Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-BED | PF02892 | 92 - 151 | 5e-07 | BED zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 11 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccII | CGCG | 1 cut(s) | 205 |
| AciI | CCGC | 3 cut(s) | 189, 205, 656 |
| AclWI | GGATC | 1 cut(s) | 863 |
| AcsI | RAATTY | 2 cut(s) | 841, 1270 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 2 cut(s) | 99, 415 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 394, 1040 |
| AflII | CTTAAG | 1 cut(s) | 731 |
| AflIII | ACRYGT | 1 cut(s) | 1182 |
| AjiI | CACGTC | 1 cut(s) | 1183 |
| Alw21I | GWGCWC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| Alw26I | GTCTC | 2 cut(s) | 47, 101 |
| Alw44I | GTGCAC | 2 cut(s) | 210, 360 |
| AlwI | GGATC | 1 cut(s) | 863 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 137 |
| AoxI | GGCC | 1 cut(s) | 1310 |
| ApaLI | GTGCAC | 2 cut(s) | 210, 360 |
| ApeKI | GCWGC | 8 cut(s) | 27, 128, 569, 598, 925, 1016, 1130, 1331 |
| ApoI | RAATTY | 2 cut(s) | 841, 1270 |
| AseI | ATTAAT | 1 cut(s) | 1593 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| AspLEI | GCGC | 3 cut(s) | 383, 820, 1609 |
| AspS9I | GGNCC | 2 cut(s) | 546, 1445 |
| AsuC2I | CCSGG | 2 cut(s) | 112, 1034 |
| AsuHPI | GGTGA | 2 cut(s) | 521, 1426 |
| AvaII | GGWCC | 2 cut(s) | 546, 1445 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 2 cut(s) | 214, 364 |
| BanII | GRGCYC | 1 cut(s) | 1383 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 1622 |
| Bbv12I | GWGCWC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| BbvI | GCAGC | 8 cut(s) | 14, 140, 556, 585, 912, 1003, 1142, 1318 |
| BccI | CCATC | 6 cut(s) | 320, 500, 679, 827, 1260, 1321 |
| BceAI | ACGGC | 2 cut(s) | 586, 831 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 406, 440 |
| BciVI | GTATCC | 1 cut(s) | 391 |
| BcnI | CCSGG | 2 cut(s) | 112, 1034 |
| BcoDI | GTCTC | 2 cut(s) | 47, 101 |
| BfaI | CTAG | 5 cut(s) | 57, 675, 1289, 1536, 1622 |
| BfmI | CTRYAG | 1 cut(s) | 1332 |
| BfoI | RGCGCY | 1 cut(s) | 384 |
| BfrI | CTTAAG | 1 cut(s) | 731 |
| BfuI | GTATCC | 1 cut(s) | 391 |
| BglII | AGATCT | 1 cut(s) | 307 |
| BisI | GCNGC | 9 cut(s) | 28, 129, 189, 570, 599, 926, 1017, 1131, 1332 |
| BlsI | GCNGC | 9 cut(s) | 29, 130, 190, 571, 600, 927, 1018, 1132, 1333 |
| Bme1390I | CCNGG | 2 cut(s) | 112, 1034 |
| Bme18I | GGWCC | 2 cut(s) | 546, 1445 |
| BmgBI | CACGTC | 1 cut(s) | 1183 |
| BmgT120I | GGNCC | 2 cut(s) | 546, 1445 |
| BmrFI | CCNGG | 2 cut(s) | 112, 1034 |
| BpmI | CTGGAG | 3 cut(s) | 150, 168, 518 |
| BpuEI | CTTGAG | 1 cut(s) | 1516 |
| BpuMI | CCSGG | 2 cut(s) | 112, 1034 |
| Bsa29I | ATCGAT | 1 cut(s) | 591 |
| BsaBI | GATNNNNATC | 1 cut(s) | 587 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 2 cut(s) | 111, 1032 |
| BsaWI | WCCGGW | 1 cut(s) | 1411 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 394, 1040 |
| Bse118I | RCCGGY | 1 cut(s) | 1243 |
| Bse1I | ACTGG | 1 cut(s) | 167 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse8I | GATNNNNATC | 1 cut(s) | 587 |
| BseCI | ATCGAT | 1 cut(s) | 591 |
| BseDI | CCNNGG | 2 cut(s) | 111, 1032 |
| BseGI | GGATG | 4 cut(s) | 121, 401, 511, 1332 |
| BseJI | GATNNNNATC | 1 cut(s) | 587 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 394, 1040 |
| BseMII | CTCAG | 4 cut(s) | 96, 129, 186, 260 |
| BseNI | ACTGG | 1 cut(s) | 167 |
| BseRI | GAGGAG | 1 cut(s) | 740 |
| BseSI | GKGCMC | 2 cut(s) | 214, 364 |
| BseXI | GCAGC | 8 cut(s) | 14, 140, 556, 585, 912, 1003, 1142, 1318 |
| Bsh1236I | CGCG | 1 cut(s) | 205 |
| Bsh1285I | CGRYCG | 1 cut(s) | 963 |
| BshFI | GGCC | 1 cut(s) | 1312 |
| BshVI | ATCGAT | 1 cut(s) | 591 |
| BsiEI | CGRYCG | 1 cut(s) | 963 |
| BsiHKAI | GWGCWC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| BsiSI | CCGG | 4 cut(s) | 111, 1034, 1244, 1412 |
| BslFI | GGGAC | 1 cut(s) | 638 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 394, 1040 |
| BsmAI | GTCTC | 2 cut(s) | 47, 101 |
| BsmFI | GGGAC | 1 cut(s) | 638 |
| BsnI | GGCC | 1 cut(s) | 1312 |
| Bso31I | GGTCTC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| Bsp143I | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| BspACI | CCGC | 3 cut(s) | 189, 205, 656 |
| BspANI | GGCC | 1 cut(s) | 1312 |
| BspCNI | CTCAG | 4 cut(s) | 97, 130, 187, 259 |
| BspDI | ATCGAT | 1 cut(s) | 591 |
| BspFNI | CGCG | 1 cut(s) | 205 |
| BspHI | TCATGA | 1 cut(s) | 1564 |
| BspMAI | CTGCAG | 1 cut(s) | 1336 |
| BspPI | GGATC | 1 cut(s) | 863 |
| BspTI | CTTAAG | 1 cut(s) | 731 |
| BspTNI | GGTCTC | 1 cut(s) | 101 |
| BsrFI | RCCGGY | 1 cut(s) | 1243 |
| BsrI | ACTGG | 1 cut(s) | 167 |
| BssAI | RCCGGY | 1 cut(s) | 1243 |
| BssECI | CCNNGG | 2 cut(s) | 111, 1032 |
| BssMI | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| Bst4CI | ACNGT | 3 cut(s) | 413, 557, 685 |
| Bst6I | CTCTTC | 2 cut(s) | 19, 223 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstAFI | CTTAAG | 1 cut(s) | 731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1604 |
| BstC8I | GCNNGC | 4 cut(s) | 360, 371, 567, 1314 |
| BstDEI | CTNAG | 5 cut(s) | 105, 138, 195, 246, 252 |
| BstF5I | GGATG | 4 cut(s) | 121, 401, 511, 1332 |
| BstFNI | CGCG | 1 cut(s) | 205 |
| BstH2I | RGCGCY | 1 cut(s) | 384 |
| BstHHI | GCGC | 3 cut(s) | 383, 820, 1609 |
| BstKTI | GATC | 5 cut(s) | 310, 591, 858, 1255, 1494 |
| BstMAI | GTCTC | 2 cut(s) | 47, 101 |
| BstMBI | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| BstMCI | CGRYCG | 1 cut(s) | 963 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 355, 1556, 1604 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstSCI | CCNGG | 2 cut(s) | 110, 1032 |
| BstSFI | CTRYAG | 1 cut(s) | 1332 |
| BstSLI | GKGCMC | 2 cut(s) | 214, 364 |
| BstUI | CGCG | 1 cut(s) | 205 |
| BstV1I | GCAGC | 8 cut(s) | 14, 140, 556, 585, 912, 1003, 1142, 1318 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1266 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| Bsu15I | ATCGAT | 1 cut(s) | 591 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 391 |
| BsuRI | GGCC | 1 cut(s) | 1312 |
| BsuTUI | ATCGAT | 1 cut(s) | 591 |
| BtrI | CACGTC | 1 cut(s) | 1183 |
| BtsCI | GGATG | 4 cut(s) | 121, 401, 511, 1332 |
| BtsI | GCAGTG | 1 cut(s) | 1545 |
| BtsIMutI | CAGTG | 2 cut(s) | 1230, 1545 |
| Cac8I | GCNNGC | 4 cut(s) | 360, 371, 567, 1314 |
| CaiI | CAGNNNCTG | 1 cut(s) | 137 |
| CciI | TCATGA | 1 cut(s) | 1564 |
| CfoI | GCGC | 3 cut(s) | 383, 820, 1609 |
| Cfr10I | RCCGGY | 1 cut(s) | 1243 |
| Cfr13I | GGNCC | 2 cut(s) | 546, 1445 |
| ClaI | ATCGAT | 1 cut(s) | 591 |
| Csp6I | GTAC | 2 cut(s) | 98, 414 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 966, 1001 |
| CviAII | CATG | 7 cut(s) | 350, 370, 611, 1020, 1058, 1198, 1565 |
| CviQI | GTAC | 2 cut(s) | 98, 414 |
| DdeI | CTNAG | 5 cut(s) | 105, 138, 195, 246, 252 |
| DpnI | GATC | 5 cut(s) | 309, 590, 857, 1254, 1493 |
| DpnII | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| Eam1104I | CTCTTC | 2 cut(s) | 19, 223 |
| EarI | CTCTTC | 2 cut(s) | 19, 223 |
| Ecl136II | GAGCTC | 1 cut(s) | 1381 |
| Eco24I | GRGCYC | 1 cut(s) | 1383 |
| Eco31I | GGTCTC | 1 cut(s) | 101 |
| Eco47I | GGWCC | 2 cut(s) | 546, 1445 |
| Eco53kI | GAGCTC | 1 cut(s) | 1381 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 1381 |
| EcoRI | GAATTC | 1 cut(s) | 1270 |
| EcoT22I | ATGCAT | 2 cut(s) | 371, 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 1383 |
| FaeI | CATG | 7 cut(s) | 353, 373, 614, 1023, 1061, 1201, 1568 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 714, 746 |
| FaqI | GGGAC | 1 cut(s) | 638 |
| FatI | CATG | 7 cut(s) | 349, 369, 610, 1019, 1057, 1197, 1564 |
| FauI | CCCGC | 2 cut(s) | 198, 663 |
| FauNDI | CATATG | 1 cut(s) | 274 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 9 cut(s) | 28, 129, 189, 570, 599, 926, 1017, 1131, 1332 |
| FokI | GGATG | 4 cut(s) | 128, 388, 518, 1339 |
| FriOI | GRGCYC | 1 cut(s) | 1383 |
| Fsp4HI | GCNGC | 9 cut(s) | 28, 129, 189, 570, 599, 926, 1017, 1131, 1332 |
| FspBI | CTAG | 5 cut(s) | 57, 675, 1289, 1536, 1622 |
| GlaI | GCGC | 3 cut(s) | 382, 819, 1608 |
| GluI | GCNGC | 9 cut(s) | 28, 129, 189, 570, 599, 926, 1017, 1131, 1332 |
| GsuI | CTGGAG | 3 cut(s) | 150, 168, 518 |
| HaeII | RGCGCY | 1 cut(s) | 384 |
| HaeIII | GGCC | 1 cut(s) | 1312 |
| HapII | CCGG | 4 cut(s) | 111, 1034, 1244, 1412 |
| HhaI | GCGC | 3 cut(s) | 383, 820, 1609 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 7 cut(s) | 353, 373, 614, 1023, 1061, 1201, 1568 |
| Hin6I | GCGC | 3 cut(s) | 381, 818, 1607 |
| HinP1I | GCGC | 3 cut(s) | 381, 818, 1607 |
| HincII | GTYRAC | 3 cut(s) | 6, 813, 951 |
| HindII | GTYRAC | 3 cut(s) | 6, 813, 951 |
| HinfI | GANTC | 3 cut(s) | 47, 874, 914 |
| HpaII | CCGG | 4 cut(s) | 111, 1034, 1244, 1412 |
| HphI | GGTGA | 2 cut(s) | 521, 1426 |
| Hpy166II | GTNNAC | 6 cut(s) | 6, 212, 362, 546, 813, 951 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 52, 753, 792 |
| Hpy188III | TCNNGA | 6 cut(s) | 323, 535, 1081, 1495, 1565, 1616 |
| Hpy8I | GTNNAC | 6 cut(s) | 6, 212, 362, 546, 813, 951 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 6 cut(s) | 617, 730, 937, 1090, 1211, 1577 |
| HpyCH4III | ACNGT | 3 cut(s) | 413, 557, 685 |
| HpyCH4IV | ACGT | 2 cut(s) | 8, 1182 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 355, 1556, 1604 |
| HpyF3I | CTNAG | 5 cut(s) | 105, 138, 195, 246, 252 |
| HpySE526I | ACGT | 2 cut(s) | 8, 1182 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 7 cut(s) | 353, 373, 614, 1023, 1061, 1201, 1568 |
| HspAI | GCGC | 3 cut(s) | 381, 818, 1607 |
| Kzo9I | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| LmnI | GCTCC | 4 cut(s) | 169, 187, 283, 727 |
| Lsp1109I | GCAGC | 8 cut(s) | 14, 140, 556, 585, 912, 1003, 1142, 1318 |
| MaeI | CTAG | 5 cut(s) | 57, 675, 1289, 1536, 1622 |
| MaeII | ACGT | 2 cut(s) | 8, 1182 |
| MaeIII | GTNAC | 3 cut(s) | 62, 1414, 1513 |
| MalI | GATC | 5 cut(s) | 309, 590, 857, 1254, 1493 |
| MboI | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MhlI | GDGCHC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| MluCI | AATT | 9 cut(s) | 40, 90, 659, 786, 841, 1134, 1211, 1270, 1636 |
| MmeI | TCCRAC | 5 cut(s) | 266, 818, 911, 1283, 1423 |
| Mph1103I | ATGCAT | 2 cut(s) | 371, 375 |
| MroXI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| MseI | TTAA | 8 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593 |
| MslI | CAYNNNNRTG | 4 cut(s) | 277, 1056, 1058, 1091 |
| MspA1I | CMGCKG | 1 cut(s) | 104 |
| MspCI | CTTAAG | 1 cut(s) | 731 |
| MspI | CCGG | 4 cut(s) | 111, 1034, 1244, 1412 |
| MspR9I | CCNGG | 2 cut(s) | 112, 1034 |
| MvnI | CGCG | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 355, 1556, 1604 |
| NciI | CCSGG | 2 cut(s) | 112, 1034 |
| NdeI | CATATG | 1 cut(s) | 274 |
| NdeII | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| NlaIII | CATG | 7 cut(s) | 353, 373, 614, 1023, 1061, 1201, 1568 |
| NmuCI | GTSAC | 2 cut(s) | 1414, 1513 |
| NsiI | ATGCAT | 2 cut(s) | 371, 375 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PaeI | GCATGC | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 1564 |
| PdmI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| PfeI | GAWTC | 3 cut(s) | 47, 874, 914 |
| PkrI | GCNGC | 9 cut(s) | 29, 130, 190, 571, 600, 927, 1018, 1132, 1333 |
| PshBI | ATTAAT | 1 cut(s) | 1593 |
| Psp124BI | GAGCTC | 1 cut(s) | 1383 |
| PspPI | GGNCC | 2 cut(s) | 546, 1445 |
| PstI | CTGCAG | 1 cut(s) | 1336 |
| PstNI | CAGNNNCTG | 1 cut(s) | 137 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| RsaI | GTAC | 2 cut(s) | 99, 415 |
| RsaNI | GTAC | 2 cut(s) | 98, 414 |
| RseI | CAYNNNNRTG | 4 cut(s) | 277, 1056, 1058, 1091 |
| SacI | GAGCTC | 1 cut(s) | 1383 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 8 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593 |
| SatI | GCNGC | 9 cut(s) | 28, 129, 189, 570, 599, 926, 1017, 1131, 1332 |
| Sau3AI | GATC | 5 cut(s) | 307, 588, 855, 1252, 1491 |
| Sau96I | GGNCC | 2 cut(s) | 546, 1445 |
| ScrFI | CCNGG | 2 cut(s) | 112, 1034 |
| SduI | GDGCHC | 5 cut(s) | 214, 288, 364, 422, 1383 |
| SfcI | CTRYAG | 1 cut(s) | 1332 |
| SinI | GGWCC | 2 cut(s) | 546, 1445 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 277, 1056, 1058, 1091 |
| SmlI | CTYRAG | 2 cut(s) | 731, 1495 |
| SmoI | CTYRAG | 2 cut(s) | 731, 1495 |
| SphI | GCATGC | 1 cut(s) | 373 |
| Sse9I | AATT | 9 cut(s) | 40, 90, 659, 786, 841, 1134, 1211, 1270, 1636 |
| SsiI | CCGC | 3 cut(s) | 189, 205, 656 |
| SspI | AATATT | 1 cut(s) | 1482 |
| SspMI | CTAG | 5 cut(s) | 57, 675, 1289, 1536, 1622 |
| SstI | GAGCTC | 1 cut(s) | 1383 |
| StyD4I | CCNGG | 2 cut(s) | 110, 1032 |
| TaaI | ACNGT | 3 cut(s) | 413, 557, 685 |
| TaiI | ACGT | 2 cut(s) | 11, 1185 |
| TaqI | TCGA | 4 cut(s) | 5, 591, 963, 1383 |
| TaqII | GACCGA | 1 cut(s) | 949 |
| TasI | AATT | 9 cut(s) | 40, 90, 659, 786, 841, 1134, 1211, 1270, 1636 |
| TauI | GCSGC | 1 cut(s) | 191 |
| TfiI | GAWTC | 3 cut(s) | 47, 874, 914 |
| Tru1I | TTAA | 8 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593 |
| Tru9I | TTAA | 8 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593 |
| TscAI | CASTG | 2 cut(s) | 1237, 1552 |
| TseFI | GTSAC | 2 cut(s) | 1414, 1513 |
| TseI | GCWGC | 8 cut(s) | 27, 128, 569, 598, 925, 1016, 1130, 1331 |
| Tsp45I | GTSAC | 2 cut(s) | 1414, 1513 |
| TspDTI | ATGAA | 7 cut(s) | 6, 261, 636, 1046, 1358, 1383, 1553 |
| TspRI | CASTG | 2 cut(s) | 1237, 1552 |
| Vha464I | CTTAAG | 1 cut(s) | 731 |
| VneI | GTGCAC | 2 cut(s) | 210, 360 |
| VpaK11BI | GGWCC | 2 cut(s) | 546, 1445 |
| VspI | ATTAAT | 1 cut(s) | 1593 |
| XapI | RAATTY | 2 cut(s) | 841, 1270 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| XspI | CTAG | 5 cut(s) | 57, 675, 1289, 1536, 1622 |
| ZraI | GACGTC | 1 cut(s) | 9 |
| Zsp2I | ATGCAT | 2 cut(s) | 371, 375 |