Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 1 - 63 | 1.9e-06 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 83 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 23, 320 |
| AfaI | GTAC | 3 cut(s) | 269, 362, 369 |
| AgsI | TTSAA | 4 cut(s) | 58, 178, 287, 320 |
| AluBI | AGCT | 4 cut(s) | 45, 103, 232, 242 |
| AluI | AGCT | 4 cut(s) | 45, 103, 232, 242 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 374 |
| ApoI | RAATTY | 2 cut(s) | 23, 320 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 23 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 344, 377 |
| BbvI | GCAGC | 1 cut(s) | 386 |
| BccI | CCATC | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfaI | CTAG | 2 cut(s) | 275, 294 |
| BisI | GCNGC | 1 cut(s) | 375 |
| BlsI | GCNGC | 1 cut(s) | 376 |
| BmcAI | AGTACT | 1 cut(s) | 269 |
| BpmI | CTGGAG | 1 cut(s) | 232 |
| BpuEI | CTTGAG | 1 cut(s) | 14 |
| BsaBI | GATNNNNATC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 144 |
| Bse1I | ACTGG | 1 cut(s) | 215 |
| Bse3DI | GCAATG | 1 cut(s) | 393 |
| Bse8I | GATNNNNATC | 1 cut(s) | 57 |
| BseDI | CCNNGG | 1 cut(s) | 144 |
| BseGI | GGATG | 2 cut(s) | 187, 351 |
| BseJI | GATNNNNATC | 1 cut(s) | 57 |
| BseMI | GCAATG | 1 cut(s) | 393 |
| BseMII | CTCAG | 1 cut(s) | 118 |
| BseNI | ACTGG | 1 cut(s) | 215 |
| BseXI | GCAGC | 1 cut(s) | 386 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp143I | GATC | 1 cut(s) | 88 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 117 |
| BspHI | TCATGA | 1 cut(s) | 253 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BsrDI | GCAATG | 1 cut(s) | 393 |
| BsrI | ACTGG | 1 cut(s) | 215 |
| BssECI | CCNNGG | 1 cut(s) | 144 |
| BssMI | GATC | 1 cut(s) | 88 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 104, 357 |
| BstF5I | GGATG | 2 cut(s) | 187, 351 |
| BstKTI | GATC | 1 cut(s) | 91 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 380 |
| BstV1I | GCAGC | 1 cut(s) | 386 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsCI | GGATG | 2 cut(s) | 187, 351 |
| CciI | TCATGA | 1 cut(s) | 253 |
| Csp6I | GTAC | 3 cut(s) | 268, 361, 368 |
| CviAII | CATG | 2 cut(s) | 202, 254 |
| CviJI | RGCY | 9 cut(s) | 5, 45, 79, 103, 206, 232, 242, 297, 383 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 45, 79, 103, 206, 232, 242, 297, 383 |
| CviQI | GTAC | 3 cut(s) | 268, 361, 368 |
| DdeI | CTNAG | 2 cut(s) | 104, 357 |
| DpnI | GATC | 1 cut(s) | 90 |
| DpnII | GATC | 1 cut(s) | 88 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| EcoRI | GAATTC | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| FaeI | CATG | 2 cut(s) | 205, 257 |
| FaiI | YATR | 7 cut(s) | 74, 95, 111, 113, 203, 255, 337 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 300, 332 |
| FatI | CATG | 2 cut(s) | 201, 253 |
| Fnu4HI | GCNGC | 1 cut(s) | 375 |
| FokI | GGATG | 2 cut(s) | 194, 358 |
| Fsp4HI | GCNGC | 1 cut(s) | 375 |
| FspBI | CTAG | 2 cut(s) | 275, 294 |
| GluI | GCNGC | 1 cut(s) | 375 |
| GsuI | CTGGAG | 1 cut(s) | 232 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 205, 257 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 58, 82 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 262 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 107, 194 |
| Hpy188III | TCNNGA | 3 cut(s) | 86, 254, 284 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 262 |
| HpyAV | CCTTC | 2 cut(s) | 128, 172 |
| HpyCH4V | TGCA | 1 cut(s) | 374 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 380 |
| HpyF3I | CTNAG | 2 cut(s) | 104, 357 |
| Hsp92II | CATG | 2 cut(s) | 205, 257 |
| Kzo9I | GATC | 1 cut(s) | 88 |
| LmnI | GCTCC | 2 cut(s) | 42, 213 |
| LpnPI | CCDG | 1 cut(s) | 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 386 |
| MaeI | CTAG | 2 cut(s) | 275, 294 |
| MaeIII | GTNAC | 2 cut(s) | 197, 289 |
| MalI | GATC | 1 cut(s) | 90 |
| MboI | GATC | 1 cut(s) | 88 |
| MboII | GAAGA | 4 cut(s) | 28, 31, 161, 181 |
| MluCI | AATT | 2 cut(s) | 23, 320 |
| MnlI | CCTC | 3 cut(s) | 38, 188, 336 |
| MroXI | GAANNNNTTC | 1 cut(s) | 23 |
| MseI | TTAA | 2 cut(s) | 188, 403 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 380 |
| NdeII | GATC | 1 cut(s) | 88 |
| NlaIII | CATG | 2 cut(s) | 205, 257 |
| NmuCI | GTSAC | 1 cut(s) | 289 |
| PagI | TCATGA | 1 cut(s) | 253 |
| PdmI | GAANNNNTTC | 1 cut(s) | 23 |
| PfeI | GAWTC | 2 cut(s) | 58, 82 |
| PkrI | GCNGC | 1 cut(s) | 376 |
| RsaI | GTAC | 3 cut(s) | 269, 362, 369 |
| RsaNI | GTAC | 3 cut(s) | 268, 361, 368 |
| SaqAI | TTAA | 2 cut(s) | 188, 403 |
| SatI | GCNGC | 1 cut(s) | 375 |
| Sau3AI | GATC | 1 cut(s) | 88 |
| ScaI | AGTACT | 1 cut(s) | 269 |
| SetI | ASST | 8 cut(s) | 47, 105, 199, 222, 234, 244, 358, 366 |
| SmlI | CTYRAG | 1 cut(s) | 29 |
| SmoI | CTYRAG | 1 cut(s) | 29 |
| Sse9I | AATT | 2 cut(s) | 23, 320 |
| SspMI | CTAG | 2 cut(s) | 275, 294 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TasI | AATT | 2 cut(s) | 23, 320 |
| TatI | WGTACW | 2 cut(s) | 267, 367 |
| TfiI | GAWTC | 2 cut(s) | 58, 82 |
| Tru1I | TTAA | 2 cut(s) | 188, 403 |
| Tru9I | TTAA | 2 cut(s) | 188, 403 |
| TseFI | GTSAC | 1 cut(s) | 289 |
| TseI | GCWGC | 1 cut(s) | 374 |
| Tsp45I | GTSAC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 7 cut(s) | 29, 107, 147, 242, 252, 270, 362 |
| XapI | RAATTY | 2 cut(s) | 23, 320 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 151 |
| XmnI | GAANNNNTTC | 1 cut(s) | 23 |
| XspI | CTAG | 2 cut(s) | 275, 294 |
| ZrmI | AGTACT | 1 cut(s) | 269 |