BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1573 |
| Acc65I | GGTACC | 1 cut(s) | 2199 |
| AccB1I | GGYRCC | 2 cut(s) | 2033, 2199 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AccBSI | CCGCTC | 1 cut(s) | 993 |
| AccII | CGCG | 1 cut(s) | 2067 |
| AciI | CCGC | 4 cut(s) | 383, 396, 991, 2152 |
| AclWI | GGATC | 7 cut(s) | 232, 998, 1011, 1670, 1683, 1786, 2143 |
| AcsI | RAATTY | 7 cut(s) | 130, 402, 632, 698, 854, 865, 1703 |
| AcuI | CTGAAG | 2 cut(s) | 1029, 1373 |
| AcvI | CACGTG | 2 cut(s) | 347, 1204 |
| AfaI | GTAC | 5 cut(s) | 373, 908, 981, 2188, 2201 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 206, 892, 2055, 2127 |
| AflIII | ACRYGT | 1 cut(s) | 368 |
| AgeI | ACCGGT | 1 cut(s) | 2030 |
| AhlI | ACTAGT | 1 cut(s) | 1109 |
| AjnI | CCWGG | 4 cut(s) | 190, 291, 1871, 2054 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1628, 1660, 2133, 2165 |
| AluBI | AGCT | 8 cut(s) | 361, 365, 409, 488, 1357, 1601, 1751, 2196 |
| AluI | AGCT | 8 cut(s) | 361, 365, 409, 488, 1357, 1601, 1751, 2196 |
| Alw21I | GWGCWC | 1 cut(s) | 2209 |
| Alw26I | GTCTC | 6 cut(s) | 52, 215, 292, 1490, 1805, 1866 |
| Alw44I | GTGCAC | 1 cut(s) | 2205 |
| AlwI | GGATC | 7 cut(s) | 232, 998, 1011, 1670, 1683, 1786, 2143 |
| Ama87I | CYCGRG | 1 cut(s) | 498 |
| AoxI | GGCC | 2 cut(s) | 1605, 2129 |
| ApaLI | GTGCAC | 1 cut(s) | 2205 |
| ApeKI | GCWGC | 1 cut(s) | 1667 |
| ApoI | RAATTY | 7 cut(s) | 130, 402, 632, 698, 854, 865, 1703 |
| AsiGI | ACCGGT | 1 cut(s) | 2030 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 134 |
| Asp718I | GGTACC | 1 cut(s) | 2199 |
| AspA2I | CCTAGG | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 7 cut(s) | 180, 590, 641, 874, 1229, 1523, 1739 |
| AsuNHI | GCTAGC | 1 cut(s) | 361 |
| AvaI | CYCGRG | 1 cut(s) | 498 |
| AvrII | CCTAGG | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 2209 |
| BamHI | GGATCC | 2 cut(s) | 1003, 1675 |
| BanI | GGYRCC | 2 cut(s) | 2033, 2199 |
| BbrPI | CACGTG | 2 cut(s) | 347, 1204 |
| BbsI | GAAGAC | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 2209 |
| BbvCI | CCTCAGC | 1 cut(s) | 1602 |
| BbvI | GCAGC | 1 cut(s) | 1679 |
| BccI | CCATC | 5 cut(s) | 4, 724, 1423, 1574, 2053 |
| BceAI | ACGGC | 1 cut(s) | 390 |
| BciT130I | CCWGG | 4 cut(s) | 192, 293, 1873, 2056 |
| BciVI | GTATCC | 1 cut(s) | 2052 |
| BclI | TGATCA | 2 cut(s) | 349, 586 |
| BcoDI | GTCTC | 6 cut(s) | 52, 215, 292, 1490, 1805, 1866 |
| BcuI | ACTAGT | 1 cut(s) | 1109 |
| BfaI | CTAG | 4 cut(s) | 362, 378, 477, 1110 |
| BfmI | CTRYAG | 2 cut(s) | 1340, 1665 |
| BfuI | GTATCC | 1 cut(s) | 2052 |
| BisI | GCNGC | 1 cut(s) | 1668 |
| BlnI | CCTAGG | 1 cut(s) | 476 |
| BlsI | GCNGC | 1 cut(s) | 1669 |
| BmcAI | AGTACT | 1 cut(s) | 908 |
| Bme1390I | CCNGG | 4 cut(s) | 192, 293, 1873, 2056 |
| BmeT110I | CYCGRG | 1 cut(s) | 498 |
| BmiI | GGNNCC | 6 cut(s) | 720, 1005, 1677, 1762, 2035, 2201 |
| BmrFI | CCNGG | 4 cut(s) | 192, 293, 1873, 2056 |
| BmrI | ACTGGG | 1 cut(s) | 605 |
| BmsI | GCATC | 5 cut(s) | 730, 1560, 1720, 1771, 2098 |
| BmtI | GCTAGC | 1 cut(s) | 365 |
| BmuI | ACTGGG | 1 cut(s) | 605 |
| BpiI | GAAGAC | 1 cut(s) | 177 |
| BpmI | CTGGAG | 2 cut(s) | 914, 2038 |
| Bpu10I | CCTNAGC | 2 cut(s) | 122, 1602 |
| BsaAI | YACGTR | 4 cut(s) | 347, 369, 764, 1204 |
| BsaI | GGTCTC | 2 cut(s) | 215, 1805 |
| BsaJI | CCNNGG | 8 cut(s) | 116, 292, 476, 1153, 1679, 1871, 1988, 2126 |
| BsaWI | WCCGGW | 1 cut(s) | 2030 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 206, 892, 2055, 2127 |
| Bse118I | RCCGGY | 1 cut(s) | 2030 |
| Bse1I | ACTGG | 6 cut(s) | 600, 643, 965, 1677, 1915, 2132 |
| Bse3DI | GCAATG | 2 cut(s) | 660, 1167 |
| BseBI | CCWGG | 4 cut(s) | 192, 293, 1873, 2056 |
| BseDI | CCNNGG | 8 cut(s) | 116, 292, 476, 1153, 1679, 1871, 1988, 2126 |
| BseGI | GGATG | 5 cut(s) | 81, 288, 1585, 1642, 2064 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 206, 892, 2055, 2127 |
| BseMI | GCAATG | 2 cut(s) | 660, 1167 |
| BseMII | CTCAG | 2 cut(s) | 498, 1593 |
| BseNI | ACTGG | 6 cut(s) | 600, 643, 965, 1677, 1915, 2132 |
| BseRI | GAGGAG | 2 cut(s) | 408, 585 |
| BseSI | GKGCMC | 1 cut(s) | 2209 |
| BseXI | GCAGC | 1 cut(s) | 1679 |
| BsgI | GTGCAG | 1 cut(s) | 1259 |
| Bsh1236I | CGCG | 1 cut(s) | 2067 |
| BshFI | GGCC | 2 cut(s) | 1607, 2131 |
| BshNI | GGYRCC | 2 cut(s) | 2033, 2199 |
| BshTI | ACCGGT | 1 cut(s) | 2030 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 498 |
| BsiSI | CCGG | 2 cut(s) | 2031, 2162 |
| BslFI | GGGAC | 2 cut(s) | 614, 888 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 206, 892, 2055, 2127 |
| BsmAI | GTCTC | 6 cut(s) | 52, 215, 292, 1490, 1805, 1866 |
| BsmFI | GGGAC | 2 cut(s) | 614, 888 |
| BsmI | GAATGC | 4 cut(s) | 60, 818, 1920, 2111 |
| BsnI | GGCC | 2 cut(s) | 1607, 2131 |
| Bso31I | GGTCTC | 2 cut(s) | 215, 1805 |
| BsoBI | CYCGRG | 1 cut(s) | 498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2209 |
| Bsp1407I | TGTACA | 1 cut(s) | 2186 |
| Bsp143I | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| BspACI | CCGC | 4 cut(s) | 383, 396, 991, 2152 |
| BspANI | GGCC | 2 cut(s) | 1607, 2131 |
| BspCNI | CTCAG | 2 cut(s) | 497, 1594 |
| BspFNI | CGCG | 1 cut(s) | 2067 |
| BspHI | TCATGA | 1 cut(s) | 1537 |
| BspLI | GGNNCC | 6 cut(s) | 720, 1005, 1677, 1762, 2035, 2201 |
| BspMAI | CTGCAG | 1 cut(s) | 1669 |
| BspOI | GCTAGC | 1 cut(s) | 365 |
| BspPI | GGATC | 7 cut(s) | 232, 998, 1011, 1670, 1683, 1786, 2143 |
| BspT107I | GGYRCC | 2 cut(s) | 2033, 2199 |
| BspTNI | GGTCTC | 2 cut(s) | 215, 1805 |
| BsrBI | CCGCTC | 1 cut(s) | 993 |
| BsrDI | GCAATG | 2 cut(s) | 660, 1167 |
| BsrFI | RCCGGY | 1 cut(s) | 2030 |
| BsrGI | TGTACA | 1 cut(s) | 2186 |
| BsrI | ACTGG | 6 cut(s) | 600, 643, 965, 1677, 1915, 2132 |
| BssAI | RCCGGY | 1 cut(s) | 2030 |
| BssECI | CCNNGG | 8 cut(s) | 116, 292, 476, 1153, 1679, 1871, 1988, 2126 |
| BssMI | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| BssT1I | CCWWGG | 5 cut(s) | 116, 476, 1153, 1988, 2126 |
| Bst2UI | CCWGG | 4 cut(s) | 192, 293, 1873, 2056 |
| Bst4CI | ACNGT | 4 cut(s) | 40, 920, 1776, 2204 |
| Bst6I | CTCTTC | 1 cut(s) | 540 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1664 |
| BstAUI | TGTACA | 1 cut(s) | 2186 |
| BstBAI | YACGTR | 4 cut(s) | 347, 369, 764, 1204 |
| BstC8I | GCNNGC | 4 cut(s) | 197, 363, 1347, 2065 |
| BstDEI | CTNAG | 5 cut(s) | 122, 484, 726, 1602, 2167 |
| BstF5I | GGATG | 5 cut(s) | 81, 288, 1585, 1642, 2064 |
| BstFNI | CGCG | 1 cut(s) | 2067 |
| BstKTI | GATC | 8 cut(s) | 227, 352, 589, 1006, 1339, 1678, 1794, 2151 |
| BstMAI | GTCTC | 6 cut(s) | 52, 215, 292, 1490, 1805, 1866 |
| BstMBI | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1405, 1664 |
| BstNI | CCWGG | 4 cut(s) | 192, 293, 1873, 2056 |
| BstNSI | RCATGY | 1 cut(s) | 199 |
| BstSCI | CCNGG | 4 cut(s) | 190, 291, 1871, 2054 |
| BstSFI | CTRYAG | 2 cut(s) | 1340, 1665 |
| BstSLI | GKGCMC | 1 cut(s) | 2209 |
| BstUI | CGCG | 1 cut(s) | 2067 |
| BstV1I | GCAGC | 1 cut(s) | 1679 |
| BstV2I | GAAGAC | 1 cut(s) | 177 |
| BstX2I | RGATCY | 2 cut(s) | 1003, 1675 |
| BstYI | RGATCY | 2 cut(s) | 1003, 1675 |
| BsuI | GTATCC | 1 cut(s) | 2052 |
| BsuRI | GGCC | 2 cut(s) | 1607, 2131 |
| BtgZI | GCGATG | 1 cut(s) | 633 |
| BtsCI | GGATG | 5 cut(s) | 81, 288, 1585, 1642, 2064 |
| BtsI | GCAGTG | 2 cut(s) | 1129, 1509 |
| BtsIMutI | CAGTG | 5 cut(s) | 1129, 1509, 1670, 1922, 2207 |
| Cac8I | GCNNGC | 4 cut(s) | 197, 363, 1347, 2065 |
| CciI | TCATGA | 1 cut(s) | 1537 |
| Cfr10I | RCCGGY | 1 cut(s) | 2030 |
| CseI | GACGC | 1 cut(s) | 781 |
| Csp6I | GTAC | 5 cut(s) | 372, 907, 980, 2187, 2200 |
| CspAI | ACCGGT | 1 cut(s) | 2030 |
| CviAII | CATG | 7 cut(s) | 7, 75, 196, 1410, 1538, 1609, 2146 |
| CviQI | GTAC | 5 cut(s) | 372, 907, 980, 2187, 2200 |
| DdeI | CTNAG | 5 cut(s) | 122, 484, 726, 1602, 2167 |
| DpnI | GATC | 8 cut(s) | 226, 351, 588, 1005, 1338, 1677, 1793, 2150 |
| DpnII | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1573 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1573 |
| Eam1104I | CTCTTC | 1 cut(s) | 540 |
| EarI | CTCTTC | 1 cut(s) | 540 |
| Eco130I | CCWWGG | 5 cut(s) | 116, 476, 1153, 1988, 2126 |
| Eco31I | GGTCTC | 2 cut(s) | 215, 1805 |
| Eco32I | GATATC | 1 cut(s) | 1267 |
| Eco57I | CTGAAG | 2 cut(s) | 1029, 1373 |
| Eco72I | CACGTG | 2 cut(s) | 347, 1204 |
| Eco88I | CYCGRG | 1 cut(s) | 498 |
| EcoRI | GAATTC | 1 cut(s) | 854 |
| EcoRII | CCWGG | 4 cut(s) | 190, 291, 1871, 2054 |
| EcoRV | GATATC | 1 cut(s) | 1267 |
| EcoT14I | CCWWGG | 5 cut(s) | 116, 476, 1153, 1988, 2126 |
| EcoT22I | ATGCAT | 3 cut(s) | 1786, 2113, 2179 |
| ErhI | CCWWGG | 5 cut(s) | 116, 476, 1153, 1988, 2126 |
| FaeI | CATG | 7 cut(s) | 10, 78, 199, 1413, 1541, 1612, 2149 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 48, 80, 642, 674, 1799, 1831, 2150, 2182 |
| FaqI | GGGAC | 2 cut(s) | 614, 888 |
| FatI | CATG | 7 cut(s) | 6, 74, 195, 1409, 1537, 1608, 2145 |
| FauI | CCCGC | 1 cut(s) | 403 |
| FauNDI | CATATG | 2 cut(s) | 1786, 2104 |
| FbaI | TGATCA | 2 cut(s) | 349, 586 |
| Fnu4HI | GCNGC | 1 cut(s) | 1668 |
| FokI | GGATG | 5 cut(s) | 68, 275, 1592, 1649, 2071 |
| Fsp4HI | GCNGC | 1 cut(s) | 1668 |
| FspBI | CTAG | 4 cut(s) | 362, 378, 477, 1110 |
| GluI | GCNGC | 1 cut(s) | 1668 |
| GsuI | CTGGAG | 2 cut(s) | 914, 2038 |
| HaeIII | GGCC | 2 cut(s) | 1607, 2131 |
| HapII | CCGG | 2 cut(s) | 2031, 2162 |
| HgaI | GACGC | 1 cut(s) | 781 |
| Hin1II | CATG | 7 cut(s) | 10, 78, 199, 1413, 1541, 1612, 2149 |
| HinfI | GANTC | 9 cut(s) | 437, 505, 548, 1321, 1826, 1841, 1847, 1859, 1993 |
| HpaII | CCGG | 2 cut(s) | 2031, 2162 |
| HphI | GGTGA | 7 cut(s) | 180, 590, 641, 874, 1229, 1523, 1739 |
| Hpy166II | GTNNAC | 6 cut(s) | 170, 275, 372, 2187, 2189, 2207 |
| Hpy8I | GTNNAC | 6 cut(s) | 170, 275, 372, 2187, 2189, 2207 |
| Hpy99I | CGWCG | 2 cut(s) | 271, 1197 |
| HpyAV | CCTTC | 8 cut(s) | 95, 117, 307, 649, 947, 1436, 1544, 1847 |
| HpyCH4III | ACNGT | 4 cut(s) | 40, 920, 1776, 2204 |
| HpyCH4IV | ACGT | 4 cut(s) | 346, 368, 763, 1203 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1405, 1664 |
| HpyF3I | CTNAG | 5 cut(s) | 122, 484, 726, 1602, 2167 |
| HpySE526I | ACGT | 4 cut(s) | 346, 368, 763, 1203 |
| Hsp92II | CATG | 7 cut(s) | 10, 78, 199, 1413, 1541, 1612, 2149 |
| KpnI | GGTACC | 1 cut(s) | 2203 |
| Ksp22I | TGATCA | 2 cut(s) | 349, 586 |
| Kzo9I | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| LmnI | GCTCC | 2 cut(s) | 414, 1760 |
| Lsp1109I | GCAGC | 1 cut(s) | 1679 |
| LweI | GCATC | 5 cut(s) | 730, 1560, 1720, 1771, 2098 |
| MaeI | CTAG | 4 cut(s) | 362, 378, 477, 1110 |
| MaeII | ACGT | 4 cut(s) | 346, 368, 763, 1203 |
| MaeIII | GTNAC | 2 cut(s) | 51, 611 |
| MalI | GATC | 8 cut(s) | 226, 351, 588, 1005, 1338, 1677, 1793, 2150 |
| MbiI | CCGCTC | 1 cut(s) | 993 |
| MboI | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MflI | RGATCY | 2 cut(s) | 1003, 1675 |
| MhlI | GDGCHC | 1 cut(s) | 2209 |
| MlyI | GAGTC | 3 cut(s) | 499, 1868, 2002 |
| MmeI | TCCRAC | 2 cut(s) | 1557, 1938 |
| Mph1103I | ATGCAT | 3 cut(s) | 1786, 2113, 2179 |
| MroXI | GAANNNNTTC | 1 cut(s) | 134 |
| MseI | TTAA | 8 cut(s) | 236, 771, 783, 849, 1080, 1260, 1686, 1722 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1536, 2182 |
| MspI | CCGG | 2 cut(s) | 2031, 2162 |
| MspR9I | CCNGG | 4 cut(s) | 192, 293, 1873, 2056 |
| MunI | CAATTG | 1 cut(s) | 465 |
| Mva1269I | GAATGC | 4 cut(s) | 60, 818, 1920, 2111 |
| MvaI | CCWGG | 4 cut(s) | 192, 293, 1873, 2056 |
| MvnI | CGCG | 1 cut(s) | 2067 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1405, 1664 |
| NdeI | CATATG | 2 cut(s) | 1786, 2104 |
| NdeII | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| NheI | GCTAGC | 1 cut(s) | 361 |
| NlaIII | CATG | 7 cut(s) | 10, 78, 199, 1413, 1541, 1612, 2149 |
| NlaIV | GGNNCC | 6 cut(s) | 720, 1005, 1677, 1762, 2035, 2201 |
| NmuCI | GTSAC | 2 cut(s) | 51, 611 |
| NsiI | ATGCAT | 3 cut(s) | 1786, 2113, 2179 |
| NspI | RCATGY | 1 cut(s) | 199 |
| PaeI | GCATGC | 1 cut(s) | 199 |
| PagI | TCATGA | 1 cut(s) | 1537 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 228 |
| PctI | GAATGC | 4 cut(s) | 60, 818, 1920, 2111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 134 |
| PfeI | GAWTC | 6 cut(s) | 437, 548, 1321, 1826, 1841, 1847 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PfoI | TCCNGGA | 1 cut(s) | 2054 |
| PinAI | ACCGGT | 1 cut(s) | 2030 |
| PkrI | GCNGC | 1 cut(s) | 1669 |
| PleI | GAGTC | 3 cut(s) | 499, 1867, 2001 |
| PmaCI | CACGTG | 2 cut(s) | 347, 1204 |
| PmlI | CACGTG | 2 cut(s) | 347, 1204 |
| PpsI | GAGTC | 3 cut(s) | 499, 1867, 2001 |
| Ppu21I | YACGTR | 4 cut(s) | 347, 369, 764, 1204 |
| Psp6I | CCWGG | 4 cut(s) | 190, 291, 1871, 2054 |
| PspCI | CACGTG | 2 cut(s) | 347, 1204 |
| PspGI | CCWGG | 4 cut(s) | 190, 291, 1871, 2054 |
| PspN4I | GGNNCC | 6 cut(s) | 720, 1005, 1677, 1762, 2035, 2201 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1968, 2000 |
| PstI | CTGCAG | 1 cut(s) | 1669 |
| PsuI | RGATCY | 2 cut(s) | 1003, 1675 |
| RsaI | GTAC | 5 cut(s) | 373, 908, 981, 2188, 2201 |
| RsaNI | GTAC | 5 cut(s) | 372, 907, 980, 2187, 2200 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1536, 2182 |
| SaqAI | TTAA | 8 cut(s) | 236, 771, 783, 849, 1080, 1260, 1686, 1722 |
| SatI | GCNGC | 1 cut(s) | 1668 |
| Sau3AI | GATC | 8 cut(s) | 224, 349, 586, 1003, 1336, 1675, 1791, 2148 |
| ScaI | AGTACT | 1 cut(s) | 908 |
| SchI | GAGTC | 3 cut(s) | 499, 1868, 2002 |
| ScrFI | CCNGG | 4 cut(s) | 192, 293, 1873, 2056 |
| SduI | GDGCHC | 1 cut(s) | 2209 |
| SfaNI | GCATC | 5 cut(s) | 730, 1560, 1720, 1771, 2098 |
| SfcI | CTRYAG | 2 cut(s) | 1340, 1665 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2030 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1536, 2182 |
| SpeI | ACTAGT | 1 cut(s) | 1109 |
| SphI | GCATGC | 1 cut(s) | 199 |
| SsiI | CCGC | 4 cut(s) | 383, 396, 991, 2152 |
| SspI | AATATT | 1 cut(s) | 1631 |
| SspMI | CTAG | 4 cut(s) | 362, 378, 477, 1110 |
| StyD4I | CCNGG | 4 cut(s) | 190, 291, 1871, 2054 |
| StyI | CCWWGG | 5 cut(s) | 116, 476, 1153, 1988, 2126 |
| TaaI | ACNGT | 4 cut(s) | 40, 920, 1776, 2204 |
| TaiI | ACGT | 4 cut(s) | 349, 371, 766, 1206 |
| TaqI | TCGA | 6 cut(s) | 266, 435, 1039, 1272, 1282, 1928 |
| TatI | WGTACW | 2 cut(s) | 906, 2186 |
| TfiI | GAWTC | 6 cut(s) | 437, 548, 1321, 1826, 1841, 1847 |
| Tru1I | TTAA | 8 cut(s) | 236, 771, 783, 849, 1080, 1260, 1686, 1722 |
| Tru9I | TTAA | 8 cut(s) | 236, 771, 783, 849, 1080, 1260, 1686, 1722 |
| TscAI | CASTG | 5 cut(s) | 1129, 1516, 1677, 1922, 2214 |
| TseFI | GTSAC | 2 cut(s) | 51, 611 |
| TseI | GCWGC | 1 cut(s) | 1667 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 611 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| TspRI | CASTG | 5 cut(s) | 1129, 1516, 1677, 1922, 2214 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VneI | GTGCAC | 1 cut(s) | 2205 |
| XapI | RAATTY | 7 cut(s) | 130, 402, 632, 698, 854, 865, 1703 |
| XceI | RCATGY | 1 cut(s) | 199 |
| XmaJI | CCTAGG | 1 cut(s) | 476 |
| XmnI | GAANNNNTTC | 1 cut(s) | 134 |
| XspI | CTAG | 4 cut(s) | 362, 378, 477, 1110 |
| ZrmI | AGTACT | 1 cut(s) | 908 |
| Zsp2I | ATGCAT | 3 cut(s) | 1786, 2113, 2179 |