BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_tran | PF00005 | 28 - 89 | 1e-09 | ABC transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 842, 899 |
| AclWI | GGATC | 3 cut(s) | 431, 689, 870 |
| AcsI | RAATTY | 6 cut(s) | 57, 94, 137, 183, 482, 836 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 896 |
| AgsI | TTSAA | 3 cut(s) | 26, 209, 385 |
| AhlI | ACTAGT | 1 cut(s) | 337 |
| AjnI | CCWGG | 2 cut(s) | 779, 895 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 265, 297 |
| AluBI | AGCT | 6 cut(s) | 14, 167, 355, 450, 734, 829 |
| AluI | AGCT | 6 cut(s) | 14, 167, 355, 450, 734, 829 |
| Alw26I | GTCTC | 2 cut(s) | 311, 802 |
| AlwI | GGATC | 3 cut(s) | 431, 689, 870 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 698 |
| Ama87I | CYCGRG | 1 cut(s) | 472 |
| AoxI | GGCC | 1 cut(s) | 468 |
| ApeKI | GCWGC | 3 cut(s) | 167, 355, 447 |
| ApoI | RAATTY | 6 cut(s) | 57, 94, 137, 183, 482, 836 |
| AspS9I | GGNCC | 2 cut(s) | 346, 490 |
| AsuC2I | CCSGG | 1 cut(s) | 314 |
| AsuII | TTCGAA | 1 cut(s) | 64 |
| AvaI | CYCGRG | 1 cut(s) | 472 |
| AvaII | GGWCC | 2 cut(s) | 346, 490 |
| BanI | GGYRCC | 2 cut(s) | 842, 899 |
| BbsI | GAAGAC | 1 cut(s) | 593 |
| BbvI | GCAGC | 3 cut(s) | 154, 342, 459 |
| BccI | CCATC | 1 cut(s) | 423 |
| BciT130I | CCWGG | 2 cut(s) | 781, 897 |
| BciVI | GTATCC | 1 cut(s) | 651 |
| BcnI | CCSGG | 1 cut(s) | 314 |
| BcoDI | GTCTC | 2 cut(s) | 311, 802 |
| BcuI | ACTAGT | 1 cut(s) | 337 |
| BfaI | CTAG | 6 cut(s) | 111, 164, 338, 407, 573, 830 |
| BfuI | GTATCC | 1 cut(s) | 651 |
| BisI | GCNGC | 3 cut(s) | 168, 356, 448 |
| BlsI | GCNGC | 3 cut(s) | 169, 357, 449 |
| Bme1390I | CCNGG | 3 cut(s) | 314, 781, 897 |
| Bme18I | GGWCC | 2 cut(s) | 346, 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 472 |
| BmgT120I | GGNCC | 2 cut(s) | 346, 490 |
| BmiI | GGNNCC | 3 cut(s) | 250, 844, 901 |
| BmrFI | CCNGG | 3 cut(s) | 314, 781, 897 |
| BmrI | ACTGGG | 1 cut(s) | 659 |
| BmsI | GCATC | 3 cut(s) | 213, 320, 696 |
| BmuI | ACTGGG | 1 cut(s) | 659 |
| BpiI | GAAGAC | 1 cut(s) | 593 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 317, 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 145 |
| Bpu14I | TTCGAA | 1 cut(s) | 64 |
| BpuEI | CTTGAG | 2 cut(s) | 344, 371 |
| BpuMI | CCSGG | 1 cut(s) | 314 |
| BsaAI | YACGTR | 1 cut(s) | 595 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 896 |
| Bse1I | ACTGG | 2 cut(s) | 252, 654 |
| BseBI | CCWGG | 2 cut(s) | 781, 897 |
| BseGI | GGATG | 1 cut(s) | 434 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 896 |
| BseMII | CTCAG | 3 cut(s) | 74, 159, 674 |
| BseNI | ACTGG | 2 cut(s) | 252, 654 |
| BseXI | GCAGC | 3 cut(s) | 154, 342, 459 |
| BshFI | GGCC | 1 cut(s) | 470 |
| BshNI | GGYRCC | 2 cut(s) | 842, 899 |
| BsiHKCI | CYCGRG | 1 cut(s) | 472 |
| BsiSI | CCGG | 1 cut(s) | 313 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 896 |
| BsmAI | GTCTC | 2 cut(s) | 311, 802 |
| BsmBI | CGTCTC | 1 cut(s) | 311 |
| BsmI | GAATGC | 1 cut(s) | 748 |
| BsnI | GGCC | 1 cut(s) | 470 |
| BsoBI | CYCGRG | 1 cut(s) | 472 |
| Bsp119I | TTCGAA | 1 cut(s) | 64 |
| Bsp143I | GATC | 4 cut(s) | 436, 679, 694, 862 |
| BspANI | GGCC | 1 cut(s) | 470 |
| BspCNI | CTCAG | 3 cut(s) | 75, 158, 675 |
| BspLI | GGNNCC | 3 cut(s) | 250, 844, 901 |
| BspPI | GGATC | 3 cut(s) | 431, 689, 870 |
| BspT104I | TTCGAA | 1 cut(s) | 64 |
| BspT107I | GGYRCC | 2 cut(s) | 842, 899 |
| BsrI | ACTGG | 2 cut(s) | 252, 654 |
| BssMI | GATC | 4 cut(s) | 436, 679, 694, 862 |
| Bst2UI | CCWGG | 2 cut(s) | 781, 897 |
| Bst4CI | ACNGT | 1 cut(s) | 772 |
| Bst6I | CTCTTC | 1 cut(s) | 47 |
| BstBAI | YACGTR | 1 cut(s) | 595 |
| BstBI | TTCGAA | 1 cut(s) | 64 |
| BstDEI | CTNAG | 4 cut(s) | 83, 145, 662, 683 |
| BstF5I | GGATG | 1 cut(s) | 434 |
| BstKTI | GATC | 4 cut(s) | 439, 682, 697, 865 |
| BstMAI | GTCTC | 2 cut(s) | 311, 802 |
| BstMBI | GATC | 4 cut(s) | 436, 679, 694, 862 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 156, 403, 620, 731 |
| BstNI | CCWGG | 2 cut(s) | 781, 897 |
| BstSCI | CCNGG | 3 cut(s) | 312, 779, 895 |
| BstV1I | GCAGC | 3 cut(s) | 154, 342, 459 |
| BstV2I | GAAGAC | 1 cut(s) | 593 |
| BstX2I | RGATCY | 3 cut(s) | 436, 694, 862 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 808 |
| BstYI | RGATCY | 3 cut(s) | 436, 694, 862 |
| BsuI | GTATCC | 1 cut(s) | 651 |
| BsuRI | GGCC | 1 cut(s) | 470 |
| BtsCI | GGATG | 1 cut(s) | 434 |
| BtsIMutI | CAGTG | 2 cut(s) | 605, 647 |
| CaiI | CAGNNNCTG | 1 cut(s) | 698 |
| Cfr13I | GGNCC | 2 cut(s) | 346, 490 |
| CseI | GACGC | 1 cut(s) | 328 |
| CviAII | CATG | 5 cut(s) | 47, 245, 400, 412, 739 |
| DdeI | CTNAG | 4 cut(s) | 83, 145, 662, 683 |
| DpnI | GATC | 4 cut(s) | 438, 681, 696, 864 |
| DpnII | GATC | 4 cut(s) | 436, 679, 694, 862 |
| Eam1104I | CTCTTC | 1 cut(s) | 47 |
| EarI | CTCTTC | 1 cut(s) | 47 |
| Eco47I | GGWCC | 2 cut(s) | 346, 490 |
| Eco88I | CYCGRG | 1 cut(s) | 472 |
| EcoO109I | RGGNCCY | 2 cut(s) | 346, 490 |
| EcoRII | CCWGG | 2 cut(s) | 779, 895 |
| Esp3I | CGTCTC | 1 cut(s) | 311 |
| FaeI | CATG | 5 cut(s) | 50, 248, 403, 415, 742 |
| FatI | CATG | 5 cut(s) | 46, 244, 399, 411, 738 |
| Fnu4HI | GCNGC | 3 cut(s) | 168, 356, 448 |
| FokI | GGATG | 1 cut(s) | 441 |
| Fsp4HI | GCNGC | 3 cut(s) | 168, 356, 448 |
| FspBI | CTAG | 6 cut(s) | 111, 164, 338, 407, 573, 830 |
| GluI | GCNGC | 3 cut(s) | 168, 356, 448 |
| HaeIII | GGCC | 1 cut(s) | 470 |
| HapII | CCGG | 1 cut(s) | 313 |
| HgaI | GACGC | 1 cut(s) | 328 |
| Hin1II | CATG | 5 cut(s) | 50, 248, 403, 415, 742 |
| HincII | GTYRAC | 1 cut(s) | 768 |
| HindII | GTYRAC | 1 cut(s) | 768 |
| HinfI | GANTC | 2 cut(s) | 66, 638 |
| HpaII | CCGG | 1 cut(s) | 313 |
| Hpy166II | GTNNAC | 1 cut(s) | 768 |
| Hpy188I | TCNGA | 6 cut(s) | 107, 306, 526, 538, 679, 684 |
| Hpy188III | TCNNGA | 5 cut(s) | 257, 488, 561, 573, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 768 |
| HpyAV | CCTTC | 2 cut(s) | 170, 648 |
| HpyCH4III | ACNGT | 1 cut(s) | 772 |
| HpyCH4IV | ACGT | 1 cut(s) | 594 |
| HpyCH4V | TGCA | 5 cut(s) | 170, 196, 397, 503, 753 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 156, 403, 620, 731 |
| HpyF3I | CTNAG | 4 cut(s) | 83, 145, 662, 683 |
| HpySE526I | ACGT | 1 cut(s) | 594 |
| Hsp92II | CATG | 5 cut(s) | 50, 248, 403, 415, 742 |
| Kzo9I | GATC | 4 cut(s) | 436, 679, 694, 862 |
| LmnI | GCTCC | 1 cut(s) | 455 |
| Lsp1109I | GCAGC | 3 cut(s) | 154, 342, 459 |
| LweI | GCATC | 3 cut(s) | 213, 320, 696 |
| MaeI | CTAG | 6 cut(s) | 111, 164, 338, 407, 573, 830 |
| MaeII | ACGT | 1 cut(s) | 594 |
| MaeIII | GTNAC | 2 cut(s) | 541, 775 |
| MalI | GATC | 4 cut(s) | 438, 681, 696, 864 |
| MboI | GATC | 4 cut(s) | 436, 679, 694, 862 |
| MboII | GAAGA | 4 cut(s) | 16, 64, 232, 598 |
| MflI | RGATCY | 3 cut(s) | 436, 694, 862 |
| MlyI | GAGTC | 1 cut(s) | 632 |
| MmeI | TCCRAC | 1 cut(s) | 406 |
| MnlI | CCTC | 2 cut(s) | 94, 481 |
| MseI | TTAA | 4 cut(s) | 30, 464, 498, 582 |
| MslI | CAYNNNNRTG | 1 cut(s) | 806 |
| MspI | CCGG | 1 cut(s) | 313 |
| MspR9I | CCNGG | 3 cut(s) | 314, 781, 897 |
| Mva1269I | GAATGC | 1 cut(s) | 748 |
| MvaI | CCWGG | 2 cut(s) | 781, 897 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 156, 403, 620, 731 |
| NciI | CCSGG | 1 cut(s) | 314 |
| NdeII | GATC | 4 cut(s) | 436, 679, 694, 862 |
| NlaIII | CATG | 5 cut(s) | 50, 248, 403, 415, 742 |
| NlaIV | GGNNCC | 3 cut(s) | 250, 844, 901 |
| NmuCI | GTSAC | 1 cut(s) | 541 |
| NspV | TTCGAA | 1 cut(s) | 64 |
| PaeR7I | CTCGAG | 1 cut(s) | 472 |
| PctI | GAATGC | 1 cut(s) | 748 |
| PfeI | GAWTC | 1 cut(s) | 66 |
| PkrI | GCNGC | 3 cut(s) | 169, 357, 449 |
| PleI | GAGTC | 1 cut(s) | 632 |
| PpsI | GAGTC | 1 cut(s) | 632 |
| Ppu21I | YACGTR | 1 cut(s) | 595 |
| PpuMI | RGGWCCY | 2 cut(s) | 346, 490 |
| Psp5II | RGGWCCY | 2 cut(s) | 346, 490 |
| Psp6I | CCWGG | 2 cut(s) | 779, 895 |
| PspGI | CCWGG | 2 cut(s) | 779, 895 |
| PspN4I | GGNNCC | 3 cut(s) | 250, 844, 901 |
| PspPI | GGNCC | 2 cut(s) | 346, 490 |
| PspPPI | RGGWCCY | 2 cut(s) | 346, 490 |
| PspXI | VCTCGAGB | 1 cut(s) | 472 |
| PstNI | CAGNNNCTG | 1 cut(s) | 698 |
| PsuI | RGATCY | 3 cut(s) | 436, 694, 862 |
| RseI | CAYNNNNRTG | 1 cut(s) | 806 |
| SaqAI | TTAA | 4 cut(s) | 30, 464, 498, 582 |
| SatI | GCNGC | 3 cut(s) | 168, 356, 448 |
| Sau3AI | GATC | 4 cut(s) | 436, 679, 694, 862 |
| Sau96I | GGNCC | 2 cut(s) | 346, 490 |
| SchI | GAGTC | 1 cut(s) | 632 |
| ScrFI | CCNGG | 3 cut(s) | 314, 781, 897 |
| SfaNI | GCATC | 3 cut(s) | 213, 320, 696 |
| Sfr274I | CTCGAG | 1 cut(s) | 472 |
| SfuI | TTCGAA | 1 cut(s) | 64 |
| SinI | GGWCC | 2 cut(s) | 346, 490 |
| SlaI | CTCGAG | 1 cut(s) | 472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 806 |
| SmlI | CTYRAG | 3 cut(s) | 323, 350, 472 |
| SmoI | CTYRAG | 3 cut(s) | 323, 350, 472 |
| SpeI | ACTAGT | 1 cut(s) | 337 |
| SspI | AATATT | 2 cut(s) | 205, 276 |
| SspMI | CTAG | 6 cut(s) | 111, 164, 338, 407, 573, 830 |
| StyD4I | CCNGG | 3 cut(s) | 312, 779, 895 |
| TaaI | ACNGT | 1 cut(s) | 772 |
| TaiI | ACGT | 1 cut(s) | 597 |
| TaqI | TCGA | 3 cut(s) | 64, 473, 667 |
| TfiI | GAWTC | 1 cut(s) | 66 |
| Tru1I | TTAA | 4 cut(s) | 30, 464, 498, 582 |
| Tru9I | TTAA | 4 cut(s) | 30, 464, 498, 582 |
| TscAI | CASTG | 2 cut(s) | 612, 654 |
| TseFI | GTSAC | 1 cut(s) | 541 |
| TseI | GCWGC | 3 cut(s) | 167, 355, 447 |
| Tsp45I | GTSAC | 1 cut(s) | 541 |
| TspDTI | ATGAA | 5 cut(s) | 17, 35, 663, 755, 849 |
| TspRI | CASTG | 2 cut(s) | 612, 654 |
| VpaK11BI | GGWCC | 2 cut(s) | 346, 490 |
| XapI | RAATTY | 6 cut(s) | 57, 94, 137, 183, 482, 836 |
| XbaI | TCTAGA | 1 cut(s) | 572 |
| XhoI | CTCGAG | 1 cut(s) | 472 |
| XspI | CTAG | 6 cut(s) | 111, 164, 338, 407, 573, 830 |