BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 380 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 513, 679 |
| Acc65I | GGTACC | 2 cut(s) | 37, 628 |
| AccB1I | GGYRCC | 2 cut(s) | 37, 628 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1033, 1851 |
| AccI | GTMKAC | 1 cut(s) | 1453 |
| AciI | CCGC | 3 cut(s) | 304, 1539, 1892 |
| AclI | AACGTT | 1 cut(s) | 422 |
| AclWI | GGATC | 3 cut(s) | 1313, 1326, 1397 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AcsI | RAATTY | 6 cut(s) | 228, 382, 595, 941, 1185, 1362 |
| AcuI | CTGAAG | 3 cut(s) | 906, 974, 1530 |
| AdeI | CACNNNGTG | 1 cut(s) | 361 |
| AfaI | GTAC | 8 cut(s) | 39, 130, 630, 1006, 1328, 1690, 1697, 1804 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 644, 1033, 1545, 1851 |
| AjnI | CCWGG | 4 cut(s) | 40, 274, 502, 549 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 735, 767 |
| AluBI | AGCT | 5 cut(s) | 665, 952, 964, 988, 1236 |
| AluI | AGCT | 5 cut(s) | 665, 952, 964, 988, 1236 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| Alw26I | GTCTC | 1 cut(s) | 1376 |
| AlwI | GGATC | 3 cut(s) | 1313, 1326, 1397 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 550 |
| Ama87I | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| AoxI | GGCC | 3 cut(s) | 120, 450, 700 |
| ApeKI | GCWGC | 6 cut(s) | 306, 309, 1208, 1287, 1514, 1817 |
| ApoI | RAATTY | 6 cut(s) | 228, 382, 595, 941, 1185, 1362 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1435, 1467 |
| AseI | ATTAAT | 1 cut(s) | 1466 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1137 |
| Asp718I | GGTACC | 2 cut(s) | 37, 628 |
| AspLEI | GCGC | 2 cut(s) | 69, 1651 |
| AspS9I | GGNCC | 3 cut(s) | 120, 700, 1865 |
| AsuHPI | GGTGA | 3 cut(s) | 659, 703, 1342 |
| AvaI | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| AvaII | GGWCC | 1 cut(s) | 1865 |
| BalI | TGGCCA | 1 cut(s) | 452 |
| BamHI | GGATCC | 1 cut(s) | 1318 |
| BanI | GGYRCC | 2 cut(s) | 37, 628 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1122, 1154 |
| BauI | CACGAG | 2 cut(s) | 341, 831 |
| BbsI | GAAGAC | 1 cut(s) | 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvI | GCAGC | 6 cut(s) | 293, 321, 1220, 1274, 1526, 1829 |
| BccI | CCATC | 7 cut(s) | 181, 461, 640, 722, 1400, 1538, 1915 |
| BceAI | ACGGC | 2 cut(s) | 228, 1196 |
| BciT130I | CCWGG | 4 cut(s) | 42, 276, 504, 551 |
| BciVI | GTATCC | 1 cut(s) | 357 |
| BclI | TGATCA | 1 cut(s) | 1242 |
| BcoDI | GTCTC | 1 cut(s) | 1376 |
| BfaI | CTAG | 2 cut(s) | 132, 975 |
| BfmI | CTRYAG | 1 cut(s) | 307 |
| BfuI | GTATCC | 1 cut(s) | 357 |
| BglII | AGATCT | 2 cut(s) | 158, 1496 |
| BisI | GCNGC | 8 cut(s) | 307, 310, 1209, 1288, 1515, 1539, 1818, 1892 |
| BlsI | GCNGC | 8 cut(s) | 308, 311, 1210, 1289, 1516, 1540, 1819, 1893 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 276, 504, 551 |
| Bme18I | GGWCC | 1 cut(s) | 1865 |
| BmeT110I | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| BmgT120I | GGNCC | 3 cut(s) | 120, 700, 1865 |
| BmiI | GGNNCC | 6 cut(s) | 39, 121, 280, 630, 770, 1320 |
| BmrFI | CCNGG | 4 cut(s) | 42, 276, 504, 551 |
| BmrI | ACTGGG | 1 cut(s) | 230 |
| BmsI | GCATC | 4 cut(s) | 280, 1191, 1428, 1532 |
| BmuI | ACTGGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 923 |
| BsaBI | GATNNNNATC | 2 cut(s) | 332, 1566 |
| BsaJI | CCNNGG | 4 cut(s) | 502, 550, 1322, 1845 |
| BsaWI | WCCGGW | 1 cut(s) | 1456 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 644, 1033, 1545, 1851 |
| Bse118I | RCCGGY | 1 cut(s) | 702 |
| Bse1I | ACTGG | 5 cut(s) | 148, 181, 236, 596, 1739 |
| Bse8I | GATNNNNATC | 2 cut(s) | 332, 1566 |
| BseBI | CCWGG | 4 cut(s) | 42, 276, 504, 551 |
| BseDI | CCNNGG | 4 cut(s) | 502, 550, 1322, 1845 |
| BseGI | GGATG | 2 cut(s) | 131, 192 |
| BseJI | GATNNNNATC | 2 cut(s) | 332, 1566 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 644, 1033, 1545, 1851 |
| BseMII | CTCAG | 2 cut(s) | 419, 1371 |
| BseNI | ACTGG | 5 cut(s) | 148, 181, 236, 596, 1739 |
| BseXI | GCAGC | 6 cut(s) | 293, 321, 1220, 1274, 1526, 1829 |
| BseYI | CCCAGC | 1 cut(s) | 862 |
| BsgI | GTGCAG | 1 cut(s) | 1836 |
| BshFI | GGCC | 3 cut(s) | 122, 452, 702 |
| BshNI | GGYRCC | 2 cut(s) | 37, 628 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| BsiSI | CCGG | 3 cut(s) | 123, 703, 1457 |
| BslFI | GGGAC | 1 cut(s) | 1028 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 644, 1033, 1545, 1851 |
| BsmAI | GTCTC | 1 cut(s) | 1376 |
| BsmFI | GGGAC | 1 cut(s) | 1028 |
| BsmI | GAATGC | 3 cut(s) | 449, 1381, 1449 |
| BsnI | GGCC | 3 cut(s) | 122, 452, 702 |
| BsoBI | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 771 |
| Bsp143I | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| BspACI | CCGC | 3 cut(s) | 304, 1539, 1892 |
| BspANI | GGCC | 3 cut(s) | 122, 452, 702 |
| BspCNI | CTCAG | 2 cut(s) | 418, 1372 |
| BspHI | TCATGA | 3 cut(s) | 885, 1414, 1528 |
| BspLI | GGNNCC | 6 cut(s) | 39, 121, 280, 630, 770, 1320 |
| BspMAI | CTGCAG | 1 cut(s) | 311 |
| BspPI | GGATC | 3 cut(s) | 1313, 1326, 1397 |
| BspT107I | GGYRCC | 2 cut(s) | 37, 628 |
| BsrFI | RCCGGY | 1 cut(s) | 702 |
| BsrI | ACTGG | 5 cut(s) | 148, 181, 236, 596, 1739 |
| BssAI | RCCGGY | 1 cut(s) | 702 |
| BssECI | CCNNGG | 4 cut(s) | 502, 550, 1322, 1845 |
| BssMI | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| BssSI | CACGAG | 2 cut(s) | 341, 831 |
| BssT1I | CCWWGG | 1 cut(s) | 1845 |
| Bst2BI | CACGAG | 2 cut(s) | 341, 831 |
| Bst2UI | CCWGG | 4 cut(s) | 42, 276, 504, 551 |
| Bst4CI | ACNGT | 7 cut(s) | 115, 523, 605, 803, 1750, 1796, 1802 |
| Bst6I | CTCTTC | 4 cut(s) | 402, 1143, 1427, 1620 |
| BstC8I | GCNNGC | 5 cut(s) | 56, 139, 193, 1069, 1206 |
| BstDEI | CTNAG | 6 cut(s) | 63, 324, 405, 1072, 1380, 1448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 642 |
| BstF5I | GGATG | 2 cut(s) | 131, 192 |
| BstHHI | GCGC | 2 cut(s) | 69, 1651 |
| BstKTI | GATC | 7 cut(s) | 161, 395, 1003, 1245, 1321, 1392, 1499 |
| BstMAI | GTCTC | 1 cut(s) | 1376 |
| BstMBI | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 64, 240, 1520 |
| BstNI | CCWGG | 4 cut(s) | 42, 276, 504, 551 |
| BstNSI | RCATGY | 2 cut(s) | 695, 796 |
| BstSCI | CCNGG | 4 cut(s) | 40, 274, 502, 549 |
| BstSFI | CTRYAG | 1 cut(s) | 307 |
| BstV1I | GCAGC | 6 cut(s) | 293, 321, 1220, 1274, 1526, 1829 |
| BstV2I | GAAGAC | 1 cut(s) | 923 |
| BstX2I | RGATCY | 3 cut(s) | 158, 1318, 1496 |
| BstYI | RGATCY | 3 cut(s) | 158, 1318, 1496 |
| BsuI | GTATCC | 1 cut(s) | 357 |
| BsuRI | GGCC | 3 cut(s) | 122, 452, 702 |
| BtsCI | GGATG | 2 cut(s) | 131, 192 |
| BtsIMutI | CAGTG | 3 cut(s) | 155, 528, 1773 |
| Cac8I | GCNNGC | 5 cut(s) | 56, 139, 193, 1069, 1206 |
| CaiI | CAGNNNCTG | 1 cut(s) | 550 |
| CciI | TCATGA | 3 cut(s) | 885, 1414, 1528 |
| CfoI | GCGC | 2 cut(s) | 69, 1651 |
| Cfr10I | RCCGGY | 1 cut(s) | 702 |
| Cfr13I | GGNCC | 3 cut(s) | 120, 700, 1865 |
| CsiI | ACCWGGT | 1 cut(s) | 40 |
| Csp6I | GTAC | 8 cut(s) | 38, 129, 629, 1005, 1327, 1689, 1696, 1803 |
| CviAII | CATG | 9 cut(s) | 314, 337, 692, 793, 886, 932, 1415, 1529, 1862 |
| CviQI | GTAC | 8 cut(s) | 38, 129, 629, 1005, 1327, 1689, 1696, 1803 |
| DdeI | CTNAG | 6 cut(s) | 63, 324, 405, 1072, 1380, 1448 |
| DpnI | GATC | 7 cut(s) | 160, 394, 1002, 1244, 1320, 1391, 1498 |
| DpnII | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| DraIII | CACNNNGTG | 1 cut(s) | 361 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 513, 679 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 513, 679 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 4 cut(s) | 402, 1143, 1427, 1620 |
| EarI | CTCTTC | 4 cut(s) | 402, 1143, 1427, 1620 |
| Eco130I | CCWWGG | 1 cut(s) | 1845 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco32I | GATATC | 1 cut(s) | 1579 |
| Eco47I | GGWCC | 1 cut(s) | 1865 |
| Eco57I | CTGAAG | 3 cut(s) | 906, 974, 1530 |
| Eco88I | CYCGRG | 3 cut(s) | 1427, 1644, 1826 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 642 |
| EcoRI | GAATTC | 1 cut(s) | 595 |
| EcoRII | CCWGG | 4 cut(s) | 40, 274, 502, 549 |
| EcoRV | GATATC | 1 cut(s) | 1579 |
| EcoT14I | CCWWGG | 1 cut(s) | 1845 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| ErhI | CCWWGG | 1 cut(s) | 1845 |
| FaeI | CATG | 9 cut(s) | 317, 340, 695, 796, 889, 935, 1418, 1532, 1865 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 756, 788 |
| FaqI | GGGAC | 1 cut(s) | 1028 |
| FatI | CATG | 9 cut(s) | 313, 336, 691, 792, 885, 931, 1414, 1528, 1861 |
| FauNDI | CATATG | 3 cut(s) | 1029, 1081, 1838 |
| FbaI | TGATCA | 1 cut(s) | 1242 |
| FblI | GTMKAC | 1 cut(s) | 1453 |
| Fnu4HI | GCNGC | 8 cut(s) | 307, 310, 1209, 1288, 1515, 1539, 1818, 1892 |
| FokI | GGATG | 2 cut(s) | 138, 199 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 8 cut(s) | 307, 310, 1209, 1288, 1515, 1539, 1818, 1892 |
| FspBI | CTAG | 2 cut(s) | 132, 975 |
| GlaI | GCGC | 2 cut(s) | 68, 1650 |
| GluI | GCNGC | 8 cut(s) | 307, 310, 1209, 1288, 1515, 1539, 1818, 1892 |
| GsaI | CCCAGC | 1 cut(s) | 866 |
| HaeIII | GGCC | 3 cut(s) | 122, 452, 702 |
| HapII | CCGG | 3 cut(s) | 123, 703, 1457 |
| HhaI | GCGC | 2 cut(s) | 69, 1651 |
| Hin1II | CATG | 9 cut(s) | 317, 340, 695, 796, 889, 935, 1418, 1532, 1865 |
| Hin6I | GCGC | 2 cut(s) | 67, 1649 |
| HinP1I | GCGC | 2 cut(s) | 67, 1649 |
| HindIII | AAGCTT | 1 cut(s) | 986 |
| HinfI | GANTC | 9 cut(s) | 262, 484, 641, 926, 1085, 1123, 1223, 1628, 1760 |
| HpaII | CCGG | 3 cut(s) | 123, 703, 1457 |
| HphI | GGTGA | 3 cut(s) | 659, 703, 1342 |
| Hpy166II | GTNNAC | 4 cut(s) | 526, 534, 711, 1454 |
| Hpy8I | GTNNAC | 4 cut(s) | 526, 534, 711, 1454 |
| HpyAV | CCTTC | 2 cut(s) | 1363, 1469 |
| HpyCH4III | ACNGT | 7 cut(s) | 115, 523, 605, 803, 1750, 1796, 1802 |
| HpyCH4IV | ACGT | 1 cut(s) | 422 |
| HpyCH4V | TGCA | 7 cut(s) | 153, 167, 309, 340, 1157, 1204, 1817 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 64, 240, 1520 |
| HpyF3I | CTNAG | 6 cut(s) | 63, 324, 405, 1072, 1380, 1448 |
| HpySE526I | ACGT | 1 cut(s) | 422 |
| Hsp92II | CATG | 9 cut(s) | 317, 340, 695, 796, 889, 935, 1418, 1532, 1865 |
| HspAI | GCGC | 2 cut(s) | 67, 1649 |
| KpnI | GGTACC | 2 cut(s) | 41, 632 |
| Ksp22I | TGATCA | 1 cut(s) | 1242 |
| Kzo9I | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| LmnI | GCTCC | 4 cut(s) | 94, 284, 364, 774 |
| Lsp1109I | GCAGC | 6 cut(s) | 293, 321, 1220, 1274, 1526, 1829 |
| LweI | GCATC | 4 cut(s) | 280, 1191, 1428, 1532 |
| MabI | ACCWGGT | 1 cut(s) | 40 |
| MaeI | CTAG | 2 cut(s) | 132, 975 |
| MaeII | ACGT | 1 cut(s) | 422 |
| MaeIII | GTNAC | 5 cut(s) | 143, 418, 587, 647, 1796 |
| MalI | GATC | 7 cut(s) | 160, 394, 1002, 1244, 1320, 1391, 1498 |
| MboI | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| MfeI | CAATTG | 3 cut(s) | 105, 993, 1302 |
| MflI | RGATCY | 3 cut(s) | 158, 1318, 1496 |
| MhlI | GDGCHC | 2 cut(s) | 99, 771 |
| MlsI | TGGCCA | 1 cut(s) | 452 |
| MluNI | TGGCCA | 1 cut(s) | 452 |
| MlyI | GAGTC | 5 cut(s) | 256, 1132, 1217, 1637, 1754 |
| Mox20I | TGGCCA | 1 cut(s) | 452 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1137 |
| MscI | TGGCCA | 1 cut(s) | 452 |
| MseI | TTAA | 5 cut(s) | 206, 426, 566, 906, 1466 |
| Msp20I | TGGCCA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 2 cut(s) | 306, 952 |
| MspI | CCGG | 3 cut(s) | 123, 703, 1457 |
| MspR9I | CCNGG | 4 cut(s) | 42, 276, 504, 551 |
| MunI | CAATTG | 3 cut(s) | 105, 993, 1302 |
| Mva1269I | GAATGC | 3 cut(s) | 449, 1381, 1449 |
| MvaI | CCWGG | 4 cut(s) | 42, 276, 504, 551 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 64, 240, 1520 |
| NdeI | CATATG | 3 cut(s) | 1029, 1081, 1838 |
| NdeII | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| NlaIII | CATG | 9 cut(s) | 317, 340, 695, 796, 889, 935, 1418, 1532, 1865 |
| NlaIV | GGNNCC | 6 cut(s) | 39, 121, 280, 630, 770, 1320 |
| NmuCI | GTSAC | 2 cut(s) | 587, 647 |
| NspI | RCATGY | 2 cut(s) | 695, 796 |
| PaeR7I | CTCGAG | 2 cut(s) | 1427, 1826 |
| PagI | TCATGA | 3 cut(s) | 885, 1414, 1528 |
| PctI | GAATGC | 3 cut(s) | 449, 1381, 1449 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1137 |
| PfeI | GAWTC | 4 cut(s) | 484, 641, 926, 1085 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1033, 1851 |
| PkrI | GCNGC | 8 cut(s) | 308, 311, 1210, 1289, 1516, 1540, 1819, 1893 |
| PleI | GAGTC | 5 cut(s) | 256, 1131, 1217, 1636, 1754 |
| PpsI | GAGTC | 5 cut(s) | 256, 1131, 1217, 1636, 1754 |
| PshBI | ATTAAT | 1 cut(s) | 1466 |
| PsiI | TTATAA | 1 cut(s) | 380 |
| Psp1406I | AACGTT | 1 cut(s) | 422 |
| Psp6I | CCWGG | 4 cut(s) | 40, 274, 502, 549 |
| PspFI | CCCAGC | 1 cut(s) | 862 |
| PspGI | CCWGG | 4 cut(s) | 40, 274, 502, 549 |
| PspN4I | GGNNCC | 6 cut(s) | 39, 121, 280, 630, 770, 1320 |
| PspPI | GGNCC | 3 cut(s) | 120, 700, 1865 |
| PspXI | VCTCGAGB | 1 cut(s) | 1427 |
| PstI | CTGCAG | 1 cut(s) | 311 |
| PstNI | CAGNNNCTG | 1 cut(s) | 550 |
| PsuI | RGATCY | 3 cut(s) | 158, 1318, 1496 |
| PvuII | CAGCTG | 1 cut(s) | 952 |
| RsaI | GTAC | 8 cut(s) | 39, 130, 630, 1006, 1328, 1690, 1697, 1804 |
| RsaNI | GTAC | 8 cut(s) | 38, 129, 629, 1005, 1327, 1689, 1696, 1803 |
| SaqAI | TTAA | 5 cut(s) | 206, 426, 566, 906, 1466 |
| SatI | GCNGC | 8 cut(s) | 307, 310, 1209, 1288, 1515, 1539, 1818, 1892 |
| Sau3AI | GATC | 7 cut(s) | 158, 392, 1000, 1242, 1318, 1389, 1496 |
| Sau96I | GGNCC | 3 cut(s) | 120, 700, 1865 |
| SchI | GAGTC | 5 cut(s) | 256, 1132, 1217, 1637, 1754 |
| ScrFI | CCNGG | 4 cut(s) | 42, 276, 504, 551 |
| SduI | GDGCHC | 2 cut(s) | 99, 771 |
| SexAI | ACCWGGT | 1 cut(s) | 40 |
| SfaNI | GCATC | 4 cut(s) | 280, 1191, 1428, 1532 |
| SfcI | CTRYAG | 1 cut(s) | 307 |
| Sfr274I | CTCGAG | 2 cut(s) | 1427, 1826 |
| SinI | GGWCC | 1 cut(s) | 1865 |
| SlaI | CTCGAG | 2 cut(s) | 1427, 1826 |
| SmlI | CTYRAG | 2 cut(s) | 1427, 1826 |
| SmoI | CTYRAG | 2 cut(s) | 1427, 1826 |
| SsiI | CCGC | 3 cut(s) | 304, 1539, 1892 |
| SspMI | CTAG | 2 cut(s) | 132, 975 |
| StyD4I | CCNGG | 4 cut(s) | 40, 274, 502, 549 |
| StyI | CCWWGG | 1 cut(s) | 1845 |
| TaaI | ACNGT | 7 cut(s) | 115, 523, 605, 803, 1750, 1796, 1802 |
| TaiI | ACGT | 1 cut(s) | 425 |
| TaqI | TCGA | 3 cut(s) | 1428, 1659, 1827 |
| TatI | WGTACW | 2 cut(s) | 128, 1688 |
| TauI | GCSGC | 2 cut(s) | 1541, 1894 |
| TfiI | GAWTC | 4 cut(s) | 484, 641, 926, 1085 |
| Tru1I | TTAA | 5 cut(s) | 206, 426, 566, 906, 1466 |
| Tru9I | TTAA | 5 cut(s) | 206, 426, 566, 906, 1466 |
| TscAI | CASTG | 3 cut(s) | 155, 528, 1780 |
| TseFI | GTSAC | 2 cut(s) | 587, 647 |
| TseI | GCWGC | 6 cut(s) | 306, 309, 1208, 1287, 1514, 1817 |
| Tsp45I | GTSAC | 2 cut(s) | 587, 647 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| TspRI | CASTG | 3 cut(s) | 155, 528, 1780 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1033, 1851 |
| VpaK11BI | GGWCC | 1 cut(s) | 1865 |
| VspI | ATTAAT | 1 cut(s) | 1466 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 642 |
| XapI | RAATTY | 6 cut(s) | 228, 382, 595, 941, 1185, 1362 |
| XceI | RCATGY | 2 cut(s) | 695, 796 |
| XhoI | CTCGAG | 2 cut(s) | 1427, 1826 |
| XmiI | GTMKAC | 1 cut(s) | 1453 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1137 |
| XspI | CTAG | 2 cut(s) | 132, 975 |