BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1738, 2414 |
| Acc36I | ACCTGC | 1 cut(s) | 932 |
| Acc65I | GGTACC | 1 cut(s) | 944 |
| AccB1I | GGYRCC | 2 cut(s) | 944, 2716 |
| AccI | GTMKAC | 2 cut(s) | 377, 2418 |
| AciI | CCGC | 3 cut(s) | 817, 1423, 2168 |
| AcoI | YGGCCR | 2 cut(s) | 3, 27 |
| AcsI | RAATTY | 4 cut(s) | 1570, 2046, 2271, 2501 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AdeI | CACNNNGTG | 1 cut(s) | 1549 |
| AfaI | GTAC | 8 cut(s) | 499, 925, 946, 1648, 1957, 2135, 2543, 2645 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1174, 1339, 1924, 2158, 2358 |
| AflII | CTTAAG | 1 cut(s) | 1766 |
| AflIII | ACRYGT | 2 cut(s) | 1324, 1344 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2575 |
| AjiI | CACGTC | 1 cut(s) | 1325 |
| AjnI | CCWGG | 7 cut(s) | 187, 871, 1002, 1186, 1318, 2058, 2151 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2171, 2203 |
| Alw21I | GWGCWC | 1 cut(s) | 2283 |
| Alw26I | GTCTC | 3 cut(s) | 1940, 2423, 2660 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1105, 1466 |
| AoxI | GGCC | 3 cut(s) | 3, 27, 1577 |
| ApeKI | GCWGC | 2 cut(s) | 1559, 1853 |
| ApoI | RAATTY | 4 cut(s) | 1570, 2046, 2271, 2501 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2290, 2322 |
| AseI | ATTAAT | 1 cut(s) | 96 |
| Asp718I | GGTACC | 1 cut(s) | 944 |
| AspA2I | CCTAGG | 1 cut(s) | 2183 |
| AsuC2I | CCSGG | 1 cut(s) | 1709 |
| AvrII | CCTAGG | 1 cut(s) | 2183 |
| BaeGI | GKGCMC | 1 cut(s) | 1392 |
| BalI | TGGCCA | 2 cut(s) | 5, 29 |
| BamHI | GGATCC | 4 cut(s) | 1897, 2083, 2179, 2348 |
| BanI | GGYRCC | 2 cut(s) | 944, 2716 |
| BanII | GRGCYC | 1 cut(s) | 2283 |
| BauI | CACGAG | 3 cut(s) | 525, 2064, 2565 |
| BbsI | GAAGAC | 1 cut(s) | 1736 |
| Bbv12I | GWGCWC | 1 cut(s) | 2283 |
| BbvI | GCAGC | 2 cut(s) | 1571, 1840 |
| BccI | CCATC | 8 cut(s) | 511, 1435, 1538, 1598, 1706, 2261, 2554, 2629 |
| BceAI | ACGGC | 3 cut(s) | 1088, 1110, 2717 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2606, 2640 |
| BciT130I | CCWGG | 7 cut(s) | 189, 873, 1004, 1188, 1320, 2060, 2153 |
| BciVI | GTATCC | 1 cut(s) | 1882 |
| BclI | TGATCA | 2 cut(s) | 1540, 2461 |
| BcnI | CCSGG | 1 cut(s) | 1709 |
| BcoDI | GTCTC | 3 cut(s) | 1940, 2423, 2660 |
| BfaI | CTAG | 4 cut(s) | 2184, 2358, 2490, 2513 |
| BfmI | CTRYAG | 3 cut(s) | 834, 2016, 2592 |
| BfrI | CTTAAG | 1 cut(s) | 1766 |
| BfuAI | ACCTGC | 1 cut(s) | 932 |
| BfuI | GTATCC | 1 cut(s) | 1882 |
| BisI | GCNGC | 3 cut(s) | 1424, 1560, 1854 |
| BlnI | CCTAGG | 1 cut(s) | 2183 |
| BlpI | GCTNAGC | 1 cut(s) | 1472 |
| BlsI | GCNGC | 3 cut(s) | 1425, 1561, 1855 |
| BmcAI | AGTACT | 3 cut(s) | 499, 925, 2135 |
| Bme1390I | CCNGG | 8 cut(s) | 189, 873, 1004, 1188, 1320, 1709, 2060, 2153 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2575 |
| BmgBI | CACGTC | 1 cut(s) | 1325 |
| BmiI | GGNNCC | 8 cut(s) | 946, 1427, 1446, 1899, 2085, 2181, 2350, 2718 |
| BmrFI | CCNGG | 8 cut(s) | 189, 873, 1004, 1188, 1320, 1709, 2060, 2153 |
| BmrI | ACTGGG | 3 cut(s) | 1093, 1395, 1541 |
| BmsI | GCATC | 8 cut(s) | 435, 531, 555, 1046, 1390, 1969, 1991, 2691 |
| BmuI | ACTGGG | 3 cut(s) | 1093, 1395, 1541 |
| BpiI | GAAGAC | 1 cut(s) | 1736 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1789, 1821 |
| BpmI | CTGGAG | 7 cut(s) | 63, 318, 342, 414, 462, 1199, 1525 |
| Bpu10I | CCTNAGC | 2 cut(s) | 972, 2691 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1472 |
| BpuEI | CTTGAG | 1 cut(s) | 1586 |
| BpuMI | CCSGG | 1 cut(s) | 1709 |
| BsaAI | YACGTR | 1 cut(s) | 1646 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1148 |
| BsaJI | CCNNGG | 6 cut(s) | 188, 1187, 1252, 1338, 2183, 2374 |
| BsaWI | WCCGGW | 1 cut(s) | 2584 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 874, 904, 1505, 1535 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1174, 1339, 1924, 2158, 2358 |
| Bse3DI | GCAATG | 3 cut(s) | 763, 966, 2385 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1148 |
| BseBI | CCWGG | 7 cut(s) | 189, 873, 1004, 1188, 1320, 2060, 2153 |
| BseDI | CCNNGG | 6 cut(s) | 188, 1187, 1252, 1338, 2183, 2374 |
| BseGI | GGATG | 8 cut(s) | 346, 805, 881, 1183, 1717, 1982, 1989, 2706 |
| BseJI | GATNNNNATC | 1 cut(s) | 1148 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1174, 1339, 1924, 2158, 2358 |
| BseMI | GCAATG | 3 cut(s) | 763, 966, 2385 |
| BseMII | CTCAG | 4 cut(s) | 774, 1473, 1851, 2070 |
| BseSI | GKGCMC | 1 cut(s) | 1392 |
| BseXI | GCAGC | 2 cut(s) | 1571, 1840 |
| BseYI | CCCAGC | 2 cut(s) | 985, 1033 |
| BshFI | GGCC | 3 cut(s) | 5, 29, 1579 |
| BshNI | GGYRCC | 2 cut(s) | 944, 2716 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2283 |
| BsiSI | CCGG | 2 cut(s) | 1708, 2585 |
| BslFI | GGGAC | 5 cut(s) | 205, 802, 991, 1726, 1769 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1174, 1339, 1924, 2158, 2358 |
| BsmAI | GTCTC | 3 cut(s) | 1940, 2423, 2660 |
| BsmBI | CGTCTC | 1 cut(s) | 2660 |
| BsmFI | GGGAC | 5 cut(s) | 205, 802, 991, 1726, 1769 |
| BsnI | GGCC | 3 cut(s) | 5, 29, 1579 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1392, 2283 |
| Bsp1407I | TGTACA | 1 cut(s) | 1955 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1472 |
| BspACI | CCGC | 3 cut(s) | 817, 1423, 2168 |
| BspANI | GGCC | 3 cut(s) | 5, 29, 1579 |
| BspCNI | CTCAG | 4 cut(s) | 775, 1472, 1852, 2071 |
| BspHI | TCATGA | 4 cut(s) | 1129, 1498, 2275, 2287 |
| BspLI | GGNNCC | 8 cut(s) | 946, 1427, 1446, 1899, 2085, 2181, 2350, 2718 |
| BspMAI | CTGCAG | 1 cut(s) | 2020 |
| BspMI | ACCTGC | 1 cut(s) | 932 |
| BspQI | GCTCTTC | 9 cut(s) | 57, 105, 129, 153, 201, 225, 249, 273, 408 |
| BspT107I | GGYRCC | 2 cut(s) | 944, 2716 |
| BspTI | CTTAAG | 1 cut(s) | 1766 |
| BsrDI | GCAATG | 3 cut(s) | 763, 966, 2385 |
| BsrGI | TGTACA | 1 cut(s) | 1955 |
| BssECI | CCNNGG | 6 cut(s) | 188, 1187, 1252, 1338, 2183, 2374 |
| BssSI | CACGAG | 3 cut(s) | 525, 2064, 2565 |
| BssT1I | CCWWGG | 4 cut(s) | 1252, 1338, 2183, 2374 |
| Bst2BI | CACGAG | 3 cut(s) | 525, 2064, 2565 |
| Bst2UI | CCWGG | 7 cut(s) | 189, 873, 1004, 1188, 1320, 2060, 2153 |
| Bst4CI | ACNGT | 5 cut(s) | 702, 1121, 1249, 2596, 2671 |
| BstAFI | CTTAAG | 1 cut(s) | 1766 |
| BstAUI | TGTACA | 1 cut(s) | 1955 |
| BstBAI | YACGTR | 1 cut(s) | 1646 |
| BstC8I | GCNNGC | 5 cut(s) | 213, 237, 261, 285, 754 |
| BstDEI | CTNAG | 7 cut(s) | 783, 972, 1459, 1472, 1860, 2079, 2691 |
| BstF5I | GGATG | 8 cut(s) | 346, 805, 881, 1183, 1717, 1982, 1989, 2706 |
| BstMAI | GTCTC | 3 cut(s) | 1940, 2423, 2660 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 728, 1423 |
| BstNI | CCWGG | 7 cut(s) | 189, 873, 1004, 1188, 1320, 2060, 2153 |
| BstNSI | RCATGY | 2 cut(s) | 891, 1348 |
| BstSCI | CCNGG | 8 cut(s) | 187, 871, 1002, 1186, 1318, 1707, 2058, 2151 |
| BstSFI | CTRYAG | 3 cut(s) | 834, 2016, 2592 |
| BstSLI | GKGCMC | 1 cut(s) | 1392 |
| BstV1I | GCAGC | 2 cut(s) | 1571, 1840 |
| BstV2I | GAAGAC | 1 cut(s) | 1736 |
| BstX2I | RGATCY | 4 cut(s) | 1897, 2083, 2179, 2348 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2635 |
| BstYI | RGATCY | 4 cut(s) | 1897, 2083, 2179, 2348 |
| BsuI | GTATCC | 1 cut(s) | 1882 |
| BsuRI | GGCC | 3 cut(s) | 5, 29, 1579 |
| BtrI | CACGTC | 1 cut(s) | 1325 |
| BtsCI | GGATG | 8 cut(s) | 346, 805, 881, 1183, 1717, 1982, 1989, 2706 |
| BtsI | GCAGTG | 5 cut(s) | 905, 1057, 2025, 2300, 2622 |
| BveI | ACCTGC | 1 cut(s) | 932 |
| Cac8I | GCNNGC | 5 cut(s) | 213, 237, 261, 285, 754 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1105, 1466 |
| CciI | TCATGA | 4 cut(s) | 1129, 1498, 2275, 2287 |
| Csp6I | GTAC | 8 cut(s) | 498, 924, 945, 1647, 1956, 2134, 2542, 2644 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 30, 2151, 2186 |
| CviQI | GTAC | 8 cut(s) | 498, 924, 945, 1647, 1956, 2134, 2542, 2644 |
| DdeI | CTNAG | 7 cut(s) | 783, 972, 1459, 1472, 1860, 2079, 2691 |
| DraIII | CACNNNGTG | 1 cut(s) | 1549 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1738, 2414 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2575 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1738, 2414 |
| EaeI | YGGCCR | 2 cut(s) | 3, 27 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2575 |
| Ecl136II | GAGCTC | 1 cut(s) | 2281 |
| Eco130I | CCWWGG | 4 cut(s) | 1252, 1338, 2183, 2374 |
| Eco147I | AGGCCT | 1 cut(s) | 1579 |
| Eco24I | GRGCYC | 1 cut(s) | 2283 |
| Eco53kI | GAGCTC | 1 cut(s) | 2281 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| EcoICRI | GAGCTC | 1 cut(s) | 2281 |
| EcoRI | GAATTC | 2 cut(s) | 2046, 2271 |
| EcoRII | CCWGG | 7 cut(s) | 187, 871, 1002, 1186, 1318, 2058, 2151 |
| EcoT14I | CCWWGG | 4 cut(s) | 1252, 1338, 2183, 2374 |
| EcoT22I | ATGCAT | 1 cut(s) | 1984 |
| EcoT38I | GRGCYC | 1 cut(s) | 2283 |
| ErhI | CCWWGG | 4 cut(s) | 1252, 1338, 2183, 2374 |
| Esp3I | CGTCTC | 1 cut(s) | 2660 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1548, 1580 |
| FaqI | GGGAC | 5 cut(s) | 205, 802, 991, 1726, 1769 |
| FauNDI | CATATG | 1 cut(s) | 1173 |
| FbaI | TGATCA | 2 cut(s) | 1540, 2461 |
| FblI | GTMKAC | 2 cut(s) | 377, 2418 |
| Fnu4HI | GCNGC | 3 cut(s) | 1424, 1560, 1854 |
| FokI | GGATG | 8 cut(s) | 353, 792, 888, 1170, 1724, 1969, 1976, 2713 |
| FriOI | GRGCYC | 1 cut(s) | 2283 |
| Fsp4HI | GCNGC | 3 cut(s) | 1424, 1560, 1854 |
| FspBI | CTAG | 4 cut(s) | 2184, 2358, 2490, 2513 |
| GluI | GCNGC | 3 cut(s) | 1424, 1560, 1854 |
| GsaI | CCCAGC | 2 cut(s) | 989, 1037 |
| GsuI | CTGGAG | 7 cut(s) | 63, 318, 342, 414, 462, 1199, 1525 |
| HaeIII | GGCC | 3 cut(s) | 5, 29, 1579 |
| HapII | CCGG | 2 cut(s) | 1708, 2585 |
| HindIII | AAGCTT | 1 cut(s) | 2198 |
| HpaII | CCGG | 2 cut(s) | 1708, 2585 |
| Hpy166II | GTNNAC | 5 cut(s) | 378, 484, 1350, 2419, 2497 |
| Hpy188I | TCNGA | 8 cut(s) | 1462, 1738, 1861, 1897, 2056, 2455, 2605, 2741 |
| Hpy8I | GTNNAC | 5 cut(s) | 378, 484, 1350, 2419, 2497 |
| HpyAV | CCTTC | 3 cut(s) | 1505, 2035, 2330 |
| HpyCH4III | ACNGT | 5 cut(s) | 702, 1121, 1249, 2596, 2671 |
| HpyCH4IV | ACGT | 2 cut(s) | 1324, 1645 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 728, 1423 |
| HpyF3I | CTNAG | 7 cut(s) | 783, 972, 1459, 1472, 1860, 2079, 2691 |
| HpySE526I | ACGT | 2 cut(s) | 1324, 1645 |
| KpnI | GGTACC | 1 cut(s) | 948 |
| Ksp22I | TGATCA | 2 cut(s) | 1540, 2461 |
| LguI | GCTCTTC | 9 cut(s) | 57, 105, 129, 153, 201, 225, 249, 273, 408 |
| LmnI | GCTCC | 7 cut(s) | 58, 844, 1431, 1762, 1797, 2245, 2455 |
| Lsp1109I | GCAGC | 2 cut(s) | 1571, 1840 |
| LweI | GCATC | 8 cut(s) | 435, 531, 555, 1046, 1390, 1969, 1991, 2691 |
| MaeI | CTAG | 4 cut(s) | 2184, 2358, 2490, 2513 |
| MaeII | ACGT | 2 cut(s) | 1324, 1645 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MflI | RGATCY | 4 cut(s) | 1897, 2083, 2179, 2348 |
| MhlI | GDGCHC | 2 cut(s) | 1392, 2283 |
| MlsI | TGGCCA | 2 cut(s) | 5, 29 |
| MluNI | TGGCCA | 2 cut(s) | 5, 29 |
| MlyI | GAGTC | 6 cut(s) | 877, 1451, 1748, 1942, 2394, 2502 |
| MmeI | TCCRAC | 4 cut(s) | 2010, 2267, 2376, 2433 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 29 |
| Mph1103I | ATGCAT | 1 cut(s) | 1984 |
| MscI | TGGCCA | 2 cut(s) | 5, 29 |
| MseI | TTAA | 8 cut(s) | 96, 435, 1227, 1296, 1431, 1574, 1767, 1865 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 29 |
| MspA1I | CMGCKG | 1 cut(s) | 2168 |
| MspCI | CTTAAG | 1 cut(s) | 1766 |
| MspI | CCGG | 2 cut(s) | 1708, 2585 |
| MspR9I | CCNGG | 8 cut(s) | 189, 873, 1004, 1188, 1320, 1709, 2060, 2153 |
| MunI | CAATTG | 1 cut(s) | 384 |
| MvaI | CCWGG | 7 cut(s) | 189, 873, 1004, 1188, 1320, 2060, 2153 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 728, 1423 |
| NciI | CCSGG | 1 cut(s) | 1709 |
| NdeI | CATATG | 1 cut(s) | 1173 |
| NlaIV | GGNNCC | 8 cut(s) | 946, 1427, 1446, 1899, 2085, 2181, 2350, 2718 |
| NmuCI | GTSAC | 8 cut(s) | 142, 166, 310, 367, 469, 694, 2020, 2567 |
| NsiI | ATGCAT | 1 cut(s) | 1984 |
| NspI | RCATGY | 2 cut(s) | 891, 1348 |
| PagI | TCATGA | 4 cut(s) | 1129, 1498, 2275, 2287 |
| PceI | AGGCCT | 1 cut(s) | 1579 |
| PciI | ACATGT | 1 cut(s) | 1344 |
| PciSI | GCTCTTC | 9 cut(s) | 57, 105, 129, 153, 201, 225, 249, 273, 408 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1078 |
| PfeI | GAWTC | 5 cut(s) | 1012, 1210, 1463, 2369, 2606 |
| PflFI | GACNNNGTC | 1 cut(s) | 373 |
| PfoI | TCCNGGA | 2 cut(s) | 871, 1707 |
| PkrI | GCNGC | 3 cut(s) | 1425, 1561, 1855 |
| PleI | GAGTC | 6 cut(s) | 876, 1451, 1747, 1942, 2394, 2501 |
| PpsI | GAGTC | 6 cut(s) | 876, 1451, 1747, 1942, 2394, 2501 |
| Ppu21I | YACGTR | 1 cut(s) | 1646 |
| PscI | ACATGT | 1 cut(s) | 1344 |
| PshBI | ATTAAT | 1 cut(s) | 96 |
| Psp124BI | GAGCTC | 1 cut(s) | 2283 |
| Psp6I | CCWGG | 7 cut(s) | 187, 871, 1002, 1186, 1318, 2058, 2151 |
| PspFI | CCCAGC | 2 cut(s) | 985, 1033 |
| PspGI | CCWGG | 7 cut(s) | 187, 871, 1002, 1186, 1318, 2058, 2151 |
| PspN4I | GGNNCC | 8 cut(s) | 946, 1427, 1446, 1899, 2085, 2181, 2350, 2718 |
| PstI | CTGCAG | 1 cut(s) | 2020 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1105, 1466 |
| PsuI | RGATCY | 4 cut(s) | 1897, 2083, 2179, 2348 |
| PsyI | GACNNNGTC | 1 cut(s) | 373 |
| RsaI | GTAC | 8 cut(s) | 499, 925, 946, 1648, 1957, 2135, 2543, 2645 |
| RsaNI | GTAC | 8 cut(s) | 498, 924, 945, 1647, 1956, 2134, 2542, 2644 |
| SacI | GAGCTC | 1 cut(s) | 2283 |
| SapI | GCTCTTC | 9 cut(s) | 57, 105, 129, 153, 201, 225, 249, 273, 408 |
| SaqAI | TTAA | 8 cut(s) | 96, 435, 1227, 1296, 1431, 1574, 1767, 1865 |
| SatI | GCNGC | 3 cut(s) | 1424, 1560, 1854 |
| ScaI | AGTACT | 3 cut(s) | 499, 925, 2135 |
| SchI | GAGTC | 6 cut(s) | 877, 1451, 1748, 1942, 2394, 2502 |
| ScrFI | CCNGG | 8 cut(s) | 189, 873, 1004, 1188, 1320, 1709, 2060, 2153 |
| SduI | GDGCHC | 2 cut(s) | 1392, 2283 |
| SfaNI | GCATC | 8 cut(s) | 435, 531, 555, 1046, 1390, 1969, 1991, 2691 |
| SfcI | CTRYAG | 3 cut(s) | 834, 2016, 2592 |
| SmlI | CTYRAG | 2 cut(s) | 1565, 1766 |
| SmoI | CTYRAG | 2 cut(s) | 1565, 1766 |
| SseBI | AGGCCT | 1 cut(s) | 1579 |
| SsiI | CCGC | 3 cut(s) | 817, 1423, 2168 |
| SspI | AATATT | 1 cut(s) | 1660 |
| SspMI | CTAG | 4 cut(s) | 2184, 2358, 2490, 2513 |
| SstI | GAGCTC | 1 cut(s) | 2283 |
| StuI | AGGCCT | 1 cut(s) | 1579 |
| StyD4I | CCNGG | 8 cut(s) | 187, 871, 1002, 1186, 1318, 1707, 2058, 2151 |
| StyI | CCWWGG | 4 cut(s) | 1252, 1338, 2183, 2374 |
| TaaI | ACNGT | 5 cut(s) | 702, 1121, 1249, 2596, 2671 |
| TaiI | ACGT | 2 cut(s) | 1327, 1648 |
| TaqI | TCGA | 3 cut(s) | 156, 597, 2616 |
| TatI | WGTACW | 5 cut(s) | 497, 923, 1955, 2133, 2643 |
| TauI | GCSGC | 1 cut(s) | 1426 |
| TfiI | GAWTC | 5 cut(s) | 1012, 1210, 1463, 2369, 2606 |
| Tru1I | TTAA | 8 cut(s) | 96, 435, 1227, 1296, 1431, 1574, 1767, 1865 |
| Tru9I | TTAA | 8 cut(s) | 96, 435, 1227, 1296, 1431, 1574, 1767, 1865 |
| TseFI | GTSAC | 8 cut(s) | 142, 166, 310, 367, 469, 694, 2020, 2567 |
| TseI | GCWGC | 2 cut(s) | 1559, 1853 |
| Tsp45I | GTSAC | 8 cut(s) | 142, 166, 310, 367, 469, 694, 2020, 2567 |
| TspGWI | ACGGA | 1 cut(s) | 2412 |
| Tth111I | GACNNNGTC | 1 cut(s) | 373 |
| Vha464I | CTTAAG | 1 cut(s) | 1766 |
| VspI | ATTAAT | 1 cut(s) | 96 |
| XapI | RAATTY | 4 cut(s) | 1570, 2046, 2271, 2501 |
| XceI | RCATGY | 2 cut(s) | 891, 1348 |
| XmaJI | CCTAGG | 1 cut(s) | 2183 |
| XmiI | GTMKAC | 2 cut(s) | 377, 2418 |
| XspI | CTAG | 4 cut(s) | 2184, 2358, 2490, 2513 |
| ZrmI | AGTACT | 3 cut(s) | 499, 925, 2135 |
| Zsp2I | ATGCAT | 1 cut(s) | 1984 |