Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 401 - 499 | 9.6e-26 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 629, 1395 |
| AciI | CCGC | 1 cut(s) | 653 |
| AclWI | GGATC | 3 cut(s) | 305, 1379, 1392 |
| AcsI | RAATTY | 7 cut(s) | 46, 525, 856, 906, 1108, 1225, 1441 |
| AcuI | CTGAAG | 1 cut(s) | 1152 |
| AfaI | GTAC | 2 cut(s) | 1214, 1496 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 659 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 547, 1016 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 35 |
| AluBI | AGCT | 5 cut(s) | 430, 455, 1258, 1399, 1429 |
| AluI | AGCT | 5 cut(s) | 430, 455, 1258, 1399, 1429 |
| Alw21I | GWGCWC | 3 cut(s) | 169, 563, 847 |
| Alw26I | GTCTC | 1 cut(s) | 1003 |
| Alw44I | GTGCAC | 1 cut(s) | 559 |
| AlwI | GGATC | 3 cut(s) | 305, 1379, 1392 |
| ApaLI | GTGCAC | 1 cut(s) | 559 |
| ApeKI | GCWGC | 1 cut(s) | 1271 |
| ApoI | RAATTY | 7 cut(s) | 46, 525, 856, 906, 1108, 1225, 1441 |
| AseI | ATTAAT | 1 cut(s) | 1086 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 2 cut(s) | 830, 1162 |
| AsuII | TTCGAA | 1 cut(s) | 1160 |
| BaeGI | GKGCMC | 1 cut(s) | 563 |
| BamHI | GGATCC | 1 cut(s) | 1384 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1242, 1274 |
| BbsI | GAAGAC | 2 cut(s) | 200, 794 |
| Bbv12I | GWGCWC | 3 cut(s) | 169, 563, 847 |
| BbvI | GCAGC | 1 cut(s) | 1283 |
| BccI | CCATC | 5 cut(s) | 146, 560, 866, 1023, 1300 |
| BciVI | GTATCC | 2 cut(s) | 130, 1166 |
| BcoDI | GTCTC | 1 cut(s) | 1003 |
| BfaI | CTAG | 6 cut(s) | 51, 72, 945, 1026, 1052, 1621 |
| BfuI | GTATCC | 2 cut(s) | 130, 1166 |
| BglII | AGATCT | 1 cut(s) | 16 |
| BisI | GCNGC | 1 cut(s) | 1272 |
| BlsI | GCNGC | 1 cut(s) | 1273 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 547, 1016 |
| BmiI | GGNNCC | 1 cut(s) | 1386 |
| BmsI | GCATC | 3 cut(s) | 293, 927, 1567 |
| BpiI | GAAGAC | 2 cut(s) | 200, 794 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 789, 821 |
| Bpu14I | TTCGAA | 1 cut(s) | 1160 |
| Bsa29I | ATCGAT | 1 cut(s) | 1072 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 659 |
| Bse1I | ACTGG | 1 cut(s) | 664 |
| Bse3DI | GCAATG | 1 cut(s) | 491 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseCI | ATCGAT | 1 cut(s) | 1072 |
| BseDI | CCNNGG | 1 cut(s) | 325 |
| BseGI | GGATG | 1 cut(s) | 474 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 659 |
| BseMI | GCAATG | 1 cut(s) | 491 |
| BseMII | CTCAG | 3 cut(s) | 569, 690, 930 |
| BseNI | ACTGG | 1 cut(s) | 664 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 563 |
| BseXI | GCAGC | 1 cut(s) | 1283 |
| BshVI | ATCGAT | 1 cut(s) | 1072 |
| BsiHKAI | GWGCWC | 3 cut(s) | 169, 563, 847 |
| BslFI | GGGAC | 3 cut(s) | 229, 1004, 1219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 659 |
| BsmAI | GTCTC | 1 cut(s) | 1003 |
| BsmFI | GGGAC | 3 cut(s) | 229, 1004, 1219 |
| BsmI | GAATGC | 1 cut(s) | 920 |
| Bsp119I | TTCGAA | 1 cut(s) | 1160 |
| Bsp1286I | GDGCHC | 3 cut(s) | 169, 563, 847 |
| Bsp143I | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| BspACI | CCGC | 1 cut(s) | 653 |
| BspCNI | CTCAG | 3 cut(s) | 568, 691, 931 |
| BspDI | ATCGAT | 1 cut(s) | 1072 |
| BspHI | TCATGA | 1 cut(s) | 1296 |
| BspLI | GGNNCC | 1 cut(s) | 1386 |
| BspPI | GGATC | 3 cut(s) | 305, 1379, 1392 |
| BspT104I | TTCGAA | 1 cut(s) | 1160 |
| BsrDI | GCAATG | 1 cut(s) | 491 |
| BsrI | ACTGG | 1 cut(s) | 664 |
| BssECI | CCNNGG | 1 cut(s) | 325 |
| BssMI | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 1355, 1564 |
| Bst6I | CTCTTC | 1 cut(s) | 1128 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 584 |
| BstBI | TTCGAA | 1 cut(s) | 1160 |
| BstDEI | CTNAG | 3 cut(s) | 555, 699, 939 |
| BstDSI | CCRYGG | 1 cut(s) | 325 |
| BstF5I | GGATG | 1 cut(s) | 474 |
| BstKTI | GATC | 5 cut(s) | 19, 107, 313, 1315, 1387 |
| BstMAI | GTCTC | 1 cut(s) | 1003 |
| BstMBI | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 404, 584, 652 |
| BstNSI | RCATGY | 3 cut(s) | 249, 646, 1194 |
| BstSLI | GKGCMC | 1 cut(s) | 563 |
| BstV1I | GCAGC | 1 cut(s) | 1283 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 794 |
| BstX2I | RGATCY | 2 cut(s) | 16, 1384 |
| BstYI | RGATCY | 2 cut(s) | 16, 1384 |
| Bsu15I | ATCGAT | 1 cut(s) | 1072 |
| BsuI | GTATCC | 2 cut(s) | 130, 1166 |
| BsuTUI | ATCGAT | 1 cut(s) | 1072 |
| BtgI | CCRYGG | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 2 cut(s) | 561, 563 |
| CciI | TCATGA | 1 cut(s) | 1296 |
| ClaI | ATCGAT | 1 cut(s) | 1072 |
| Csp6I | GTAC | 2 cut(s) | 1213, 1495 |
| CviAII | CATG | 9 cut(s) | 212, 246, 383, 435, 643, 830, 1191, 1297, 1433 |
| CviQI | GTAC | 2 cut(s) | 1213, 1495 |
| DdeI | CTNAG | 3 cut(s) | 555, 699, 939 |
| DpnI | GATC | 5 cut(s) | 18, 106, 312, 1314, 1386 |
| DpnII | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| DriI | GACNNNNNGTC | 2 cut(s) | 547, 1016 |
| Eam1104I | CTCTTC | 1 cut(s) | 1128 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 547, 1016 |
| EarI | CTCTTC | 1 cut(s) | 1128 |
| Eco57I | CTGAAG | 1 cut(s) | 1152 |
| EcoRI | GAATTC | 1 cut(s) | 1441 |
| EcoT22I | ATGCAT | 1 cut(s) | 920 |
| FaeI | CATG | 9 cut(s) | 215, 249, 386, 438, 646, 833, 1194, 1300, 1436 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 861, 893, 1108, 1140 |
| FaqI | GGGAC | 3 cut(s) | 229, 1004, 1219 |
| FatI | CATG | 9 cut(s) | 211, 245, 382, 434, 642, 829, 1190, 1296, 1432 |
| FauNDI | CATATG | 2 cut(s) | 409, 1317 |
| Fnu4HI | GCNGC | 1 cut(s) | 1272 |
| FokI | GGATG | 1 cut(s) | 481 |
| Fsp4HI | GCNGC | 1 cut(s) | 1272 |
| FspBI | CTAG | 6 cut(s) | 51, 72, 945, 1026, 1052, 1621 |
| GluI | GCNGC | 1 cut(s) | 1272 |
| Hin1II | CATG | 9 cut(s) | 215, 249, 386, 438, 646, 833, 1194, 1300, 1436 |
| HincII | GTYRAC | 2 cut(s) | 598, 769 |
| HindII | GTYRAC | 2 cut(s) | 598, 769 |
| HindIII | AAGCTT | 2 cut(s) | 453, 1427 |
| HinfI | GANTC | 4 cut(s) | 781, 890, 1103, 1591 |
| HpaI | GTTAAC | 1 cut(s) | 769 |
| HphI | GGTGA | 2 cut(s) | 830, 1162 |
| Hpy166II | GTNNAC | 4 cut(s) | 561, 598, 769, 1495 |
| Hpy188I | TCNGA | 8 cut(s) | 289, 318, 541, 940, 1132, 1335, 1348, 1501 |
| Hpy188III | TCNNGA | 5 cut(s) | 419, 808, 911, 962, 1297 |
| Hpy8I | GTNNAC | 4 cut(s) | 561, 598, 769, 1495 |
| HpyAV | CCTTC | 3 cut(s) | 181, 512, 1134 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 1355, 1564 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 404, 584, 652 |
| HpyF3I | CTNAG | 3 cut(s) | 555, 699, 939 |
| Hsp92II | CATG | 9 cut(s) | 215, 249, 386, 438, 646, 833, 1194, 1300, 1436 |
| KspAI | GTTAAC | 1 cut(s) | 769 |
| Kzo9I | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| LpnPI | CCDG | 6 cut(s) | 123, 204, 264, 432, 645, 1188 |
| Lsp1109I | GCAGC | 1 cut(s) | 1283 |
| LweI | GCATC | 3 cut(s) | 293, 927, 1567 |
| MaeI | CTAG | 6 cut(s) | 51, 72, 945, 1026, 1052, 1621 |
| MaeIII | GTNAC | 4 cut(s) | 638, 694, 818, 1186 |
| MalI | GATC | 5 cut(s) | 18, 106, 312, 1314, 1386 |
| MboI | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| MfeI | CAATTG | 1 cut(s) | 1368 |
| MflI | RGATCY | 2 cut(s) | 16, 1384 |
| MhlI | GDGCHC | 3 cut(s) | 169, 563, 847 |
| Mph1103I | ATGCAT | 1 cut(s) | 920 |
| MroXI | GAANNNNTTC | 1 cut(s) | 122 |
| MseI | TTAA | 9 cut(s) | 393, 426, 768, 788, 879, 972, 1086, 1266, 1518 |
| MslI | CAYNNNNRTG | 2 cut(s) | 556, 660 |
| MunI | CAATTG | 1 cut(s) | 1368 |
| Mva1269I | GAATGC | 1 cut(s) | 920 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 404, 584, 652 |
| NdeI | CATATG | 2 cut(s) | 409, 1317 |
| NdeII | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| NlaIII | CATG | 9 cut(s) | 215, 249, 386, 438, 646, 833, 1194, 1300, 1436 |
| NlaIV | GGNNCC | 1 cut(s) | 1386 |
| NmuCI | GTSAC | 2 cut(s) | 638, 818 |
| NsiI | ATGCAT | 1 cut(s) | 920 |
| NspI | RCATGY | 3 cut(s) | 249, 646, 1194 |
| NspV | TTCGAA | 1 cut(s) | 1160 |
| PagI | TCATGA | 1 cut(s) | 1296 |
| PctI | GAATGC | 1 cut(s) | 920 |
| PdmI | GAANNNNTTC | 1 cut(s) | 122 |
| PfeI | GAWTC | 4 cut(s) | 781, 890, 1103, 1591 |
| PkrI | GCNGC | 1 cut(s) | 1273 |
| PshBI | ATTAAT | 1 cut(s) | 1086 |
| PsiI | TTATAA | 2 cut(s) | 629, 1395 |
| PspN4I | GGNNCC | 1 cut(s) | 1386 |
| PsuI | RGATCY | 2 cut(s) | 16, 1384 |
| RsaI | GTAC | 2 cut(s) | 1214, 1496 |
| RsaNI | GTAC | 2 cut(s) | 1213, 1495 |
| RseI | CAYNNNNRTG | 2 cut(s) | 556, 660 |
| SaqAI | TTAA | 9 cut(s) | 393, 426, 768, 788, 879, 972, 1086, 1266, 1518 |
| SatI | GCNGC | 1 cut(s) | 1272 |
| Sau3AI | GATC | 5 cut(s) | 16, 104, 310, 1312, 1384 |
| SduI | GDGCHC | 3 cut(s) | 169, 563, 847 |
| SfaNI | GCATC | 3 cut(s) | 293, 927, 1567 |
| SfuI | TTCGAA | 1 cut(s) | 1160 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 556, 660 |
| SsiI | CCGC | 1 cut(s) | 653 |
| SspI | AATATT | 3 cut(s) | 757, 793, 1531 |
| SspMI | CTAG | 6 cut(s) | 51, 72, 945, 1026, 1052, 1621 |
| TaaI | ACNGT | 3 cut(s) | 142, 1355, 1564 |
| TaqI | TCGA | 5 cut(s) | 103, 439, 1072, 1160, 1544 |
| TatI | WGTACW | 1 cut(s) | 1494 |
| TfiI | GAWTC | 4 cut(s) | 781, 890, 1103, 1591 |
| Tru1I | TTAA | 9 cut(s) | 393, 426, 768, 788, 879, 972, 1086, 1266, 1518 |
| Tru9I | TTAA | 9 cut(s) | 393, 426, 768, 788, 879, 972, 1086, 1266, 1518 |
| TscAI | CASTG | 2 cut(s) | 563, 568 |
| TseFI | GTSAC | 2 cut(s) | 638, 818 |
| TseI | GCWGC | 1 cut(s) | 1271 |
| Tsp45I | GTSAC | 2 cut(s) | 638, 818 |
| TspDTI | ATGAA | 8 cut(s) | 200, 242, 818, 827, 1285, 1313, 1421, 1553 |
| TspGWI | ACGGA | 1 cut(s) | 314 |
| TspRI | CASTG | 2 cut(s) | 563, 568 |
| VneI | GTGCAC | 1 cut(s) | 559 |
| VspI | ATTAAT | 1 cut(s) | 1086 |
| XapI | RAATTY | 7 cut(s) | 46, 525, 856, 906, 1108, 1225, 1441 |
| XceI | RCATGY | 3 cut(s) | 249, 646, 1194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 122 |
| XspI | CTAG | 6 cut(s) | 51, 72, 945, 1026, 1052, 1621 |
| Zsp2I | ATGCAT | 1 cut(s) | 920 |