BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 192 |
| Acc16I | TGCGCA | 1 cut(s) | 1042 |
| Acc65I | GGTACC | 1 cut(s) | 10 |
| AccB1I | GGYRCC | 2 cut(s) | 10, 1376 |
| AccI | GTMKAC | 2 cut(s) | 407, 837 |
| AclWI | GGATC | 3 cut(s) | 68, 1046, 1059 |
| AcsI | RAATTY | 8 cut(s) | 110, 119, 176, 218, 230, 718, 927, 1079 |
| AcuI | CTGAAG | 2 cut(s) | 753, 1251 |
| AcvI | CACGTG | 1 cut(s) | 1409 |
| AdeI | CACNNNGTG | 1 cut(s) | 1175 |
| AfaI | GTAC | 4 cut(s) | 12, 789, 1198, 1462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 287 |
| AflIII | ACRYGT | 1 cut(s) | 1249 |
| AgsI | TTSAA | 6 cut(s) | 160, 551, 818, 872, 991, 1303 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AleI | CACNNNNGTG | 2 cut(s) | 372, 623 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1004, 1036 |
| Alw21I | GWGCWC | 2 cut(s) | 1370, 1534 |
| Alw26I | GTCTC | 1 cut(s) | 1548 |
| AlwI | GGATC | 3 cut(s) | 68, 1046, 1059 |
| Ama87I | CYCGRG | 1 cut(s) | 140 |
| AoxI | GGCC | 3 cut(s) | 400, 1140, 1472 |
| ApaI | GGGCCC | 1 cut(s) | 404 |
| ApeKI | GCWGC | 4 cut(s) | 1043, 1124, 1127, 1513 |
| ApoI | RAATTY | 8 cut(s) | 110, 119, 176, 218, 230, 718, 927, 1079 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1139, 1171 |
| AseI | ATTAAT | 1 cut(s) | 498 |
| Asp718I | GGTACC | 1 cut(s) | 10 |
| AspA2I | CCTAGG | 1 cut(s) | 1547 |
| AspLEI | GCGC | 1 cut(s) | 1043 |
| AspS9I | GGNCC | 4 cut(s) | 400, 401, 1140, 1466 |
| AsuHPI | GGTGA | 1 cut(s) | 899 |
| AvaI | CYCGRG | 1 cut(s) | 140 |
| AvaII | GGWCC | 1 cut(s) | 1466 |
| AvrII | CCTAGG | 1 cut(s) | 1547 |
| AxyI | CCTNAGG | 1 cut(s) | 798 |
| BaeGI | GKGCMC | 2 cut(s) | 55, 404 |
| BamHI | GGATCC | 1 cut(s) | 1051 |
| BanI | GGYRCC | 2 cut(s) | 10, 1376 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| BauI | CACGAG | 1 cut(s) | 372 |
| BbrPI | CACGTG | 1 cut(s) | 1409 |
| Bbv12I | GWGCWC | 2 cut(s) | 1370, 1534 |
| BbvI | GCAGC | 4 cut(s) | 1055, 1111, 1139, 1500 |
| BccI | CCATC | 4 cut(s) | 22, 230, 732, 1103 |
| BceAI | ACGGC | 1 cut(s) | 304 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BciVI | GTATCC | 1 cut(s) | 1395 |
| BclI | TGATCA | 2 cut(s) | 517, 577 |
| BcoDI | GTCTC | 1 cut(s) | 1548 |
| BfaI | CTAG | 3 cut(s) | 6, 282, 1548 |
| BfmI | CTRYAG | 2 cut(s) | 1125, 1371 |
| BfuI | GTATCC | 1 cut(s) | 1395 |
| BisI | GCNGC | 4 cut(s) | 1044, 1125, 1128, 1514 |
| BlnI | CCTAGG | 1 cut(s) | 1547 |
| BlpI | GCTNAGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 4 cut(s) | 1045, 1126, 1129, 1515 |
| BmcAI | AGTACT | 1 cut(s) | 1462 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| Bme18I | GGWCC | 1 cut(s) | 1466 |
| BmeT110I | CYCGRG | 1 cut(s) | 140 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 4 cut(s) | 400, 401, 1140, 1466 |
| BmiI | GGNNCC | 5 cut(s) | 12, 402, 1053, 1141, 1378 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmsI | GCATC | 2 cut(s) | 889, 950 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1528 |
| BpmI | CTGGAG | 1 cut(s) | 761 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 2 cut(s) | 407, 473 |
| BsaAI | YACGTR | 1 cut(s) | 1409 |
| BsaI | GGTCTC | 1 cut(s) | 1548 |
| BsaJI | CCNNGG | 4 cut(s) | 1055, 1331, 1469, 1547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 734, 764 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 287 |
| Bse1I | ACTGG | 3 cut(s) | 1007, 1427, 1468 |
| Bse21I | CCTNAGG | 1 cut(s) | 798 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseDI | CCNNGG | 4 cut(s) | 1055, 1331, 1469, 1547 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BseMII | CTCAG | 2 cut(s) | 18, 789 |
| BseNI | ACTGG | 3 cut(s) | 1007, 1427, 1468 |
| BseRI | GAGGAG | 2 cut(s) | 404, 470 |
| BseSI | GKGCMC | 2 cut(s) | 55, 404 |
| BseXI | GCAGC | 4 cut(s) | 1055, 1111, 1139, 1500 |
| BsgI | GTGCAG | 1 cut(s) | 647 |
| BshFI | GGCC | 3 cut(s) | 402, 1142, 1474 |
| BshNI | GGYRCC | 2 cut(s) | 10, 1376 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1370, 1534 |
| BsiHKCI | CYCGRG | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 287 |
| BsmAI | GTCTC | 1 cut(s) | 1548 |
| BsmI | GAATGC | 1 cut(s) | 1454 |
| BsnI | GGCC | 3 cut(s) | 402, 1142, 1474 |
| Bso31I | GGTCTC | 1 cut(s) | 1548 |
| BsoBI | CYCGRG | 1 cut(s) | 140 |
| Bsp120I | GGGCCC | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 4 cut(s) | 55, 404, 1370, 1534 |
| Bsp1407I | TGTACA | 1 cut(s) | 1196 |
| Bsp143I | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 27 |
| BspANI | GGCC | 3 cut(s) | 402, 1142, 1474 |
| BspCNI | CTCAG | 2 cut(s) | 19, 790 |
| BspHI | TCATGA | 1 cut(s) | 922 |
| BspLI | GGNNCC | 5 cut(s) | 12, 402, 1053, 1141, 1378 |
| BspMAI | CTGCAG | 2 cut(s) | 1129, 1375 |
| BspPI | GGATC | 3 cut(s) | 68, 1046, 1059 |
| BspT107I | GGYRCC | 2 cut(s) | 10, 1376 |
| BspTNI | GGTCTC | 1 cut(s) | 1548 |
| BsrGI | TGTACA | 1 cut(s) | 1196 |
| BsrI | ACTGG | 3 cut(s) | 1007, 1427, 1468 |
| BssECI | CCNNGG | 4 cut(s) | 1055, 1331, 1469, 1547 |
| BssMI | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| BssSI | CACGAG | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 3 cut(s) | 1331, 1469, 1547 |
| Bst2BI | CACGAG | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 3 cut(s) | 412, 973, 1196 |
| Bst6I | CTCTTC | 1 cut(s) | 772 |
| BstAUI | TGTACA | 1 cut(s) | 1196 |
| BstBAI | YACGTR | 1 cut(s) | 1409 |
| BstC8I | GCNNGC | 5 cut(s) | 33, 1375, 1437, 1476, 1518 |
| BstDEI | CTNAG | 3 cut(s) | 27, 572, 798 |
| BstHHI | GCGC | 1 cut(s) | 1043 |
| BstKTI | GATC | 4 cut(s) | 76, 520, 580, 1054 |
| BstMAI | GTCTC | 1 cut(s) | 1548 |
| BstMBI | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 1374, 1510 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstNSI | RCATGY | 2 cut(s) | 1253, 1520 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 2 cut(s) | 1125, 1371 |
| BstSLI | GKGCMC | 2 cut(s) | 55, 404 |
| BstV1I | GCAGC | 4 cut(s) | 1055, 1111, 1139, 1500 |
| BstX2I | RGATCY | 1 cut(s) | 1051 |
| BstYI | RGATCY | 1 cut(s) | 1051 |
| Bsu36I | CCTNAGG | 1 cut(s) | 798 |
| BsuI | GTATCC | 1 cut(s) | 1395 |
| BsuRI | GGCC | 3 cut(s) | 402, 1142, 1474 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsI | GCAGTG | 1 cut(s) | 1368 |
| BtsIMutI | CAGTG | 2 cut(s) | 777, 1368 |
| Cac8I | GCNNGC | 5 cut(s) | 33, 1375, 1437, 1476, 1518 |
| CciI | TCATGA | 1 cut(s) | 922 |
| CfoI | GCGC | 1 cut(s) | 1043 |
| Cfr13I | GGNCC | 4 cut(s) | 400, 401, 1140, 1466 |
| Csp6I | GTAC | 4 cut(s) | 11, 788, 1197, 1461 |
| CviAII | CATG | 6 cut(s) | 272, 914, 923, 1250, 1498, 1517 |
| CviQI | GTAC | 4 cut(s) | 11, 788, 1197, 1461 |
| DdeI | CTNAG | 3 cut(s) | 27, 572, 798 |
| DpnI | GATC | 4 cut(s) | 75, 519, 579, 1053 |
| DpnII | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| DraIII | CACNNNGTG | 1 cut(s) | 1175 |
| Eam1104I | CTCTTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 1 cut(s) | 772 |
| Eco130I | CCWWGG | 3 cut(s) | 1331, 1469, 1547 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco31I | GGTCTC | 1 cut(s) | 1548 |
| Eco32I | GATATC | 1 cut(s) | 480 |
| Eco47I | GGWCC | 1 cut(s) | 1466 |
| Eco57I | CTGAAG | 2 cut(s) | 753, 1251 |
| Eco72I | CACGTG | 1 cut(s) | 1409 |
| Eco81I | CCTNAGG | 1 cut(s) | 798 |
| Eco88I | CYCGRG | 1 cut(s) | 140 |
| EcoRI | GAATTC | 2 cut(s) | 176, 218 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoRV | GATATC | 1 cut(s) | 480 |
| EcoT14I | CCWWGG | 3 cut(s) | 1331, 1469, 1547 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| ErhI | CCWWGG | 3 cut(s) | 1331, 1469, 1547 |
| FaeI | CATG | 6 cut(s) | 275, 917, 926, 1253, 1501, 1520 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 6 cut(s) | 271, 913, 922, 1249, 1497, 1516 |
| FbaI | TGATCA | 2 cut(s) | 517, 577 |
| FblI | GTMKAC | 2 cut(s) | 407, 837 |
| Fnu4HI | GCNGC | 4 cut(s) | 1044, 1125, 1128, 1514 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 4 cut(s) | 1044, 1125, 1128, 1514 |
| FspBI | CTAG | 3 cut(s) | 6, 282, 1548 |
| FspI | TGCGCA | 1 cut(s) | 1042 |
| GlaI | GCGC | 1 cut(s) | 1042 |
| GluI | GCNGC | 4 cut(s) | 1044, 1125, 1128, 1514 |
| GsuI | CTGGAG | 1 cut(s) | 761 |
| HaeIII | GGCC | 3 cut(s) | 402, 1142, 1474 |
| HhaI | GCGC | 1 cut(s) | 1043 |
| Hin1II | CATG | 6 cut(s) | 275, 917, 926, 1253, 1501, 1520 |
| Hin6I | GCGC | 1 cut(s) | 1041 |
| HinP1I | GCGC | 1 cut(s) | 1041 |
| HincII | GTYRAC | 3 cut(s) | 136, 775, 949 |
| HindII | GTYRAC | 3 cut(s) | 136, 775, 949 |
| HindIII | AAGCTT | 1 cut(s) | 993 |
| HinfI | GANTC | 7 cut(s) | 128, 541, 564, 950, 1205, 1226, 1255 |
| HpaI | GTTAAC | 1 cut(s) | 136 |
| HphI | GGTGA | 1 cut(s) | 899 |
| Hpy166II | GTNNAC | 8 cut(s) | 136, 408, 775, 838, 949, 1192, 1293, 1495 |
| Hpy188I | TCNGA | 6 cut(s) | 933, 955, 1183, 1225, 1231, 1536 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 551, 740, 923, 1049, 1313 |
| Hpy8I | GTNNAC | 8 cut(s) | 136, 408, 775, 838, 949, 1192, 1293, 1495 |
| Hpy99I | CGWCG | 1 cut(s) | 1079 |
| HpyAV | CCTTC | 3 cut(s) | 553, 812, 1226 |
| HpyCH4III | ACNGT | 3 cut(s) | 412, 973, 1196 |
| HpyCH4IV | ACGT | 3 cut(s) | 103, 1074, 1408 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 1374, 1510 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 572, 798 |
| HpySE526I | ACGT | 3 cut(s) | 103, 1074, 1408 |
| Hsp92II | CATG | 6 cut(s) | 275, 917, 926, 1253, 1501, 1520 |
| HspAI | GCGC | 1 cut(s) | 1041 |
| KpnI | GGTACC | 1 cut(s) | 14 |
| Ksp22I | TGATCA | 2 cut(s) | 517, 577 |
| KspAI | GTTAAC | 1 cut(s) | 136 |
| Kzo9I | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| LmnI | GCTCC | 2 cut(s) | 1365, 1536 |
| Lsp1109I | GCAGC | 4 cut(s) | 1055, 1111, 1139, 1500 |
| LweI | GCATC | 2 cut(s) | 889, 950 |
| MaeI | CTAG | 3 cut(s) | 6, 282, 1548 |
| MaeII | ACGT | 3 cut(s) | 103, 1074, 1408 |
| MaeIII | GTNAC | 3 cut(s) | 284, 712, 1272 |
| MalI | GATC | 4 cut(s) | 75, 519, 579, 1053 |
| MboI | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| MboII | GAAGA | 7 cut(s) | 484, 487, 550, 759, 820, 1080, 1328 |
| MfeI | CAATTG | 2 cut(s) | 521, 1298 |
| MflI | RGATCY | 1 cut(s) | 1051 |
| MhlI | GDGCHC | 4 cut(s) | 55, 404, 1370, 1534 |
| MlyI | GAGTC | 3 cut(s) | 137, 573, 944 |
| MmeI | TCCRAC | 1 cut(s) | 592 |
| MslI | CAYNNNNRTG | 3 cut(s) | 372, 623, 912 |
| MspA1I | CMGCKG | 2 cut(s) | 1130, 1478 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| MunI | CAATTG | 2 cut(s) | 521, 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 1454 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 1374, 1510 |
| NdeII | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| NlaIII | CATG | 6 cut(s) | 275, 917, 926, 1253, 1501, 1520 |
| NlaIV | GGNNCC | 5 cut(s) | 12, 402, 1053, 1141, 1378 |
| NmuCI | GTSAC | 1 cut(s) | 712 |
| NsbI | TGCGCA | 1 cut(s) | 1042 |
| NspI | RCATGY | 2 cut(s) | 1253, 1520 |
| OliI | CACNNNNGTG | 2 cut(s) | 372, 623 |
| PaeI | GCATGC | 1 cut(s) | 1520 |
| PagI | TCATGA | 1 cut(s) | 922 |
| PciI | ACATGT | 1 cut(s) | 1249 |
| PctI | GAATGC | 1 cut(s) | 1454 |
| PfeI | GAWTC | 4 cut(s) | 541, 1205, 1226, 1255 |
| PkrI | GCNGC | 4 cut(s) | 1045, 1126, 1129, 1515 |
| PleI | GAGTC | 3 cut(s) | 136, 572, 944 |
| PmaCI | CACGTG | 1 cut(s) | 1409 |
| PmlI | CACGTG | 1 cut(s) | 1409 |
| PpsI | GAGTC | 3 cut(s) | 136, 572, 944 |
| Ppu21I | YACGTR | 1 cut(s) | 1409 |
| PscI | ACATGT | 1 cut(s) | 1249 |
| PshBI | ATTAAT | 1 cut(s) | 498 |
| PsiI | TTATAA | 1 cut(s) | 192 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspCI | CACGTG | 1 cut(s) | 1409 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 5 cut(s) | 12, 402, 1053, 1141, 1378 |
| PspOMI | GGGCCC | 1 cut(s) | 400 |
| PspPI | GGNCC | 4 cut(s) | 400, 401, 1140, 1466 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1311, 1343 |
| PstI | CTGCAG | 2 cut(s) | 1129, 1375 |
| PsuI | RGATCY | 1 cut(s) | 1051 |
| PvuII | CAGCTG | 2 cut(s) | 1130, 1478 |
| RsaI | GTAC | 4 cut(s) | 12, 789, 1198, 1462 |
| RsaNI | GTAC | 4 cut(s) | 11, 788, 1197, 1461 |
| RseI | CAYNNNNRTG | 3 cut(s) | 372, 623, 912 |
| SatI | GCNGC | 4 cut(s) | 1044, 1125, 1128, 1514 |
| Sau3AI | GATC | 4 cut(s) | 73, 517, 577, 1051 |
| Sau96I | GGNCC | 4 cut(s) | 400, 401, 1140, 1466 |
| ScaI | AGTACT | 1 cut(s) | 1462 |
| SchI | GAGTC | 3 cut(s) | 137, 573, 944 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SduI | GDGCHC | 4 cut(s) | 55, 404, 1370, 1534 |
| SfaNI | GCATC | 2 cut(s) | 889, 950 |
| SfcI | CTRYAG | 2 cut(s) | 1125, 1371 |
| SinI | GGWCC | 1 cut(s) | 1466 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 372, 623, 912 |
| SmlI | CTYRAG | 2 cut(s) | 386, 452 |
| SmoI | CTYRAG | 2 cut(s) | 386, 452 |
| SphI | GCATGC | 1 cut(s) | 1520 |
| SspMI | CTAG | 3 cut(s) | 6, 282, 1548 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| StyI | CCWWGG | 3 cut(s) | 1331, 1469, 1547 |
| TaaI | ACNGT | 3 cut(s) | 412, 973, 1196 |
| TaiI | ACGT | 3 cut(s) | 106, 1077, 1411 |
| TaqI | TCGA | 1 cut(s) | 1077 |
| TatI | WGTACW | 2 cut(s) | 1196, 1460 |
| TfiI | GAWTC | 4 cut(s) | 541, 1205, 1226, 1255 |
| TscAI | CASTG | 2 cut(s) | 784, 1375 |
| TseFI | GTSAC | 1 cut(s) | 712 |
| TseI | GCWGC | 4 cut(s) | 1043, 1124, 1127, 1513 |
| Tsp45I | GTSAC | 1 cut(s) | 712 |
| TspDTI | ATGAA | 6 cut(s) | 288, 911, 939, 1082, 1176, 1514 |
| TspGWI | ACGGA | 1 cut(s) | 1163 |
| TspRI | CASTG | 2 cut(s) | 784, 1375 |
| VpaK11BI | GGWCC | 1 cut(s) | 1466 |
| VspI | ATTAAT | 1 cut(s) | 498 |
| XapI | RAATTY | 8 cut(s) | 110, 119, 176, 218, 230, 718, 927, 1079 |
| XceI | RCATGY | 2 cut(s) | 1253, 1520 |
| XmaJI | CCTAGG | 1 cut(s) | 1547 |
| XmiI | GTMKAC | 2 cut(s) | 407, 837 |
| XspI | CTAG | 3 cut(s) | 6, 282, 1548 |
| ZrmI | AGTACT | 1 cut(s) | 1462 |