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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 133 |
| AatII | GACGTC | 1 cut(s) | 131 |
| AccI | GTMKAC | 1 cut(s) | 187 |
| AccII | CGCG | 1 cut(s) | 258 |
| AciI | CCGC | 8 cut(s) | 84, 120, 179, 256, 258, 322, 412, 415 |
| AcoI | YGGCCR | 3 cut(s) | 323, 344, 436 |
| AcsI | RAATTY | 4 cut(s) | 236, 268, 300, 441 |
| AcyI | GRCGYC | 2 cut(s) | 92, 128 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 57, 247, 261, 262, 311, 318, 325, 346, 353 |
| AjnI | CCWGG | 1 cut(s) | 453 |
| AoxI | GGCC | 4 cut(s) | 59, 323, 344, 436 |
| ApeKI | GCWGC | 3 cut(s) | 7, 35, 104 |
| ApoI | RAATTY | 4 cut(s) | 236, 268, 300, 441 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 372, 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 1 cut(s) | 212 |
| AsuC2I | CCSGG | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 8 cut(s) | 40, 57, 109, 154, 319, 340, 361, 365 |
| AvaII | GGWCC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 152 |
| BbvI | GCAGC | 2 cut(s) | 47, 116 |
| BceAI | ACGGC | 2 cut(s) | 10, 46 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 1 cut(s) | 455 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcnI | CCSGG | 1 cut(s) | 151 |
| BfaI | CTAG | 2 cut(s) | 230, 386 |
| BisI | GCNGC | 5 cut(s) | 8, 36, 105, 323, 415 |
| BlsI | GCNGC | 5 cut(s) | 9, 37, 106, 324, 416 |
| Bme1390I | CCNGG | 2 cut(s) | 151, 455 |
| Bme18I | GGWCC | 1 cut(s) | 212 |
| BmgT120I | GGNCC | 1 cut(s) | 212 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmrFI | CCNGG | 2 cut(s) | 151, 455 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BoxI | GACNNNNGTC | 4 cut(s) | 250, 282, 314, 356 |
| BpiI | GAAGAC | 1 cut(s) | 152 |
| BpuMI | CCSGG | 1 cut(s) | 151 |
| BsaHI | GRCGYC | 2 cut(s) | 92, 128 |
| BsaJI | CCNNGG | 1 cut(s) | 256 |
| BsaWI | WCCGGW | 5 cut(s) | 247, 304, 311, 339, 353 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 57, 247, 261, 262, 311, 318, 325, 346, 353 |
| Bse118I | RCCGGY | 2 cut(s) | 325, 346 |
| Bse1I | ACTGG | 3 cut(s) | 68, 227, 471 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| BseBI | CCWGG | 1 cut(s) | 455 |
| BseDI | CCNNGG | 1 cut(s) | 256 |
| BseGI | GGATG | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 57, 247, 261, 262, 311, 318, 325, 346, 353 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseNI | ACTGG | 3 cut(s) | 68, 227, 471 |
| BseX3I | CGGCCG | 1 cut(s) | 323 |
| BseXI | GCAGC | 2 cut(s) | 47, 116 |
| Bsh1236I | CGCG | 1 cut(s) | 258 |
| Bsh1285I | CGRYCG | 3 cut(s) | 248, 262, 326 |
| BshFI | GGCC | 4 cut(s) | 61, 325, 346, 438 |
| BsiEI | CGRYCG | 3 cut(s) | 248, 262, 326 |
| BslFI | GGGAC | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 57, 247, 261, 262, 311, 318, 325, 346, 353 |
| BsmFI | GGGAC | 1 cut(s) | 238 |
| BsnI | GGCC | 4 cut(s) | 61, 325, 346, 438 |
| Bsp143I | GATC | 2 cut(s) | 206, 330 |
| BspACI | CCGC | 8 cut(s) | 84, 120, 179, 256, 258, 322, 412, 415 |
| BspANI | GGCC | 4 cut(s) | 61, 325, 346, 438 |
| BspFNI | CGCG | 1 cut(s) | 258 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BsrFI | RCCGGY | 2 cut(s) | 325, 346 |
| BsrI | ACTGG | 3 cut(s) | 68, 227, 471 |
| BssAI | RCCGGY | 2 cut(s) | 325, 346 |
| BssECI | CCNNGG | 1 cut(s) | 256 |
| BssMI | GATC | 2 cut(s) | 206, 330 |
| BssNI | GRCGYC | 2 cut(s) | 92, 128 |
| Bst2UI | CCWGG | 1 cut(s) | 455 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 2 cut(s) | 166, 375 |
| BstACI | GRCGYC | 2 cut(s) | 92, 128 |
| BstDSI | CCRYGG | 1 cut(s) | 256 |
| BstEII | GGTNACC | 2 cut(s) | 307, 349 |
| BstF5I | GGATG | 1 cut(s) | 390 |
| BstFNI | CGCG | 1 cut(s) | 258 |
| BstKTI | GATC | 2 cut(s) | 209, 333 |
| BstMBI | GATC | 2 cut(s) | 206, 330 |
| BstMCI | CGRYCG | 3 cut(s) | 248, 262, 326 |
| BstNI | CCWGG | 1 cut(s) | 455 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 250, 282, 314, 356 |
| BstPI | GGTNACC | 2 cut(s) | 307, 349 |
| BstSCI | CCNGG | 2 cut(s) | 149, 453 |
| BstUI | CGCG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 2 cut(s) | 47, 116 |
| BstV2I | GAAGAC | 1 cut(s) | 152 |
| BstZI | CGGCCG | 1 cut(s) | 323 |
| BsuRI | GGCC | 4 cut(s) | 61, 325, 346, 438 |
| BtgI | CCRYGG | 1 cut(s) | 256 |
| BtgZI | GCGATG | 1 cut(s) | 16 |
| BtsCI | GGATG | 1 cut(s) | 390 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| Cfr10I | RCCGGY | 2 cut(s) | 325, 346 |
| Cfr13I | GGNCC | 1 cut(s) | 212 |
| Cfr42I | CCGCGG | 1 cut(s) | 259 |
| CseI | GACGC | 1 cut(s) | 100 |
| CviAII | CATG | 1 cut(s) | 192 |
| CviJI | RGCY | 5 cut(s) | 61, 325, 346, 438, 458 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 325, 346, 438, 458 |
| DpnI | GATC | 2 cut(s) | 208, 332 |
| DpnII | GATC | 2 cut(s) | 206, 330 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 133 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 133 |
| EaeI | YGGCCR | 3 cut(s) | 323, 344, 436 |
| EagI | CGGCCG | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 2 cut(s) | 166, 375 |
| EarI | CTCTTC | 2 cut(s) | 166, 375 |
| EciI | GGCGGA | 1 cut(s) | 401 |
| EclXI | CGGCCG | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 212 |
| Eco52I | CGGCCG | 1 cut(s) | 323 |
| Eco91I | GGTNACC | 2 cut(s) | 307, 349 |
| EcoO109I | RGGNCCY | 1 cut(s) | 212 |
| EcoO65I | GGTNACC | 2 cut(s) | 307, 349 |
| EcoRII | CCWGG | 1 cut(s) | 453 |
| FaeI | CATG | 1 cut(s) | 195 |
| FaiI | YATR | 4 cut(s) | 161, 193, 449, 451 |
| FaqI | GGGAC | 1 cut(s) | 238 |
| FatI | CATG | 1 cut(s) | 191 |
| FauI | CCCGC | 1 cut(s) | 263 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| FblI | GTMKAC | 1 cut(s) | 187 |
| Fnu4HI | GCNGC | 5 cut(s) | 8, 36, 105, 323, 415 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 5 cut(s) | 8, 36, 105, 323, 415 |
| FspBI | CTAG | 2 cut(s) | 230, 386 |
| GluI | GCNGC | 5 cut(s) | 8, 36, 105, 323, 415 |
| HaeIII | GGCC | 4 cut(s) | 61, 325, 346, 438 |
| HgaI | GACGC | 1 cut(s) | 100 |
| Hin1I | GRCGYC | 2 cut(s) | 92, 128 |
| Hin1II | CATG | 1 cut(s) | 195 |
| HinfI | GANTC | 5 cut(s) | 251, 315, 336, 357, 365 |
| HphI | GGTGA | 8 cut(s) | 40, 57, 109, 154, 319, 340, 361, 365 |
| Hpy166II | GTNNAC | 1 cut(s) | 188 |
| Hpy188I | TCNGA | 5 cut(s) | 157, 274, 288, 335, 362 |
| Hpy8I | GTNNAC | 1 cut(s) | 188 |
| Hpy99I | CGWCG | 6 cut(s) | 43, 94, 130, 133, 136, 407 |
| HpyAV | CCTTC | 3 cut(s) | 157, 283, 439 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 2 cut(s) | 41, 128 |
| HpyCH4V | TGCA | 2 cut(s) | 17, 104 |
| HpySE526I | ACGT | 2 cut(s) | 41, 128 |
| Hsp92I | GRCGYC | 2 cut(s) | 92, 128 |
| Hsp92II | CATG | 1 cut(s) | 195 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| KspI | CCGCGG | 1 cut(s) | 259 |
| Kzo9I | GATC | 2 cut(s) | 206, 330 |
| Lsp1109I | GCAGC | 2 cut(s) | 47, 116 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 2 cut(s) | 230, 386 |
| MaeII | ACGT | 2 cut(s) | 41, 128 |
| MaeIII | GTNAC | 5 cut(s) | 63, 218, 225, 307, 349 |
| MalI | GATC | 2 cut(s) | 208, 332 |
| MboI | GATC | 2 cut(s) | 206, 330 |
| MboII | GAAGA | 3 cut(s) | 157, 183, 362 |
| MluCI | AATT | 4 cut(s) | 236, 268, 300, 441 |
| MlyI | GAGTC | 4 cut(s) | 260, 324, 345, 366 |
| MnlI | CCTC | 4 cut(s) | 51, 160, 419, 434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MspA1I | CMGCKG | 1 cut(s) | 258 |
| MspR9I | CCNGG | 2 cut(s) | 151, 455 |
| MvaI | CCWGG | 1 cut(s) | 455 |
| MvnI | CGCG | 1 cut(s) | 258 |
| NciI | CCSGG | 1 cut(s) | 151 |
| NdeII | GATC | 2 cut(s) | 206, 330 |
| NlaIII | CATG | 1 cut(s) | 195 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| NmuCI | GTSAC | 3 cut(s) | 63, 307, 349 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 131 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 365 |
| PflFI | GACNNNGTC | 2 cut(s) | 130, 151 |
| PkrI | GCNGC | 5 cut(s) | 9, 37, 106, 324, 416 |
| PleI | GAGTC | 4 cut(s) | 259, 323, 344, 365 |
| PpsI | GAGTC | 4 cut(s) | 259, 323, 344, 365 |
| PpuMI | RGGWCCY | 1 cut(s) | 212 |
| PshAI | GACNNNNGTC | 4 cut(s) | 250, 282, 314, 356 |
| Psp5II | RGGWCCY | 1 cut(s) | 212 |
| Psp6I | CCWGG | 1 cut(s) | 453 |
| PspEI | GGTNACC | 2 cut(s) | 307, 349 |
| PspGI | CCWGG | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 1 cut(s) | 212 |
| PspPPI | RGGWCCY | 1 cut(s) | 212 |
| PsyI | GACNNNGTC | 2 cut(s) | 130, 151 |
| SacII | CCGCGG | 1 cut(s) | 259 |
| SatI | GCNGC | 5 cut(s) | 8, 36, 105, 323, 415 |
| Sau3AI | GATC | 2 cut(s) | 206, 330 |
| Sau96I | GGNCC | 1 cut(s) | 212 |
| SchI | GAGTC | 4 cut(s) | 260, 324, 345, 366 |
| ScrFI | CCNGG | 2 cut(s) | 151, 455 |
| SetI | ASST | 6 cut(s) | 44, 131, 214, 294, 411, 426 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| Sfr303I | CCGCGG | 1 cut(s) | 259 |
| SgrBI | CCGCGG | 1 cut(s) | 259 |
| SinI | GGWCC | 1 cut(s) | 212 |
| Sse9I | AATT | 4 cut(s) | 236, 268, 300, 441 |
| SsiI | CCGC | 8 cut(s) | 84, 120, 179, 256, 258, 322, 412, 415 |
| SspMI | CTAG | 2 cut(s) | 230, 386 |
| StyD4I | CCNGG | 2 cut(s) | 149, 453 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TaiI | ACGT | 2 cut(s) | 44, 131 |
| TaqI | TCGA | 1 cut(s) | 294 |
| TasI | AATT | 4 cut(s) | 236, 268, 300, 441 |
| TauI | GCSGC | 2 cut(s) | 325, 417 |
| TfiI | GAWTC | 1 cut(s) | 365 |
| TscAI | CASTG | 1 cut(s) | 75 |
| TseFI | GTSAC | 3 cut(s) | 63, 307, 349 |
| TseI | GCWGC | 3 cut(s) | 7, 35, 104 |
| Tsp45I | GTSAC | 3 cut(s) | 63, 307, 349 |
| TspDTI | ATGAA | 3 cut(s) | 19, 88, 176 |
| TspRI | CASTG | 1 cut(s) | 75 |
| Tth111I | GACNNNGTC | 2 cut(s) | 130, 151 |
| VpaK11BI | GGWCC | 1 cut(s) | 212 |
| XapI | RAATTY | 4 cut(s) | 236, 268, 300, 441 |
| XmiI | GTMKAC | 1 cut(s) | 187 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 230, 386 |
| ZraI | GACGTC | 1 cut(s) | 129 |