | 337, 516 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| SsiI | CCGC | 1 cut(s) | 469 |
| SspI | AATATT | 1 cut(s) | 1000 |
| SspMI | CTAG | 3 cut(s) | 371, 588, 1422 |
| StyD4I | CCNGG | 3 cut(s) | 1352, 1517, 1535 |
| StyI | CCWWGG | 3 cut(s) | 631, 1469, 1607 |
| TaaI | ACNGT | 7 cut(s) | 86, 271, 398, 602, 659, 1257, 1685 |
| TaiI | ACGT | 1 cut(s) | 244 |
| TaqI | TCGA | 3 cut(s) | 517, 750, 760 |
| TatI | WGTACW | 2 cut(s) | 384, 1667 |
| TfiI | GAWTC | 7 cut(s) | 26, 59, 799, 1307, 1322, 1328, 1363 |
| Tru1I | TTAA | 6 cut(s) | 249, 261, 558, 738, 1167, 1203 |
| Tru9I | TTAA | 6 cut(s) | 249, 261, 558, 738, 1167, 1203 |
| TscAI | CASTG | 3 cut(s) | 607, 1403, 1695 |
| TseFI | GTSAC | 3 cut(s) | 89, 604, 868 |
| TseI | GCWGC | 2 cut(s) | 1145, 1148 |
| Tsp45I | GTSAC | 3 cut(s) | 89, 604, 868 |
| TspRI | CASTG | 3 cut(s) | 607, 1403, 1695 |
| VpaK11BI | GGWCC | 1 cut(s) | 643 |
| XapI | RAATTY | 7 cut(s) | 110, 176, 224, 332, 528, 567, 756 |
| XbaI | TCTAGA | 1 cut(s) | 370 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1467 |
| XhoI | CTCGAG | 1 cut(s) | 516 |
| XmnI | GAANNNNTTC | 1 cut(s) | 756 |
| XspI | CTAG | 3 cut(s) | 371, 588, 1422 |
| ZrmI | AGTACT | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 2 cut(s) | 1267, 1594 |