Rroxscaffold_6G00389930

Zinc finger BED domain-containing protein RICESLEEPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000008
Physical Location & Seq
Reverse (-)
4164073 .. 4168044
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389930.1

Sequence Viewer

Length: 552 bp
ATGGAAGACAGTTTGGATGCAACTGCAACACCAACTGATGGCACTGGTAGTAGCATCGGAACTACACCAGCAAGCACAACATCTGCTATTGTATCAGGAACTGCACAACTTCAAGTTGTTCAATCTGCTGCTGATGGTCCTTCAAGTCAACTTCCTCTTGGTGATGTTGGACACACGAGAAAGAACAAGAGCATTGCTTGGGATCATTTCACCAAGCTTCTGAATGCTGATGGCACGAAGATGGAAAAGCCTCGAGCCAAGTGCAATTACTGTCCACAAACATACCTTGTGCACTCGAAGTCAAATGGGACTACAAGCATGAGGGACCACATGCTCTATCAATGTAAGAAGTGTCCTCTCTACCTCCCTTCAAAAAAACAGAAGTTCCTAGCATTTGATAATGACGAAAATGGTGCATACCTGAAAGCTTTTGGTTTTGATATTGATGTTTCTAGGATTGCATGTGCTAGGATGGTTATTATGGATGAACTTCCATTTAGTTTCGTGGAGAGACAAGGGTTTATAGATTTCATGAGGGTAACTCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

183

Amino Acids

20.07

Weight (kDa)

7.63

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42170 AT3G42170
fragaria_vesca FvH4_1g02061 FvH4_1g02621 FvH4_1g02621 FvH4_1g02621 FvH4_1g02621 FvH4_1g02623 FvH4_1g09251 FvH4_1g11501 FvH4_1g17901 FvH4_1g21452 FvH4_1g22352 FvH4_1g25741 FvH4_1g29581 FvH4_1g29751 FvH4_1g29803 FvH4_2g00811 FvH4_2g02561 FvH4_2g03380 FvH4_2g03790 FvH4_2g05021 FvH4_2g05022 FvH4_2g07132 FvH4_2g15101 FvH4_2g18091 FvH4_2g19861 FvH4_2g20291 FvH4_2g23222 FvH4_2g25620 FvH4_2g26901 FvH4_2g26902 FvH4_3g03101 FvH4_3g04271 FvH4_3g04521 FvH4_3g17721 FvH4_3g17721 FvH4_3g17721 FvH4_3g17721 FvH4_3g17721 FvH4_3g17721 FvH4_3g17721 FvH4_3g17731 FvH4_3g19351 FvH4_3g22571 FvH4_3g23481 FvH4_3g26821 FvH4_3g30911 FvH4_3g30912 FvH4_3g31241 FvH4_3g31251 FvH4_3g32082 FvH4_3g32553 FvH4_3g32841 FvH4_3g41491 FvH4_4g01851 FvH4_4g06652 FvH4_4g06653 FvH4_4g06882 FvH4_4g07681 FvH4_4g07811 FvH4_4g08573 FvH4_4g08764 FvH4_4g08801 FvH4_4g08852 FvH4_4g09691 FvH4_4g10393 FvH4_4g10394 FvH4_4g10395 FvH4_4g15672 FvH4_4g16142 FvH4_4g16143 FvH4_4g16161 FvH4_4g16162 FvH4_4g17191 FvH4_4g20924 FvH4_4g20925 FvH4_4g20926 FvH4_4g20927 FvH4_4g20928 FvH4_4g20953 FvH4_4g20953 FvH4_4g21073 FvH4_4g21074 FvH4_4g22681 FvH4_4g25011 FvH4_4g28251 FvH4_4g37181 FvH4_5g12282 FvH4_5g12381 FvH4_5g14451 FvH4_5g23881 FvH4_5g24030 FvH4_5g31254 FvH4_5g32181 FvH4_5g32331 FvH4_5g34031 FvH4_5g36131 FvH4_6g01281 FvH4_6g02024 FvH4_6g04831 FvH4_6g07551 FvH4_6g11401 FvH4_6g16421 FvH4_6g17101 FvH4_6g19531 FvH4_6g20201 FvH4_6g22871 FvH4_6g25073 FvH4_6g28381 FvH4_6g28382 FvH4_6g29441 FvH4_6g29881 FvH4_6g30963 FvH4_6g32751 FvH4_6g33161 FvH4_6g37871 FvH4_6g37871 FvH4_6g37871 FvH4_6g37871 FvH4_6g47670 FvH4_6g52721 FvH4_7g01411 FvH4_7g01741 FvH4_7g02711 FvH4_7g03641 FvH4_7g06671 FvH4_7g12360 FvH4_7g13621 FvH4_7g14271 FvH4_7g17881 FvH4_7g20430 FvH4_7g20440 FvH4_c5g00011
malus_domestica MD00G1006400.v1.1 MD00G1092100.v1.1 MD01G1093100.v1.1 MD01G1147100.v1.1 MD01G1204100.v1.1 MD02G1026500.v1.1 MD03G1191800.v1.1 MD03G1206000.v1.1 MD04G1008400.v1.1 MD04G1235100.v1.1 MD05G1210500.v1.1 MD08G1116600.v1.1 MD08G1123700.v1.1 MD09G1155300.v1.1 MD10G1273100.v1.1 MD11G1014000.v1.1 MD11G1111300.v1.1 MD11G1270200.v1.1 MD12G1010700.v1.1 MD12G1010800.v1.1 MD12G1051900.v1.1 MD13G1146900.v1.1 MD13G1147000.v1.1 MD13G1147100.v1.1 MD14G1007800.v1.1 MD15G1315200.v1.1 MD17G1141400.v1.1 MD17G1214100.v1.1
prunus_persica Prupe.1G110300_v2.0.a1 Prupe.1G110400_v2.0.a1 Prupe.1G110500_v2.0.a1 Prupe.1G110600_v2.0.a1 Prupe.1G110600_v2.0.a1 Prupe.2G084000_v2.0.a1 Prupe.3G090000_v2.0.a1 Prupe.3G090000_v2.0.a1 Prupe.3G090000_v2.0.a1 Prupe.3G170500_v2.0.a1 Prupe.4G156200_v2.0.a1 Prupe.4G190100_v2.0.a1 Prupe.5G026900_v2.0.a1 Prupe.5G142000_v2.0.a1 Prupe.6G144800_v2.0.a1 Prupe.7G248500_v2.0.a1 Prupe.7G248500_v2.0.a1 Prupe.7G248500_v2.0.a1 Prupe.8G039800_v2.0.a1 Prupe.8G075500_v2.0.a1
pyrus_communis pycom01g06420 pycom02g02180 pycom03g19610 pycom03g19730 pycom03g19760 pycom03g21910 pycom04g06240 pycom04g10180 pycom05g06980 pycom05g09710 pycom05g15650 pycom05g18240 pycom05g24010 pycom07g01460 pycom07g18190 pycom08g02810 pycom09g02480 pycom09g07870 pycom11g23870 pycom11g23880 pycom12423g00170 pycom12g13400 pycom13g00940 pycom13g12650 pycom13g13060 pycom13g21570 pycom14g00620 pycom14g06440 pycom15g15000 pycom15g23360 pycom15g25790 pycom17g11890 pycom17g21930 pycom420g00740 pycom556g00030
rosa_chinensis RchiOBHm_Chr1g0315421 RchiOBHm_Chr1g0315671 RchiOBHm_Chr1g0330231 RchiOBHm_Chr1g0331491 RchiOBHm_Chr1g0341811 RchiOBHm_Chr1g0347421 RchiOBHm_Chr1g0351191 RchiOBHm_Chr1g0351201 RchiOBHm_Chr1g0351711 RchiOBHm_Chr1g0367431 RchiOBHm_Chr2g0087641 RchiOBHm_Chr2g0087651 RchiOBHm_Chr2g0103671 RchiOBHm_Chr2g0106891 RchiOBHm_Chr2g0112651 RchiOBHm_Chr2g0116731 RchiOBHm_Chr2g0127401 RchiOBHm_Chr2g0134951 RchiOBHm_Chr2g0138151 RchiOBHm_Chr2g0138901 RchiOBHm_Chr2g0141501 RchiOBHm_Chr2g0142391 RchiOBHm_Chr2g0147581 RchiOBHm_Chr2g0151021 RchiOBHm_Chr2g0158751 RchiOBHm_Chr2g0170381 RchiOBHm_Chr3g0467291 RchiOBHm_Chr3g0467411 RchiOBHm_Chr3g0468991 RchiOBHm_Chr3g0477141 RchiOBHm_Chr3g0477151 RchiOBHm_Chr3g0478931 RchiOBHm_Chr3g0481451 RchiOBHm_Chr3g0483331 RchiOBHm_Chr3g0483341 RchiOBHm_Chr3g0484001 RchiOBHm_Chr3g0496331 RchiOBHm_Chr3g0496341 RchiOBHm_Chr4g0384931 RchiOBHm_Chr4g0391261 RchiOBHm_Chr4g0391921 RchiOBHm_Chr4g0396361 RchiOBHm_Chr4g0396801 RchiOBHm_Chr4g0410361 RchiOBHm_Chr4g0423601 RchiOBHm_Chr4g0426371 RchiOBHm_Chr4g0426381 RchiOBHm_Chr4g0426401 RchiOBHm_Chr4g0426451 RchiOBHm_Chr4g0426461 RchiOBHm_Chr4g0427661 RchiOBHm_Chr4g0438211 RchiOBHm_Chr5g0006241 RchiOBHm_Chr5g0007101 RchiOBHm_Chr5g0016281 RchiOBHm_Chr5g0023961 RchiOBHm_Chr5g0029491 RchiOBHm_Chr5g0031061 RchiOBHm_Chr5g0031071 RchiOBHm_Chr5g0035131 RchiOBHm_Chr5g0038441 RchiOBHm_Chr5g0048331 RchiOBHm_Chr5g0050021 RchiOBHm_Chr5g0052001 RchiOBHm_Chr5g0056991 RchiOBHm_Chr5g0059011 RchiOBHm_Chr5g0071411 RchiOBHm_Chr6g0251881 RchiOBHm_Chr6g0258601 RchiOBHm_Chr6g0262381 RchiOBHm_Chr6g0268731 RchiOBHm_Chr6g0283851 RchiOBHm_Chr6g0283861 RchiOBHm_Chr6g0286671 RchiOBHm_Chr6g0289081 RchiOBHm_Chr6g0295191 RchiOBHm_Chr6g0311351 RchiOBHm_Chr7g0187091 RchiOBHm_Chr7g0191901 RchiOBHm_Chr7g0202411 RchiOBHm_Chr7g0205391 RchiOBHm_Chr7g0229391 RchiOBHm_Chr7g0235371 RchiOBHm_Chr7g0235391 RchiOBHm_Chr7g0238051 RchiOBHm_Chr7g0242101
rosa_laevigata RLG00000003142 RLG00000006071 RLG00000015775 RLG00000015778 RLG00000015889 RLG00000020524 RLG00000029898 RLG00000033173
rosa_multiflora Rmu_co7976828.1_g000001 Rmu_co8017292.1_g000001 Rmu_co8164982.1_g000001 Rmu_co8260805.1_g000001 Rmu_co8369185.1_g000001 Rmu_co8469137.1_g000002 Rmu_sc0000010.1_g000005 Rmu_sc0000046.1_g000025 Rmu_sc0000147.1_g000022 Rmu_sc0000166.1_g000035 Rmu_sc0000208.1_g000025 Rmu_sc0000321.1_g000011 Rmu_sc0000340.1_g000039 Rmu_sc0000367.1_g000105 Rmu_sc0000399.1_g000030 Rmu_sc0000458.1_g000014 Rmu_sc0000508.1_g000009 Rmu_sc0000543.1_g000043 Rmu_sc0000569.1_g000015 Rmu_sc0000569.1_g000017 Rmu_sc0000573.1_g000003 Rmu_sc0000695.1_g000002 Rmu_sc0000698.1_g000140 Rmu_sc0000701.1_g000013 Rmu_sc0000776.1_g000049 Rmu_sc0000779.1_g000021 Rmu_sc0000800.1_g000033 Rmu_sc0000808.1_g000029 Rmu_sc0000829.1_g000014 Rmu_sc0000935.1_g000005 Rmu_sc0000939.1_g000030 Rmu_sc0000940.1_g000012 Rmu_sc0000974.1_g000005 Rmu_sc0000986.1_g000036 Rmu_sc0001190.1_g000045 Rmu_sc0001211.1_g000049 Rmu_sc0001362.1_g000018 Rmu_sc0001513.1_g000008 Rmu_sc0001548.1_g000024 Rmu_sc0001556.1_g000002 Rmu_sc0001566.1_g000003 Rmu_sc0001601.1_g000009 Rmu_sc0001619.1_g000003 Rmu_sc0001705.1_g000013 Rmu_sc0001708.1_g000041 Rmu_sc0001735.1_g000005 Rmu_sc0001758.1_g000040 Rmu_sc0001832.1_g000002 Rmu_sc0001843.1_g000003 Rmu_sc0001939.1_g000017 Rmu_sc0001939.1_g000018 Rmu_sc0002014.1_g000013 Rmu_sc0002095.1_g000010 Rmu_sc0002340.1_g000016 Rmu_sc0002398.1_g000041 Rmu_sc0002434.1_g000014 Rmu_sc0002480.1_g000014 Rmu_sc0002515.1_g000013 Rmu_sc0002521.1_g000028 Rmu_sc0002525.1_g000002 Rmu_sc0002705.1_g000034 Rmu_sc0002709.1_g000010 Rmu_sc0002745.1_g000007 Rmu_sc0002750.1_g000010 Rmu_sc0002960.1_g000006 Rmu_sc0002960.1_g000007 Rmu_sc0003190.1_g000001 Rmu_sc0003229.1_g000004 Rmu_sc0003239.1_g000006 Rmu_sc0003321.1_g000018 Rmu_sc0003362.1_g000003 Rmu_sc0003708.1_g000019 Rmu_sc0003730.1_g000021 Rmu_sc0004076.1_g000025 Rmu_sc0004076.1_g000026 Rmu_sc0004100.1_g000006 Rmu_sc0004300.1_g000006 Rmu_sc0004325.1_g000001 Rmu_sc0004339.1_g000024 Rmu_sc0004342.1_g000012 Rmu_sc0004483.1_g000023 Rmu_sc0004657.1_g000079 Rmu_sc0004911.1_g000002 Rmu_sc0004918.1_g000001 Rmu_sc0004999.1_g000007 Rmu_sc0005320.1_g000002 Rmu_sc0005322.1_g000014 Rmu_sc0005445.1_g000003 Rmu_sc0005500.1_g000018 Rmu_sc0005584.1_g000026 Rmu_sc0005593.1_g000011 Rmu_sc0005614.1_g000001 Rmu_sc0005745.1_g000016 Rmu_sc0005770.1_g000010 Rmu_sc0005911.1_g000002 Rmu_sc0006009.1_g000009 Rmu_sc0006009.1_g000012 Rmu_sc0006094.1_g000007 Rmu_sc0006323.1_g000026 Rmu_sc0006558.1_g000017 Rmu_sc0006570.1_g000012 Rmu_sc0006595.1_g000019 Rmu_sc0006669.1_g000003 Rmu_sc0006827.1_g000029 Rmu_sc0006890.1_g000001 Rmu_sc0007356.1_g000011 Rmu_sc0007942.1_g000004 Rmu_sc0007942.1_g000005 Rmu_sc0008074.1_g000015 Rmu_sc0008281.1_g000005 Rmu_sc0008373.1_g000003 Rmu_sc0008387.1_g000003 Rmu_sc0008452.1_g000002 Rmu_sc0008535.1_g000013 Rmu_sc0008721.1_g000011 Rmu_sc0008770.1_g000017 Rmu_sc0009072.1_g000001 Rmu_sc0009180.1_g000004 Rmu_sc0009719.1_g000007 Rmu_sc0009768.1_g000002 Rmu_sc0009830.1_g000008 Rmu_sc0010065.1_g000018 Rmu_sc0010079.1_g000001 Rmu_sc0010610.1_g000005 Rmu_sc0010616.1_g000012 Rmu_sc0011101.1_g000002 Rmu_sc0011437.1_g000001 Rmu_sc0011775.1_g000003 Rmu_sc0012167.1_g000002 Rmu_sc0012351.1_g000011 Rmu_sc0013097.1_g000004 Rmu_sc0014676.1_g000005 Rmu_sc0015160.1_g000003 Rmu_sc0015472.1_g000001 Rmu_sc0016247.1_g000001 Rmu_sc0017177.1_g000002 Rmu_sc0018387.1_g000003 Rmu_sc0023531.1_g000002 Rmu_sc0024307.1_g000001 Rmu_sc0026512.1_g000001 Rmu_sc0027513.1_g000001 Rmu_sc0027587.1_g000002 Rmu_sc0036315.1_g000001 Rmu_sc0039910.1_g000001 Rmu_sc0040729.1_g000001 Rmu_ssc0000018.1_g000041 Rmu_ssc0000128.1_g000008 Rmu_ssc0000134.1_g000012 Rmu_ssc0000151.1_g000014 Rmu_ssc0000182.1_g000019 Rmu_ssc0000255.1_g000019 Rmu_ssc0000260.1_g000004 Rmu_ssc0000261.1_g000005 Rmu_ssc0000377.1_g000004 Rmu_ssc0000448.1_g000011
rosa_roxburghii Rroxscaffold_164G00435950 Rroxscaffold_175G00432550 Rroxscaffold_1G00007330 Rroxscaffold_1G00024120 Rroxscaffold_1G00030160 Rroxscaffold_1G00031410 Rroxscaffold_1G00041150 Rroxscaffold_1G00046330 Rroxscaffold_1G00050470 Rroxscaffold_1G00050840 Rroxscaffold_1G00051780 Rroxscaffold_2G00083360 Rroxscaffold_2G00090550 Rroxscaffold_2G00096760 Rroxscaffold_2G00109620 Rroxscaffold_2G00123950 Rroxscaffold_2G00134170 Rroxscaffold_2G00149830 Rroxscaffold_2G00153320 Rroxscaffold_2G00153340 Rroxscaffold_3G00221100 Rroxscaffold_3G00225540 Rroxscaffold_3G00232450 Rroxscaffold_3G00242110 Rroxscaffold_3G00258860 Rroxscaffold_3G00274290 Rroxscaffold_4G00281170 Rroxscaffold_4G00288260 Rroxscaffold_4G00306880 Rroxscaffold_4G00311620 Rroxscaffold_4G00314860 Rroxscaffold_4G00318310 Rroxscaffold_4G00322680 Rroxscaffold_4G00324330 Rroxscaffold_4G00330160 Rroxscaffold_4G00331280 Rroxscaffold_5G00340050 Rroxscaffold_5G00367440 Rroxscaffold_5G00368370 Rroxscaffold_5G00368380 Rroxscaffold_5G00368410 Rroxscaffold_5G00368420 Rroxscaffold_5G00368470 Rroxscaffold_5G00370990 Rroxscaffold_5G00371060 Rroxscaffold_6G00389930 Rroxscaffold_6G00392620 Rroxscaffold_6G00396380 Rroxscaffold_6G00396790 Rroxscaffold_6G00397200 Rroxscaffold_6G00399100 Rroxscaffold_6G00403440 Rroxscaffold_6G00403820 Rroxscaffold_6G00404450 Rroxscaffold_6G00405810 Rroxscaffold_7G00164650 Rroxscaffold_7G00192640 Rroxscaffold_7G00194500 Rroxscaffold_7G00194660 Rroxscaffold_7G00194970 Rroxscaffold_7G00195820 Rroxscaffold_7G00199540 Rroxscaffold_7G00204360 Rroxscaffold_7G00210790
rosa_rugosa Rorug01G0042600 Rorug01G0468900 Rorug01G0477800 Rorug02G0061300 Rorug02G0347800 Rorug02G0347900 Rorug03G0149600 Rorug03G0149700 Rorug03G0149800 Rorug03G0149900 Rorug03G0150000 Rorug03G0221000 Rorug04G0065800 Rorug04G0123300.1 Rorug04G0210400 Rorug04G0210500 Rorug04G0210500 Rorug04G0210600 Rorug04G0212300 Rorug04G0212400 Rorug05G0252500 Rorug05G0252600 Rorug05G0262300 Rorug05G0274900 Rorug05G0412100 Rorug06G0014100 Rorug06G0014200 Rorug06G0014200 Rorug06G0047300 Rorug06G0047300 Rorug06G0395600 Rorug07G0040900 Rorug07G0062100.1 Rorug07G0264500
rosa_samantha Rh1CG053800 Rh1CG117700 Rh1CG147100 Rh1CG194400 Rh1CG194500 Rh1CG194600 Rh1CG255400 Rh1DG058000 Rh1DG174900 Rh1DG237100 Rh1DG284100 Rh2AG020500 Rh2AG031300 Rh2AG031800 Rh2AG032000 Rh2AG037100 Rh2AG372400 Rh2AG484500 Rh2BG030700 Rh2BG030800 Rh2BG031000 Rh2BG284400 Rh2BG379000 Rh2BG496800 Rh2CG020000 Rh2CG020100 Rh2CG031100 Rh2CG031500 Rh2CG358000 Rh2CG470700 Rh2DG031000 Rh2DG031500 Rh2DG395700 Rh2DG507600 Rh2DG521500 Rh2DG527500 Rh3AG333300 Rh3BG049800 Rh3BG308500 Rh3CG157300 Rh3CG364000 Rh3DG056400 Rh3DG158200 Rh3DG367300 Rh4AG093100 Rh4AG267500 Rh4AG267600 Rh4AG267700 Rh4AG267900 Rh4AG292600 Rh4AG359200 Rh4BG124000 Rh4BG273400 Rh4BG273500 Rh4BG273700 Rh4BG273800 Rh4BG274100 Rh4BG298300 Rh4CG101800 Rh4CG286300 Rh4CG287600 Rh4CG287700 Rh4CG288000 Rh4CG323900 Rh4DG023500 Rh4DG130100 Rh4DG270100 Rh4DG270200 Rh4DG270500 Rh4DG270600 Rh4DG270900 Rh4DG356900 Rh5AG145300 Rh5AG191400 Rh5AG206400 Rh5BG081500 Rh5BG185700 Rh5BG205100 Rh5BG245000 Rh5CG408600 Rh5CG484300 Rh5CG578100 Rh5DG114000 Rh5DG131700 Rh5DG133600 Rh5DG235800 Rh5DG242600 Rh5DG316000 Rh5DG353100 Rh5DG476500 Rh6AG270300 Rh6BG049700 Rh6BG220700 Rh6BG252300 Rh6CG304100 Rh6CG339400 Rh6CG357200 Rh6DG458900 Rh7AG088700 Rh7AG345700 Rh7BG093900 Rh7BG203900 Rh7BG238400 Rh7BG266700 Rh7BG393400 Rh7BG457800 Rh7DG422100
rosa_wichuraiana Rw0G001230 Rw0G004630 Rw0G013910 Rw0G020370 Rw0G021100 Rw1G001180 Rw1G001990 Rw1G002090 Rw1G007690 Rw1G010600 Rw1G016910 Rw1G017380 Rw1G017520 Rw1G019080 Rw1G023400 Rw1G023660 Rw1G034120 Rw2G001680 Rw2G002460 Rw2G002490 Rw2G016300 Rw2G023580 Rw2G030430 Rw2G031940 Rw2G039710 Rw2G048300 Rw2G051950 Rw3G025660 Rw4G014230 Rw4G023180 Rw4G023190 Rw4G023200 Rw4G023210 Rw4G023240 Rw4G031350 Rw4G034490 Rw5G002540 Rw5G015140 Rw5G018770 Rw5G023100 Rw5G031740 Rw5G041270 Rw5G044780 Rw5G046320 Rw6G017960 Rw6G022820 Rw6G025140 Rw6G026920 Rw7G000550 Rw7G015700 Rw7G020590 Rw7G024950 Rw7G025250 Rw7G025920 Rw7G027800 Rw7G027940 Rw7G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AclWI GGATC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 113, 122, 144, 372
AluBI AGCT 2 cut(s) 217, 428
AluI AGCT 2 cut(s) 217, 428
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 505
Alw44I GTGCAC 1 cut(s) 290
AlwI GGATC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 252
ApaLI GTGCAC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 137, 325
AsuHPI GGTGA 2 cut(s) 173, 202
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 2 cut(s) 137, 325
BaeGI GKGCMC 1 cut(s) 294
BauI CACGAG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 115
BccI CCATC 5 cut(s) 32, 128, 224, 235, 466
BcgI CGANNNNNNTGC 4 cut(s) 243, 277, 395, 429
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 3 cut(s) 389, 453, 468
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 137, 325
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 137, 325
BmiI GGNNCC 1 cut(s) 326
BmsI GCATC 2 cut(s) 7, 63
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 1 cut(s) 526
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 192
BseGI GGATG 3 cut(s) 22, 477, 490
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 322, 338
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 505
BsmFI GGGAC 2 cut(s) 322, 338
BsmI GAATGC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 202
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 326
BspPI GGATC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 11, 272
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 3 cut(s) 22, 477, 490
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 334, 465
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 22, 477, 490
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 137, 325
CviAII CATG 4 cut(s) 319, 331, 462, 532
CviJI RGCY 5 cut(s) 217, 250, 257, 428, 547
CviKI_1 RGCY 5 cut(s) 217, 250, 257, 428, 547
DdeI CTNAG 1 cut(s) 543
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 137, 325
Eco88I CYCGRG 1 cut(s) 252
FaeI CATG 4 cut(s) 322, 334, 465, 535
FaiI YATR 9 cut(s) 283, 320, 332, 418, 463, 482, 524, 533, 550
FaqI GGGAC 2 cut(s) 322, 338
FatI CATG 4 cut(s) 318, 330, 461, 531
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 3 cut(s) 29, 484, 497
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 3 cut(s) 389, 453, 468
GluI GCNGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 322, 334, 465, 535
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 2 cut(s) 215, 426
HphI GGTGA 2 cut(s) 173, 202
Hpy166II GTNNAC 3 cut(s) 149, 275, 292
Hpy188I TCNGA 2 cut(s) 59, 222
Hpy188III TCNNGA 2 cut(s) 96, 532
Hpy8I GTNNAC 3 cut(s) 149, 275, 292
HpyAV CCTTC 2 cut(s) 150, 378
HpyCH4III ACNGT 2 cut(s) 11, 272
HpyCH4V TGCA 7 cut(s) 20, 26, 104, 264, 292, 416, 461
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 4 cut(s) 322, 334, 465, 535
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 30, 81, 81, 434
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 7, 63
MaeI CTAG 3 cut(s) 389, 453, 468
MaeIII GTNAC 1 cut(s) 538
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 17, 250
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 6 cut(s) 165, 261, 315, 366, 374, 528
MslI CAYNNNNRTG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 229
NdeII GATC 1 cut(s) 202
NlaIII CATG 4 cut(s) 322, 334, 465, 535
NlaIV GGNNCC 1 cut(s) 326
NspI RCATGY 2 cut(s) 334, 465
PaeR7I CTCGAG 1 cut(s) 252
PagI TCATGA 1 cut(s) 531
PctI GAATGC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 2 cut(s) 137, 325
PspXI VCTCGAGB 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 137, 325
SduI GDGCHC 1 cut(s) 294
SetI ASST 5 cut(s) 219, 288, 366, 423, 430
SfaNI GCATC 2 cut(s) 7, 63
Sfr274I CTCGAG 1 cut(s) 252
SinI GGWCC 2 cut(s) 137, 325
SlaI CTCGAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 265
SspMI CTAG 3 cut(s) 389, 453, 468
TaaI ACNGT 2 cut(s) 11, 272
TaqI TCGA 2 cut(s) 253, 296
TasI AATT 1 cut(s) 265
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 501, 520
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 38
VneI GTGCAC 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 137, 325
XceI RCATGY 2 cut(s) 334, 465
XhoI CTCGAG 1 cut(s) 252
XspI CTAG 3 cut(s) 389, 453, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.