BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1783, 2459 |
| Acc36I | ACCTGC | 1 cut(s) | 977 |
| Acc65I | GGTACC | 1 cut(s) | 989 |
| AccB1I | GGYRCC | 2 cut(s) | 989, 2761 |
| AccBSI | CCGCTC | 1 cut(s) | 53 |
| AccI | GTMKAC | 2 cut(s) | 422, 2463 |
| AccII | CGCG | 1 cut(s) | 1371 |
| AciI | CCGC | 5 cut(s) | 51, 862, 1468, 1646, 2213 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 1615, 2091, 2316, 2546 |
| AdeI | CACNNNGTG | 1 cut(s) | 1594 |
| AfaI | GTAC | 7 cut(s) | 544, 970, 991, 1693, 2180, 2588, 2690 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 885, 1219, 1384, 1969, 2203, 2403 |
| AflII | CTTAAG | 1 cut(s) | 1811 |
| AflIII | ACRYGT | 2 cut(s) | 1369, 1389 |
| AjnI | CCWGG | 6 cut(s) | 916, 1047, 1231, 1363, 2103, 2196 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2216, 2248 |
| Alw21I | GWGCWC | 2 cut(s) | 2328, 2505 |
| Alw26I | GTCTC | 4 cut(s) | 407, 1985, 2468, 2705 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1150, 1511 |
| AoxI | GGCC | 2 cut(s) | 3, 1622 |
| ApeKI | GCWGC | 2 cut(s) | 1604, 1898 |
| ApoI | RAATTY | 4 cut(s) | 1615, 2091, 2316, 2546 |
| AseI | ATTAAT | 1 cut(s) | 96 |
| Asp718I | GGTACC | 1 cut(s) | 989 |
| AspA2I | CCTAGG | 1 cut(s) | 2228 |
| AspS9I | GGNCC | 2 cut(s) | 763, 1395 |
| AsuC2I | CCSGG | 1 cut(s) | 1754 |
| AsuHPI | GGTGA | 9 cut(s) | 661, 685, 709, 889, 1131, 1291, 1570, 1580, 2288 |
| AvaII | GGWCC | 2 cut(s) | 763, 1395 |
| AvrII | CCTAGG | 1 cut(s) | 2228 |
| BaeGI | GKGCMC | 1 cut(s) | 1437 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 3 cut(s) | 1942, 2128, 2224 |
| BanI | GGYRCC | 2 cut(s) | 989, 2761 |
| BanII | GRGCYC | 2 cut(s) | 2328, 2505 |
| BauI | CACGAG | 2 cut(s) | 2109, 2610 |
| BbsI | GAAGAC | 1 cut(s) | 1781 |
| Bbv12I | GWGCWC | 2 cut(s) | 2328, 2505 |
| BbvI | GCAGC | 2 cut(s) | 1616, 1885 |
| BccI | CCATC | 8 cut(s) | 556, 634, 1480, 1583, 1643, 2306, 2599, 2674 |
| BceAI | ACGGC | 2 cut(s) | 1133, 1155 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 194, 228, 228, 262, 1292, 1326, 2651, 2685 |
| BciT130I | CCWGG | 6 cut(s) | 918, 1049, 1233, 1365, 2105, 2198 |
| BciVI | GTATCC | 2 cut(s) | 1506, 1927 |
| BclI | TGATCA | 2 cut(s) | 690, 1585 |
| BcnI | CCSGG | 1 cut(s) | 1754 |
| BcoDI | GTCTC | 4 cut(s) | 407, 1985, 2468, 2705 |
| BfaI | CTAG | 5 cut(s) | 2229, 2403, 2481, 2535, 2558 |
| BfmI | CTRYAG | 4 cut(s) | 270, 294, 2061, 2637 |
| BfrI | CTTAAG | 1 cut(s) | 1811 |
| BfuAI | ACCTGC | 1 cut(s) | 977 |
| BfuI | GTATCC | 2 cut(s) | 1506, 1927 |
| BisI | GCNGC | 3 cut(s) | 1469, 1605, 1899 |
| BlnI | CCTAGG | 1 cut(s) | 2228 |
| BlpI | GCTNAGC | 1 cut(s) | 1517 |
| BlsI | GCNGC | 3 cut(s) | 1470, 1606, 1900 |
| BmcAI | AGTACT | 3 cut(s) | 544, 970, 2180 |
| Bme1390I | CCNGG | 7 cut(s) | 918, 1049, 1233, 1365, 1754, 2105, 2198 |
| Bme18I | GGWCC | 2 cut(s) | 763, 1395 |
| BmgT120I | GGNCC | 2 cut(s) | 763, 1395 |
| BmrFI | CCNGG | 7 cut(s) | 918, 1049, 1233, 1365, 1754, 2105, 2198 |
| BmrI | ACTGGG | 3 cut(s) | 1138, 1440, 1586 |
| BmsI | GCATC | 6 cut(s) | 576, 600, 1435, 2014, 2036, 2736 |
| BmuI | ACTGGG | 3 cut(s) | 1138, 1440, 1586 |
| BoxI | GACNNNNGTC | 1 cut(s) | 341 |
| BpiI | GAAGAC | 1 cut(s) | 1781 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1834, 1866 |
| BpmI | CTGGAG | 6 cut(s) | 63, 387, 459, 507, 1244, 1570 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1017, 2736 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1517 |
| BpuEI | CTTGAG | 1 cut(s) | 1631 |
| BpuMI | CCSGG | 1 cut(s) | 1754 |
| BsaAI | YACGTR | 2 cut(s) | 1691, 1881 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1193 |
| BsaJI | CCNNGG | 5 cut(s) | 1232, 1297, 1383, 2228, 2419 |
| BsaWI | WCCGGW | 1 cut(s) | 2629 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 919, 949, 1550, 1580 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 885, 1219, 1384, 1969, 2203, 2403 |
| Bse3DI | GCAATG | 2 cut(s) | 808, 1011 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1193 |
| BseBI | CCWGG | 6 cut(s) | 918, 1049, 1233, 1365, 2105, 2198 |
| BseDI | CCNNGG | 5 cut(s) | 1232, 1297, 1383, 2228, 2419 |
| BseGI | GGATG | 7 cut(s) | 391, 850, 926, 1228, 2027, 2034, 2751 |
| BseJI | GATNNNNATC | 1 cut(s) | 1193 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 885, 1219, 1384, 1969, 2203, 2403 |
| BseMI | GCAATG | 2 cut(s) | 808, 1011 |
| BseMII | CTCAG | 4 cut(s) | 819, 1518, 1896, 2115 |
| BseRI | GAGGAG | 1 cut(s) | 1390 |
| BseSI | GKGCMC | 1 cut(s) | 1437 |
| BseXI | GCAGC | 2 cut(s) | 1616, 1885 |
| BseYI | CCCAGC | 2 cut(s) | 1030, 1078 |
| BsgI | GTGCAG | 1 cut(s) | 1984 |
| Bsh1236I | CGCG | 1 cut(s) | 1371 |
| BshFI | GGCC | 2 cut(s) | 5, 1624 |
| BshNI | GGYRCC | 2 cut(s) | 989, 2761 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2328, 2505 |
| BsiSI | CCGG | 2 cut(s) | 1753, 2630 |
| BslFI | GGGAC | 5 cut(s) | 749, 847, 1036, 1771, 1814 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 885, 1219, 1384, 1969, 2203, 2403 |
| BsmAI | GTCTC | 4 cut(s) | 407, 1985, 2468, 2705 |
| BsmBI | CGTCTC | 1 cut(s) | 2705 |
| BsmFI | GGGAC | 5 cut(s) | 749, 847, 1036, 1771, 1814 |
| BsnI | GGCC | 2 cut(s) | 5, 1624 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1437, 2328, 2505 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1517 |
| BspACI | CCGC | 5 cut(s) | 51, 862, 1468, 1646, 2213 |
| BspANI | GGCC | 2 cut(s) | 5, 1624 |
| BspCNI | CTCAG | 4 cut(s) | 820, 1517, 1897, 2116 |
| BspFNI | CGCG | 1 cut(s) | 1371 |
| BspHI | TCATGA | 5 cut(s) | 571, 1174, 1543, 2320, 2332 |
| BspMAI | CTGCAG | 1 cut(s) | 2065 |
| BspMI | ACCTGC | 1 cut(s) | 977 |
| BspQI | GCTCTTC | 9 cut(s) | 57, 105, 201, 225, 249, 273, 297, 321, 453 |
| BspT107I | GGYRCC | 2 cut(s) | 989, 2761 |
| BspTI | CTTAAG | 1 cut(s) | 1811 |
| BsrBI | CCGCTC | 1 cut(s) | 53 |
| BsrDI | GCAATG | 2 cut(s) | 808, 1011 |
| BssECI | CCNNGG | 5 cut(s) | 1232, 1297, 1383, 2228, 2419 |
| BssSI | CACGAG | 2 cut(s) | 2109, 2610 |
| BssT1I | CCWWGG | 4 cut(s) | 1297, 1383, 2228, 2419 |
| Bst2BI | CACGAG | 2 cut(s) | 2109, 2610 |
| Bst2UI | CCWGG | 6 cut(s) | 918, 1049, 1233, 1365, 2105, 2198 |
| BstAFI | CTTAAG | 1 cut(s) | 1811 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 945 |
| BstBAI | YACGTR | 2 cut(s) | 1691, 1881 |
| BstC8I | GCNNGC | 7 cut(s) | 213, 237, 261, 285, 309, 799, 941 |
| BstDEI | CTNAG | 7 cut(s) | 828, 1017, 1504, 1517, 1905, 2124, 2736 |
| BstF5I | GGATG | 7 cut(s) | 391, 850, 926, 1228, 2027, 2034, 2751 |
| BstFNI | CGCG | 1 cut(s) | 1371 |
| BstMAI | GTCTC | 4 cut(s) | 407, 1985, 2468, 2705 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 945, 1468 |
| BstNI | CCWGG | 6 cut(s) | 918, 1049, 1233, 1365, 2105, 2198 |
| BstNSI | RCATGY | 2 cut(s) | 936, 1393 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 341 |
| BstSCI | CCNGG | 7 cut(s) | 916, 1047, 1231, 1363, 1752, 2103, 2196 |
| BstSFI | CTRYAG | 4 cut(s) | 270, 294, 2061, 2637 |
| BstSLI | GKGCMC | 1 cut(s) | 1437 |
| BstSNI | TACGTA | 1 cut(s) | 1881 |
| BstUI | CGCG | 1 cut(s) | 1371 |
| BstV1I | GCAGC | 2 cut(s) | 1616, 1885 |
| BstV2I | GAAGAC | 1 cut(s) | 1781 |
| BstX2I | RGATCY | 5 cut(s) | 160, 184, 1942, 2128, 2224 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2680 |
| BstYI | RGATCY | 5 cut(s) | 160, 184, 1942, 2128, 2224 |
| BsuI | GTATCC | 2 cut(s) | 1506, 1927 |
| BsuRI | GGCC | 2 cut(s) | 5, 1624 |
| BtsCI | GGATG | 7 cut(s) | 391, 850, 926, 1228, 2027, 2034, 2751 |
| BtsI | GCAGTG | 4 cut(s) | 950, 1102, 2345, 2667 |
| BveI | ACCTGC | 1 cut(s) | 977 |
| Cac8I | GCNNGC | 7 cut(s) | 213, 237, 261, 285, 309, 799, 941 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1150, 1511 |
| CciI | TCATGA | 5 cut(s) | 571, 1174, 1543, 2320, 2332 |
| Cfr13I | GGNCC | 2 cut(s) | 763, 1395 |
| CseI | GACGC | 1 cut(s) | 1377 |
| Csp6I | GTAC | 7 cut(s) | 543, 969, 990, 1692, 2179, 2587, 2689 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 30, 2196, 2231 |
| CviQI | GTAC | 7 cut(s) | 543, 969, 990, 1692, 2179, 2587, 2689 |
| DdeI | CTNAG | 7 cut(s) | 828, 1017, 1504, 1517, 1905, 2124, 2736 |
| DraIII | CACNNNGTG | 1 cut(s) | 1594 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1783, 2459 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1783, 2459 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 2 cut(s) | 2326, 2503 |
| Eco105I | TACGTA | 1 cut(s) | 1881 |
| Eco130I | CCWWGG | 4 cut(s) | 1297, 1383, 2228, 2419 |
| Eco147I | AGGCCT | 1 cut(s) | 1624 |
| Eco24I | GRGCYC | 2 cut(s) | 2328, 2505 |
| Eco47I | GGWCC | 2 cut(s) | 763, 1395 |
| Eco53kI | GAGCTC | 2 cut(s) | 2326, 2503 |
| EcoICRI | GAGCTC | 2 cut(s) | 2326, 2503 |
| EcoO109I | RGGNCCY | 1 cut(s) | 763 |
| EcoRI | GAATTC | 2 cut(s) | 2091, 2316 |
| EcoRII | CCWGG | 6 cut(s) | 916, 1047, 1231, 1363, 2103, 2196 |
| EcoT14I | CCWWGG | 4 cut(s) | 1297, 1383, 2228, 2419 |
| EcoT22I | ATGCAT | 1 cut(s) | 2029 |
| EcoT38I | GRGCYC | 2 cut(s) | 2328, 2505 |
| ErhI | CCWWGG | 4 cut(s) | 1297, 1383, 2228, 2419 |
| Esp3I | CGTCTC | 1 cut(s) | 2705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1593, 1625 |
| FaqI | GGGAC | 5 cut(s) | 749, 847, 1036, 1771, 1814 |
| FauI | CCCGC | 1 cut(s) | 1653 |
| FauNDI | CATATG | 1 cut(s) | 1218 |
| FbaI | TGATCA | 2 cut(s) | 690, 1585 |
| FblI | GTMKAC | 2 cut(s) | 422, 2463 |
| Fnu4HI | GCNGC | 3 cut(s) | 1469, 1605, 1899 |
| FokI | GGATG | 7 cut(s) | 398, 837, 933, 1215, 2014, 2021, 2758 |
| FriOI | GRGCYC | 2 cut(s) | 2328, 2505 |
| Fsp4HI | GCNGC | 3 cut(s) | 1469, 1605, 1899 |
| FspBI | CTAG | 5 cut(s) | 2229, 2403, 2481, 2535, 2558 |
| GluI | GCNGC | 3 cut(s) | 1469, 1605, 1899 |
| GsaI | CCCAGC | 2 cut(s) | 1034, 1082 |
| GsuI | CTGGAG | 6 cut(s) | 63, 387, 459, 507, 1244, 1570 |
| HaeIII | GGCC | 2 cut(s) | 5, 1624 |
| HapII | CCGG | 2 cut(s) | 1753, 2630 |
| HgaI | GACGC | 1 cut(s) | 1377 |
| HincII | GTYRAC | 1 cut(s) | 27 |
| HindII | GTYRAC | 1 cut(s) | 27 |
| HindIII | AAGCTT | 1 cut(s) | 2243 |
| HpaII | CCGG | 2 cut(s) | 1753, 2630 |
| HphI | GGTGA | 9 cut(s) | 661, 685, 709, 889, 1131, 1291, 1570, 1580, 2288 |
| Hpy166II | GTNNAC | 6 cut(s) | 27, 423, 529, 1395, 2464, 2542 |
| Hpy188I | TCNGA | 8 cut(s) | 1507, 1783, 1906, 1942, 2101, 2500, 2650, 2786 |
| Hpy8I | GTNNAC | 6 cut(s) | 27, 423, 529, 1395, 2464, 2542 |
| HpyAV | CCTTC | 3 cut(s) | 1550, 2080, 2375 |
| HpyCH4IV | ACGT | 2 cut(s) | 1690, 1880 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 945, 1468 |
| HpyF3I | CTNAG | 7 cut(s) | 828, 1017, 1504, 1517, 1905, 2124, 2736 |
| HpySE526I | ACGT | 2 cut(s) | 1690, 1880 |
| KpnI | GGTACC | 1 cut(s) | 993 |
| Ksp22I | TGATCA | 2 cut(s) | 690, 1585 |
| LguI | GCTCTTC | 9 cut(s) | 57, 105, 201, 225, 249, 273, 297, 321, 453 |
| LmnI | GCTCC | 7 cut(s) | 58, 889, 1476, 1807, 1842, 2290, 2500 |
| Lsp1109I | GCAGC | 2 cut(s) | 1616, 1885 |
| LweI | GCATC | 6 cut(s) | 576, 600, 1435, 2014, 2036, 2736 |
| MaeI | CTAG | 5 cut(s) | 2229, 2403, 2481, 2535, 2558 |
| MaeII | ACGT | 2 cut(s) | 1690, 1880 |
| MbiI | CCGCTC | 1 cut(s) | 53 |
| MfeI | CAATTG | 1 cut(s) | 429 |
| MflI | RGATCY | 5 cut(s) | 160, 184, 1942, 2128, 2224 |
| MhlI | GDGCHC | 3 cut(s) | 1437, 2328, 2505 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluI | ACGCGT | 1 cut(s) | 1369 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 7 cut(s) | 922, 1496, 1793, 1987, 2439, 2547, 2587 |
| MmeI | TCCRAC | 3 cut(s) | 2055, 2312, 2478 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 2029 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 8 cut(s) | 96, 480, 1272, 1341, 1476, 1619, 1812, 1910 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 2213 |
| MspCI | CTTAAG | 1 cut(s) | 1811 |
| MspI | CCGG | 2 cut(s) | 1753, 2630 |
| MspR9I | CCNGG | 7 cut(s) | 918, 1049, 1233, 1365, 1754, 2105, 2198 |
| MunI | CAATTG | 1 cut(s) | 429 |
| MvaI | CCWGG | 6 cut(s) | 918, 1049, 1233, 1365, 2105, 2198 |
| MvnI | CGCG | 1 cut(s) | 1371 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 945, 1468 |
| NciI | CCSGG | 1 cut(s) | 1754 |
| NdeI | CATATG | 1 cut(s) | 1218 |
| NmuCI | GTSAC | 9 cut(s) | 118, 142, 166, 190, 334, 355, 514, 739, 2612 |
| NsiI | ATGCAT | 1 cut(s) | 2029 |
| NspI | RCATGY | 2 cut(s) | 936, 1393 |
| PagI | TCATGA | 5 cut(s) | 571, 1174, 1543, 2320, 2332 |
| PceI | AGGCCT | 1 cut(s) | 1624 |
| PciI | ACATGT | 1 cut(s) | 1389 |
| PciSI | GCTCTTC | 9 cut(s) | 57, 105, 201, 225, 249, 273, 297, 321, 453 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1123 |
| PfeI | GAWTC | 5 cut(s) | 1057, 1255, 1508, 2414, 2651 |
| PflFI | GACNNNGTC | 1 cut(s) | 418 |
| PfoI | TCCNGGA | 2 cut(s) | 916, 1752 |
| PkrI | GCNGC | 3 cut(s) | 1470, 1606, 1900 |
| PleI | GAGTC | 7 cut(s) | 921, 1496, 1792, 1987, 2439, 2546, 2587 |
| PpsI | GAGTC | 7 cut(s) | 921, 1496, 1792, 1987, 2439, 2546, 2587 |
| Ppu21I | YACGTR | 2 cut(s) | 1691, 1881 |
| PpuMI | RGGWCCY | 1 cut(s) | 763 |
| PscI | ACATGT | 1 cut(s) | 1389 |
| PshAI | GACNNNNGTC | 1 cut(s) | 341 |
| PshBI | ATTAAT | 1 cut(s) | 96 |
| Psp124BI | GAGCTC | 2 cut(s) | 2328, 2505 |
| Psp5II | RGGWCCY | 1 cut(s) | 763 |
| Psp6I | CCWGG | 6 cut(s) | 916, 1047, 1231, 1363, 2103, 2196 |
| PspFI | CCCAGC | 2 cut(s) | 1030, 1078 |
| PspGI | CCWGG | 6 cut(s) | 916, 1047, 1231, 1363, 2103, 2196 |
| PspPI | GGNCC | 2 cut(s) | 763, 1395 |
| PspPPI | RGGWCCY | 1 cut(s) | 763 |
| PstI | CTGCAG | 1 cut(s) | 2065 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1150, 1511 |
| PsuI | RGATCY | 5 cut(s) | 160, 184, 1942, 2128, 2224 |
| PsyI | GACNNNGTC | 1 cut(s) | 418 |
| RsaI | GTAC | 7 cut(s) | 544, 970, 991, 1693, 2180, 2588, 2690 |
| RsaNI | GTAC | 7 cut(s) | 543, 969, 990, 1692, 2179, 2587, 2689 |
| SacI | GAGCTC | 2 cut(s) | 2328, 2505 |
| SapI | GCTCTTC | 9 cut(s) | 57, 105, 201, 225, 249, 273, 297, 321, 453 |
| SaqAI | TTAA | 8 cut(s) | 96, 480, 1272, 1341, 1476, 1619, 1812, 1910 |
| SatI | GCNGC | 3 cut(s) | 1469, 1605, 1899 |
| Sau96I | GGNCC | 2 cut(s) | 763, 1395 |
| ScaI | AGTACT | 3 cut(s) | 544, 970, 2180 |
| SchI | GAGTC | 7 cut(s) | 922, 1496, 1793, 1987, 2439, 2547, 2587 |
| ScrFI | CCNGG | 7 cut(s) | 918, 1049, 1233, 1365, 1754, 2105, 2198 |
| SduI | GDGCHC | 3 cut(s) | 1437, 2328, 2505 |
| SfaNI | GCATC | 6 cut(s) | 576, 600, 1435, 2014, 2036, 2736 |
| SfcI | CTRYAG | 4 cut(s) | 270, 294, 2061, 2637 |
| SinI | GGWCC | 2 cut(s) | 763, 1395 |
| SmlI | CTYRAG | 2 cut(s) | 1610, 1811 |
| SmoI | CTYRAG | 2 cut(s) | 1610, 1811 |
| SnaBI | TACGTA | 1 cut(s) | 1881 |
| SseBI | AGGCCT | 1 cut(s) | 1624 |
| SsiI | CCGC | 5 cut(s) | 51, 862, 1468, 1646, 2213 |
| SspI | AATATT | 3 cut(s) | 1705, 2339, 2431 |
| SspMI | CTAG | 5 cut(s) | 2229, 2403, 2481, 2535, 2558 |
| SstI | GAGCTC | 2 cut(s) | 2328, 2505 |
| StuI | AGGCCT | 1 cut(s) | 1624 |
| StyD4I | CCNGG | 7 cut(s) | 916, 1047, 1231, 1363, 1752, 2103, 2196 |
| StyI | CCWWGG | 4 cut(s) | 1297, 1383, 2228, 2419 |
| TaiI | ACGT | 2 cut(s) | 1693, 1883 |
| TaqI | TCGA | 4 cut(s) | 204, 345, 2505, 2661 |
| TatI | WGTACW | 4 cut(s) | 542, 968, 2178, 2688 |
| TauI | GCSGC | 1 cut(s) | 1471 |
| TfiI | GAWTC | 5 cut(s) | 1057, 1255, 1508, 2414, 2651 |
| Tru1I | TTAA | 8 cut(s) | 96, 480, 1272, 1341, 1476, 1619, 1812, 1910 |
| Tru9I | TTAA | 8 cut(s) | 96, 480, 1272, 1341, 1476, 1619, 1812, 1910 |
| TseFI | GTSAC | 9 cut(s) | 118, 142, 166, 190, 334, 355, 514, 739, 2612 |
| TseI | GCWGC | 2 cut(s) | 1604, 1898 |
| Tsp45I | GTSAC | 9 cut(s) | 118, 142, 166, 190, 334, 355, 514, 739, 2612 |
| TspGWI | ACGGA | 2 cut(s) | 868, 2457 |
| Tth111I | GACNNNGTC | 1 cut(s) | 418 |
| Vha464I | CTTAAG | 1 cut(s) | 1811 |
| VpaK11BI | GGWCC | 2 cut(s) | 763, 1395 |
| VspI | ATTAAT | 1 cut(s) | 96 |
| XapI | RAATTY | 4 cut(s) | 1615, 2091, 2316, 2546 |
| XceI | RCATGY | 2 cut(s) | 936, 1393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2785 |
| XmaJI | CCTAGG | 1 cut(s) | 2228 |
| XmiI | GTMKAC | 2 cut(s) | 422, 2463 |
| XspI | CTAG | 5 cut(s) | 2229, 2403, 2481, 2535, 2558 |
| ZrmI | AGTACT | 3 cut(s) | 544, 970, 2180 |
| Zsp2I | ATGCAT | 1 cut(s) | 2029 |