Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 503 - 610 | 1.3e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 643 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1016 |
| AccI | GTMKAC | 1 cut(s) | 406 |
| AccII | CGCG | 1 cut(s) | 1240 |
| AccIII | TCCGGA | 2 cut(s) | 1591, 1991 |
| AciI | CCGC | 1 cut(s) | 357 |
| AclWI | GGATC | 3 cut(s) | 1718, 1731, 2081 |
| AcsI | RAATTY | 4 cut(s) | 448, 817, 1215, 1246 |
| AcuI | CTGAAG | 1 cut(s) | 692 |
| AfaI | GTAC | 5 cut(s) | 391, 397, 765, 1328, 1903 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1016, 1720 |
| AflIII | ACRYGT | 2 cut(s) | 409, 893 |
| AjnI | CCWGG | 2 cut(s) | 125, 436 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 612, 644 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1715, 1747 |
| Alw26I | GTCTC | 2 cut(s) | 102, 1178 |
| AlwI | GGATC | 3 cut(s) | 1718, 1731, 2081 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 935, 1436 |
| Ama87I | CYCGRG | 2 cut(s) | 180, 241 |
| Aor13HI | TCCGGA | 2 cut(s) | 1591, 1991 |
| AoxI | GGCC | 4 cut(s) | 1195, 1424, 1803, 1965 |
| ApeKI | GCWGC | 8 cut(s) | 140, 368, 545, 1106, 1436, 1893, 1908, 1923 |
| ApoI | RAATTY | 4 cut(s) | 448, 817, 1215, 1246 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1141 |
| AspA2I | CCTAGG | 1 cut(s) | 1727 |
| AspLEI | GCGC | 1 cut(s) | 796 |
| AspS9I | GGNCC | 1 cut(s) | 724 |
| AsuHPI | GGTGA | 6 cut(s) | 62, 119, 520, 1294, 1388, 1760 |
| AsuNHI | GCTAGC | 1 cut(s) | 497 |
| AvaI | CYCGRG | 2 cut(s) | 180, 241 |
| AvaII | GGWCC | 1 cut(s) | 724 |
| AvrII | CCTAGG | 1 cut(s) | 1727 |
| BamHI | GGATCC | 1 cut(s) | 1723 |
| BanI | GGYRCC | 1 cut(s) | 643 |
| BanII | GRGCYC | 1 cut(s) | 2032 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 129, 161 |
| BbsI | GAAGAC | 2 cut(s) | 462, 1323 |
| BbvI | GCAGC | 8 cut(s) | 127, 380, 532, 1093, 1423, 1895, 1905, 1935 |
| BccI | CCATC | 8 cut(s) | 41, 77, 296, 476, 706, 990, 1236, 1630 |
| BceAI | ACGGC | 1 cut(s) | 1106 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 28, 382, 416 |
| BciT130I | CCWGG | 2 cut(s) | 127, 438 |
| BciVI | GTATCC | 1 cut(s) | 444 |
| BcoDI | GTCTC | 2 cut(s) | 102, 1178 |
| BfaI | CTAG | 7 cut(s) | 498, 651, 948, 1728, 1887, 1920, 2033 |
| BfmI | CTRYAG | 3 cut(s) | 744, 1437, 1846 |
| BfuI | GTATCC | 1 cut(s) | 444 |
| BglII | AGATCT | 1 cut(s) | 2007 |
| BisI | GCNGC | 8 cut(s) | 141, 369, 546, 1107, 1437, 1894, 1909, 1924 |
| BlnI | CCTAGG | 1 cut(s) | 1727 |
| BlsI | GCNGC | 8 cut(s) | 142, 370, 547, 1108, 1438, 1895, 1910, 1925 |
| BmcAI | AGTACT | 1 cut(s) | 397 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 438 |
| Bme18I | GGWCC | 1 cut(s) | 724 |
| BmeT110I | CYCGRG | 2 cut(s) | 180, 241 |
| BmgT120I | GGNCC | 1 cut(s) | 724 |
| BmiI | GGNNCC | 4 cut(s) | 120, 645, 725, 1725 |
| BmrFI | CCNGG | 2 cut(s) | 127, 438 |
| BmrI | ACTGGG | 1 cut(s) | 1004 |
| BmsI | GCATC | 5 cut(s) | 185, 1251, 1423, 1564, 1771 |
| BmtI | GCTAGC | 1 cut(s) | 501 |
| BmuI | ACTGGG | 1 cut(s) | 1004 |
| BpiI | GAAGAC | 2 cut(s) | 462, 1323 |
| BpmI | CTGGAG | 2 cut(s) | 887, 1757 |
| BpuEI | CTTGAG | 2 cut(s) | 156, 1495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2076 |
| BsaJI | CCNNGG | 8 cut(s) | 126, 181, 242, 437, 1727, 1800, 1962, 1968 |
| BsaWI | WCCGGW | 2 cut(s) | 1591, 1991 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1016, 1720 |
| Bse1I | ACTGG | 4 cut(s) | 904, 1010, 1774, 1903 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2076 |
| BseAI | TCCGGA | 2 cut(s) | 1591, 1991 |
| BseBI | CCWGG | 2 cut(s) | 127, 438 |
| BseDI | CCNNGG | 8 cut(s) | 126, 181, 242, 437, 1727, 1800, 1962, 1968 |
| BseGI | GGATG | 5 cut(s) | 176, 1001, 1234, 1363, 1600 |
| BseJI | GATNNNNATC | 1 cut(s) | 2076 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1016, 1720 |
| BseMII | CTCAG | 2 cut(s) | 113, 1557 |
| BseNI | ACTGG | 4 cut(s) | 904, 1010, 1774, 1903 |
| BseXI | GCAGC | 8 cut(s) | 127, 380, 532, 1093, 1423, 1895, 1905, 1935 |
| Bsh1236I | CGCG | 1 cut(s) | 1240 |
| BshFI | GGCC | 4 cut(s) | 1197, 1426, 1805, 1967 |
| BshNI | GGYRCC | 1 cut(s) | 643 |
| BsiHKCI | CYCGRG | 2 cut(s) | 180, 241 |
| BsiSI | CCGG | 2 cut(s) | 1592, 1992 |
| BslFI | GGGAC | 1 cut(s) | 737 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1016, 1720 |
| BsmAI | GTCTC | 2 cut(s) | 102, 1178 |
| BsmBI | CGTCTC | 1 cut(s) | 1178 |
| BsmFI | GGGAC | 1 cut(s) | 737 |
| BsnI | GGCC | 4 cut(s) | 1197, 1426, 1805, 1967 |
| BsoBI | CYCGRG | 2 cut(s) | 180, 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2032 |
| Bsp13I | TCCGGA | 2 cut(s) | 1591, 1991 |
| Bsp1407I | TGTACA | 1 cut(s) | 763 |
| Bsp143I | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| BspACI | CCGC | 1 cut(s) | 357 |
| BspANI | GGCC | 4 cut(s) | 1197, 1426, 1805, 1967 |
| BspCNI | CTCAG | 2 cut(s) | 112, 1558 |
| BspEI | TCCGGA | 2 cut(s) | 1591, 1991 |
| BspFNI | CGCG | 1 cut(s) | 1240 |
| BspLI | GGNNCC | 4 cut(s) | 120, 645, 725, 1725 |
| BspMAI | CTGCAG | 1 cut(s) | 1441 |
| BspOI | GCTAGC | 1 cut(s) | 501 |
| BspPI | GGATC | 3 cut(s) | 1718, 1731, 2081 |
| BspQI | GCTCTTC | 1 cut(s) | 1970 |
| BspT107I | GGYRCC | 1 cut(s) | 643 |
| BsrGI | TGTACA | 1 cut(s) | 763 |
| BsrI | ACTGG | 4 cut(s) | 904, 1010, 1774, 1903 |
| BssECI | CCNNGG | 8 cut(s) | 126, 181, 242, 437, 1727, 1800, 1962, 1968 |
| BssMI | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| BssT1I | CCWWGG | 4 cut(s) | 1727, 1800, 1962, 1968 |
| Bst2UI | CCWGG | 2 cut(s) | 127, 438 |
| Bst4CI | ACNGT | 5 cut(s) | 31, 253, 931, 1461, 1681 |
| Bst6I | CTCTTC | 5 cut(s) | 208, 1347, 1356, 1873, 1970 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 351 |
| BstAUI | TGTACA | 1 cut(s) | 763 |
| BstC8I | GCNNGC | 2 cut(s) | 499, 1290 |
| BstDEI | CTNAG | 4 cut(s) | 99, 1409, 1566, 2011 |
| BstF5I | GGATG | 5 cut(s) | 176, 1001, 1234, 1363, 1600 |
| BstFNI | CGCG | 1 cut(s) | 1240 |
| BstHHI | GCGC | 1 cut(s) | 796 |
| BstKTI | GATC | 6 cut(s) | 364, 1726, 1843, 1853, 2010, 2089 |
| BstMAI | GTCTC | 2 cut(s) | 102, 1178 |
| BstMBI | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 351, 365, 1304, 1535, 1562, 1790 |
| BstNI | CCWGG | 2 cut(s) | 127, 438 |
| BstNSI | RCATGY | 3 cut(s) | 413, 897, 1037 |
| BstSCI | CCNGG | 2 cut(s) | 125, 436 |
| BstSFI | CTRYAG | 3 cut(s) | 744, 1437, 1846 |
| BstUI | CGCG | 1 cut(s) | 1240 |
| BstV1I | GCAGC | 8 cut(s) | 127, 380, 532, 1093, 1423, 1895, 1905, 1935 |
| BstV2I | GAAGAC | 2 cut(s) | 462, 1323 |
| BstX2I | RGATCY | 3 cut(s) | 1723, 2007, 2086 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1242 |
| BstYI | RGATCY | 3 cut(s) | 1723, 2007, 2086 |
| BsuI | GTATCC | 1 cut(s) | 444 |
| BsuRI | GGCC | 4 cut(s) | 1197, 1426, 1805, 1967 |
| BtgZI | GCGATG | 1 cut(s) | 1255 |
| BtsCI | GGATG | 5 cut(s) | 176, 1001, 1234, 1363, 1600 |
| BtsI | GCAGTG | 2 cut(s) | 1524, 1647 |
| BtsIMutI | CAGTG | 6 cut(s) | 911, 936, 1017, 1524, 1647, 1896 |
| Cac8I | GCNNGC | 2 cut(s) | 499, 1290 |
| CaiI | CAGNNNCTG | 2 cut(s) | 935, 1436 |
| CfoI | GCGC | 1 cut(s) | 796 |
| Cfr13I | GGNCC | 1 cut(s) | 724 |
| CseI | GACGC | 2 cut(s) | 1195, 1900 |
| Csp6I | GTAC | 5 cut(s) | 390, 396, 764, 1327, 1902 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 942, 977 |
| CviAII | CATG | 4 cut(s) | 410, 894, 1030, 1034 |
| CviQI | GTAC | 5 cut(s) | 390, 396, 764, 1327, 1902 |
| DdeI | CTNAG | 4 cut(s) | 99, 1409, 1566, 2011 |
| DpnI | GATC | 6 cut(s) | 363, 1725, 1842, 1852, 2009, 2088 |
| DpnII | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| Eam1104I | CTCTTC | 5 cut(s) | 208, 1347, 1356, 1873, 1970 |
| EarI | CTCTTC | 5 cut(s) | 208, 1347, 1356, 1873, 1970 |
| Eco130I | CCWWGG | 4 cut(s) | 1727, 1800, 1962, 1968 |
| Eco24I | GRGCYC | 1 cut(s) | 2032 |
| Eco47I | GGWCC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 1 cut(s) | 692 |
| Eco88I | CYCGRG | 2 cut(s) | 180, 241 |
| EcoRI | GAATTC | 2 cut(s) | 1215, 1246 |
| EcoRII | CCWGG | 2 cut(s) | 125, 436 |
| EcoT14I | CCWWGG | 4 cut(s) | 1727, 1800, 1962, 1968 |
| EcoT22I | ATGCAT | 1 cut(s) | 1035 |
| EcoT38I | GRGCYC | 1 cut(s) | 2032 |
| ErhI | CCWWGG | 4 cut(s) | 1727, 1800, 1962, 1968 |
| Esp3I | CGTCTC | 1 cut(s) | 1178 |
| FaeI | CATG | 4 cut(s) | 413, 897, 1033, 1037 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 690, 722, 818, 850 |
| FaqI | GGGAC | 1 cut(s) | 737 |
| FatI | CATG | 4 cut(s) | 409, 893, 1029, 1033 |
| FauNDI | CATATG | 1 cut(s) | 1757 |
| FblI | GTMKAC | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 8 cut(s) | 141, 369, 546, 1107, 1437, 1894, 1909, 1924 |
| FokI | GGATG | 5 cut(s) | 163, 1008, 1241, 1370, 1607 |
| FriOI | GRGCYC | 1 cut(s) | 2032 |
| Fsp4HI | GCNGC | 8 cut(s) | 141, 369, 546, 1107, 1437, 1894, 1909, 1924 |
| FspBI | CTAG | 7 cut(s) | 498, 651, 948, 1728, 1887, 1920, 2033 |
| GlaI | GCGC | 1 cut(s) | 795 |
| GluI | GCNGC | 8 cut(s) | 141, 369, 546, 1107, 1437, 1894, 1909, 1924 |
| GsuI | CTGGAG | 2 cut(s) | 887, 1757 |
| HaeIII | GGCC | 4 cut(s) | 1197, 1426, 1805, 1967 |
| HapII | CCGG | 2 cut(s) | 1592, 1992 |
| HgaI | GACGC | 2 cut(s) | 1195, 1900 |
| HhaI | GCGC | 1 cut(s) | 796 |
| Hin1II | CATG | 4 cut(s) | 413, 897, 1033, 1037 |
| Hin6I | GCGC | 1 cut(s) | 794 |
| HinP1I | GCGC | 1 cut(s) | 794 |
| HincII | GTYRAC | 3 cut(s) | 249, 789, 927 |
| HindII | GTYRAC | 3 cut(s) | 249, 789, 927 |
| HindIII | AAGCTT | 2 cut(s) | 531, 1536 |
| HinfI | GANTC | 8 cut(s) | 17, 259, 374, 831, 1205, 1419, 2039, 2098 |
| HpaI | GTTAAC | 1 cut(s) | 789 |
| HpaII | CCGG | 2 cut(s) | 1592, 1992 |
| HphI | GGTGA | 6 cut(s) | 62, 119, 520, 1294, 1388, 1760 |
| Hpy166II | GTNNAC | 4 cut(s) | 249, 407, 789, 927 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 711, 1115, 2044 |
| Hpy188III | TCNNGA | 9 cut(s) | 180, 415, 835, 1057, 1474, 1544, 1592, 1887, 1992 |
| Hpy8I | GTNNAC | 4 cut(s) | 249, 407, 789, 927 |
| Hpy99I | CGWCG | 2 cut(s) | 193, 1916 |
| HpyAV | CCTTC | 7 cut(s) | 412, 499, 593, 657, 1187, 1810, 2009 |
| HpyCH4III | ACNGT | 5 cut(s) | 31, 253, 931, 1461, 1681 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 351, 365, 1304, 1535, 1562, 1790 |
| HpyF3I | CTNAG | 4 cut(s) | 99, 1409, 1566, 2011 |
| Hsp92II | CATG | 4 cut(s) | 413, 897, 1033, 1037 |
| HspAI | GCGC | 1 cut(s) | 794 |
| Kpn2I | TCCGGA | 2 cut(s) | 1591, 1991 |
| KspAI | GTTAAC | 1 cut(s) | 789 |
| Kzo9I | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| LguI | GCTCTTC | 1 cut(s) | 1970 |
| LmnI | GCTCC | 3 cut(s) | 359, 906, 1819 |
| Lsp1109I | GCAGC | 8 cut(s) | 127, 380, 532, 1093, 1423, 1895, 1905, 1935 |
| LweI | GCATC | 5 cut(s) | 185, 1251, 1423, 1564, 1771 |
| MaeI | CTAG | 7 cut(s) | 498, 651, 948, 1728, 1887, 1920, 2033 |
| MaeIII | GTNAC | 3 cut(s) | 522, 1492, 1751 |
| MalI | GATC | 6 cut(s) | 363, 1725, 1842, 1852, 2009, 2088 |
| MboI | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| MfeI | CAATTG | 1 cut(s) | 873 |
| MflI | RGATCY | 3 cut(s) | 1723, 2007, 2086 |
| MhlI | GDGCHC | 1 cut(s) | 2032 |
| MlyI | GAGTC | 1 cut(s) | 1428 |
| MmeI | TCCRAC | 2 cut(s) | 794, 1259 |
| Mph1103I | ATGCAT | 1 cut(s) | 1035 |
| MroI | TCCGGA | 2 cut(s) | 1591, 1991 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1141 |
| MseI | TTAA | 6 cut(s) | 384, 719, 740, 788, 1835, 2128 |
| MslI | CAYNNNNRTG | 2 cut(s) | 45, 1034 |
| MspA1I | CMGCKG | 2 cut(s) | 359, 371 |
| MspI | CCGG | 2 cut(s) | 1592, 1992 |
| MspR9I | CCNGG | 2 cut(s) | 127, 438 |
| MunI | CAATTG | 1 cut(s) | 873 |
| MvaI | CCWGG | 2 cut(s) | 127, 438 |
| MvnI | CGCG | 1 cut(s) | 1240 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 351, 365, 1304, 1535, 1562, 1790 |
| NdeI | CATATG | 1 cut(s) | 1757 |
| NdeII | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| NheI | GCTAGC | 1 cut(s) | 497 |
| NlaIII | CATG | 4 cut(s) | 413, 897, 1033, 1037 |
| NlaIV | GGNNCC | 4 cut(s) | 120, 645, 725, 1725 |
| NmuCI | GTSAC | 3 cut(s) | 522, 1492, 1751 |
| NsiI | ATGCAT | 1 cut(s) | 1035 |
| NspI | RCATGY | 3 cut(s) | 413, 897, 1037 |
| PciI | ACATGT | 2 cut(s) | 409, 893 |
| PciSI | GCTCTTC | 1 cut(s) | 1970 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1141 |
| PfeI | GAWTC | 7 cut(s) | 17, 259, 374, 831, 1205, 2039, 2098 |
| PflFI | GACNNNGTC | 1 cut(s) | 931 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1016 |
| PkrI | GCNGC | 8 cut(s) | 142, 370, 547, 1108, 1438, 1895, 1910, 1925 |
| PleI | GAGTC | 1 cut(s) | 1427 |
| PpsI | GAGTC | 1 cut(s) | 1427 |
| PscI | ACATGT | 2 cut(s) | 409, 893 |
| Psp6I | CCWGG | 2 cut(s) | 125, 436 |
| PspGI | CCWGG | 2 cut(s) | 125, 436 |
| PspN4I | GGNNCC | 4 cut(s) | 120, 645, 725, 1725 |
| PspPI | GGNCC | 1 cut(s) | 724 |
| PstI | CTGCAG | 1 cut(s) | 1441 |
| PstNI | CAGNNNCTG | 2 cut(s) | 935, 1436 |
| PsuI | RGATCY | 3 cut(s) | 1723, 2007, 2086 |
| PsyI | GACNNNGTC | 1 cut(s) | 931 |
| PvuII | CAGCTG | 1 cut(s) | 371 |
| RsaI | GTAC | 5 cut(s) | 391, 397, 765, 1328, 1903 |
| RsaNI | GTAC | 5 cut(s) | 390, 396, 764, 1327, 1902 |
| RseI | CAYNNNNRTG | 2 cut(s) | 45, 1034 |
| SapI | GCTCTTC | 1 cut(s) | 1970 |
| SaqAI | TTAA | 6 cut(s) | 384, 719, 740, 788, 1835, 2128 |
| SatI | GCNGC | 8 cut(s) | 141, 369, 546, 1107, 1437, 1894, 1909, 1924 |
| Sau3AI | GATC | 6 cut(s) | 361, 1723, 1840, 1850, 2007, 2086 |
| Sau96I | GGNCC | 1 cut(s) | 724 |
| ScaI | AGTACT | 1 cut(s) | 397 |
| SchI | GAGTC | 1 cut(s) | 1428 |
| ScrFI | CCNGG | 2 cut(s) | 127, 438 |
| SduI | GDGCHC | 1 cut(s) | 2032 |
| SfaNI | GCATC | 5 cut(s) | 185, 1251, 1423, 1564, 1771 |
| SfcI | CTRYAG | 3 cut(s) | 744, 1437, 1846 |
| SinI | GGWCC | 1 cut(s) | 724 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 45, 1034 |
| SmlI | CTYRAG | 2 cut(s) | 171, 1474 |
| SmoI | CTYRAG | 2 cut(s) | 171, 1474 |
| SsiI | CCGC | 1 cut(s) | 357 |
| SspMI | CTAG | 7 cut(s) | 498, 651, 948, 1728, 1887, 1920, 2033 |
| StyD4I | CCNGG | 2 cut(s) | 125, 436 |
| StyI | CCWWGG | 4 cut(s) | 1727, 1800, 1962, 1968 |
| TaaI | ACNGT | 5 cut(s) | 31, 253, 931, 1461, 1681 |
| TaqI | TCGA | 6 cut(s) | 191, 414, 634, 969, 1300, 1560 |
| TatI | WGTACW | 3 cut(s) | 395, 763, 1326 |
| TfiI | GAWTC | 7 cut(s) | 17, 259, 374, 831, 1205, 2039, 2098 |
| Tru1I | TTAA | 6 cut(s) | 384, 719, 740, 788, 1835, 2128 |
| Tru9I | TTAA | 6 cut(s) | 384, 719, 740, 788, 1835, 2128 |
| TscAI | CASTG | 6 cut(s) | 911, 936, 1017, 1531, 1647, 1903 |
| TseFI | GTSAC | 3 cut(s) | 522, 1492, 1751 |
| TseI | GCWGC | 8 cut(s) | 140, 368, 545, 1106, 1436, 1893, 1908, 1923 |
| Tsp45I | GTSAC | 3 cut(s) | 522, 1492, 1751 |
| TspRI | CASTG | 6 cut(s) | 911, 936, 1017, 1531, 1647, 1903 |
| Tth111I | GACNNNGTC | 1 cut(s) | 931 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1016 |
| VpaK11BI | GGWCC | 1 cut(s) | 724 |
| XapI | RAATTY | 4 cut(s) | 448, 817, 1215, 1246 |
| XbaI | TCTAGA | 1 cut(s) | 1886 |
| XceI | RCATGY | 3 cut(s) | 413, 897, 1037 |
| XmaJI | CCTAGG | 1 cut(s) | 1727 |
| XmiI | GTMKAC | 1 cut(s) | 406 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1141 |
| XspI | CTAG | 7 cut(s) | 498, 651, 948, 1728, 1887, 1920, 2033 |
| ZrmI | AGTACT | 1 cut(s) | 397 |
| Zsp2I | ATGCAT | 1 cut(s) | 1035 |