BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 239 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 296 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccIII | TCCGGA | 1 cut(s) | 407 |
| AclWI | GGATC | 1 cut(s) | 535 |
| AcsI | RAATTY | 2 cut(s) | 354, 610 |
| AdeI | CACNNNGTG | 1 cut(s) | 494 |
| AfaI | GTAC | 1 cut(s) | 589 |
| AflIII | ACRYGT | 1 cut(s) | 598 |
| AgsI | TTSAA | 5 cut(s) | 149, 287, 352, 509, 647 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AluBI | AGCT | 4 cut(s) | 36, 167, 500, 564 |
| AluI | AGCT | 4 cut(s) | 36, 167, 500, 564 |
| Alw21I | GWGCWC | 3 cut(s) | 38, 169, 566 |
| Alw26I | GTCTC | 1 cut(s) | 21 |
| AlwI | GGATC | 1 cut(s) | 535 |
| Aor13HI | TCCGGA | 1 cut(s) | 407 |
| ApeKI | GCWGC | 1 cut(s) | 497 |
| ApoI | RAATTY | 2 cut(s) | 354, 610 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuC2I | CCSGG | 1 cut(s) | 594 |
| AsuHPI | GGTGA | 2 cut(s) | 95, 584 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BanII | GRGCYC | 4 cut(s) | 38, 169, 178, 566 |
| BauI | CACGAG | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 294 |
| Bbv12I | GWGCWC | 3 cut(s) | 38, 169, 566 |
| BbvI | GCAGC | 1 cut(s) | 509 |
| BccI | CCATC | 2 cut(s) | 211, 445 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcnI | CCSGG | 1 cut(s) | 594 |
| BcoDI | GTCTC | 1 cut(s) | 21 |
| BfmI | CTRYAG | 1 cut(s) | 321 |
| BisI | GCNGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 1 cut(s) | 499 |
| BmcAI | AGTACT | 1 cut(s) | 589 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 594 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 1 cut(s) | 12 |
| BmrFI | CCNGG | 2 cut(s) | 127, 594 |
| BmsI | GCATC | 1 cut(s) | 259 |
| BpiI | GAAGAC | 1 cut(s) | 294 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BpuMI | CCSGG | 1 cut(s) | 594 |
| BsaAI | YACGTR | 1 cut(s) | 538 |
| BsaJI | CCNNGG | 1 cut(s) | 126 |
| BsaWI | WCCGGW | 1 cut(s) | 407 |
| BseAI | TCCGGA | 1 cut(s) | 407 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 126 |
| BseGI | GGATG | 2 cut(s) | 274, 437 |
| BseMII | CTCAG | 2 cut(s) | 161, 435 |
| BseRI | GAGGAG | 1 cut(s) | 406 |
| BseXI | GCAGC | 1 cut(s) | 509 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 3 cut(s) | 38, 169, 566 |
| BsiSI | CCGG | 2 cut(s) | 408, 594 |
| BslFI | GGGAC | 1 cut(s) | 143 |
| BsmAI | GTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 4 cut(s) | 38, 169, 178, 566 |
| Bsp13I | TCCGGA | 1 cut(s) | 407 |
| Bsp143I | GATC | 2 cut(s) | 58, 540 |
| BspCNI | CTCAG | 2 cut(s) | 162, 436 |
| BspEI | TCCGGA | 1 cut(s) | 407 |
| BspLI | GGNNCC | 1 cut(s) | 12 |
| BspPI | GGATC | 1 cut(s) | 535 |
| BssECI | CCNNGG | 1 cut(s) | 126 |
| BssMI | GATC | 2 cut(s) | 58, 540 |
| BssSI | CACGAG | 1 cut(s) | 31 |
| Bst2BI | CACGAG | 1 cut(s) | 31 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 525 |
| Bst6I | CTCTTC | 2 cut(s) | 155, 409 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 494 |
| BstBAI | YACGTR | 1 cut(s) | 538 |
| BstDEI | CTNAG | 3 cut(s) | 170, 213, 444 |
| BstF5I | GGATG | 2 cut(s) | 274, 437 |
| BstKTI | GATC | 2 cut(s) | 61, 543 |
| BstMAI | GTCTC | 1 cut(s) | 21 |
| BstMBI | GATC | 2 cut(s) | 58, 540 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 494 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstNSI | RCATGY | 1 cut(s) | 602 |
| BstSCI | CCNGG | 2 cut(s) | 125, 592 |
| BstSFI | CTRYAG | 1 cut(s) | 321 |
| BstV1I | GCAGC | 1 cut(s) | 509 |
| BstV2I | GAAGAC | 1 cut(s) | 294 |
| BtsCI | GGATG | 2 cut(s) | 274, 437 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 588 |
| CviAII | CATG | 3 cut(s) | 62, 342, 599 |
| CviJI | RGCY | 8 cut(s) | 36, 167, 176, 374, 401, 500, 512, 564 |
| CviKI_1 | RGCY | 8 cut(s) | 36, 167, 176, 374, 401, 500, 512, 564 |
| CviQI | GTAC | 1 cut(s) | 588 |
| DdeI | CTNAG | 3 cut(s) | 170, 213, 444 |
| DpnI | GATC | 2 cut(s) | 60, 542 |
| DpnII | GATC | 2 cut(s) | 58, 540 |
| DraIII | CACNNNGTG | 1 cut(s) | 494 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 296 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 296 |
| Eam1104I | CTCTTC | 2 cut(s) | 155, 409 |
| EarI | CTCTTC | 2 cut(s) | 155, 409 |
| Ecl136II | GAGCTC | 3 cut(s) | 36, 167, 564 |
| Eco24I | GRGCYC | 4 cut(s) | 38, 169, 178, 566 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco53kI | GAGCTC | 3 cut(s) | 36, 167, 564 |
| EcoICRI | GAGCTC | 3 cut(s) | 36, 167, 564 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| EcoT38I | GRGCYC | 4 cut(s) | 38, 169, 178, 566 |
| FaeI | CATG | 3 cut(s) | 65, 345, 602 |
| FaqI | GGGAC | 1 cut(s) | 143 |
| FatI | CATG | 3 cut(s) | 61, 341, 598 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 1 cut(s) | 498 |
| FokI | GGATG | 2 cut(s) | 281, 424 |
| FriOI | GRGCYC | 4 cut(s) | 38, 169, 178, 566 |
| Fsp4HI | GCNGC | 1 cut(s) | 498 |
| GluI | GCNGC | 1 cut(s) | 498 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HapII | CCGG | 2 cut(s) | 408, 594 |
| Hin1II | CATG | 3 cut(s) | 65, 345, 602 |
| HinfI | GANTC | 6 cut(s) | 116, 122, 303, 422, 575, 604 |
| HpaII | CCGG | 2 cut(s) | 408, 594 |
| HphI | GGTGA | 2 cut(s) | 95, 584 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 121, 171, 302 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 198, 266, 408, 551 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| Hpy99I | CGWCG | 1 cut(s) | 572 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 525 |
| HpyCH4IV | ACGT | 1 cut(s) | 537 |
| HpyCH4V | TGCA | 4 cut(s) | 182, 272, 497, 625 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 494 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 213, 444 |
| HpySE526I | ACGT | 1 cut(s) | 537 |
| Hsp92II | CATG | 3 cut(s) | 65, 345, 602 |
| Kpn2I | TCCGGA | 1 cut(s) | 407 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 2 cut(s) | 58, 540 |
| LmnI | GCTCC | 1 cut(s) | 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 509 |
| LweI | GCATC | 1 cut(s) | 259 |
| MaeII | ACGT | 1 cut(s) | 537 |
| MalI | GATC | 2 cut(s) | 60, 542 |
| MboI | GATC | 2 cut(s) | 58, 540 |
| MboII | GAAGA | 4 cut(s) | 172, 299, 396, 466 |
| MhlI | GDGCHC | 4 cut(s) | 38, 169, 178, 566 |
| MluCI | AATT | 4 cut(s) | 189, 354, 380, 610 |
| MlyI | GAGTC | 1 cut(s) | 312 |
| MmeI | TCCRAC | 1 cut(s) | 280 |
| MnlI | CCTC | 6 cut(s) | 133, 165, 349, 384, 404, 412 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MroI | TCCGGA | 1 cut(s) | 407 |
| MseI | TTAA | 3 cut(s) | 188, 276, 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 66 |
| MspA1I | CMGCKG | 1 cut(s) | 500 |
| MspI | CCGG | 2 cut(s) | 408, 594 |
| MspR9I | CCNGG | 2 cut(s) | 127, 594 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 494 |
| NciI | CCSGG | 1 cut(s) | 594 |
| NdeII | GATC | 2 cut(s) | 58, 540 |
| NlaIII | CATG | 3 cut(s) | 65, 345, 602 |
| NlaIV | GGNNCC | 1 cut(s) | 12 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| NspI | RCATGY | 1 cut(s) | 602 |
| PciI | ACATGT | 1 cut(s) | 598 |
| PfeI | GAWTC | 5 cut(s) | 116, 122, 422, 575, 604 |
| PflFI | GACNNNGTC | 1 cut(s) | 134 |
| PfoI | TCCNGGA | 1 cut(s) | 592 |
| PkrI | GCNGC | 1 cut(s) | 499 |
| PleI | GAGTC | 1 cut(s) | 311 |
| PpsI | GAGTC | 1 cut(s) | 311 |
| Ppu21I | YACGTR | 1 cut(s) | 538 |
| PscI | ACATGT | 1 cut(s) | 598 |
| PsiI | TTATAA | 1 cut(s) | 239 |
| Psp124BI | GAGCTC | 3 cut(s) | 38, 169, 566 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 1 cut(s) | 12 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 318, 350 |
| PsyI | GACNNNGTC | 1 cut(s) | 134 |
| PvuII | CAGCTG | 1 cut(s) | 500 |
| RsaI | GTAC | 1 cut(s) | 589 |
| RsaNI | GTAC | 1 cut(s) | 588 |
| RseI | CAYNNNNRTG | 1 cut(s) | 66 |
| SacI | GAGCTC | 3 cut(s) | 38, 169, 566 |
| SaqAI | TTAA | 3 cut(s) | 188, 276, 365 |
| SatI | GCNGC | 1 cut(s) | 498 |
| Sau3AI | GATC | 2 cut(s) | 58, 540 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| ScaI | AGTACT | 1 cut(s) | 589 |
| SchI | GAGTC | 1 cut(s) | 312 |
| ScrFI | CCNGG | 2 cut(s) | 127, 594 |
| SduI | GDGCHC | 4 cut(s) | 38, 169, 178, 566 |
| SfaNI | GCATC | 1 cut(s) | 259 |
| SfcI | CTRYAG | 1 cut(s) | 321 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 66 |
| Sse9I | AATT | 4 cut(s) | 189, 354, 380, 610 |
| SstI | GAGCTC | 3 cut(s) | 38, 169, 566 |
| StyD4I | CCNGG | 2 cut(s) | 125, 592 |
| TaaI | ACNGT | 2 cut(s) | 10, 525 |
| TaiI | ACGT | 1 cut(s) | 540 |
| TaqI | TCGA | 3 cut(s) | 104, 138, 389 |
| TasI | AATT | 4 cut(s) | 189, 354, 380, 610 |
| TatI | WGTACW | 1 cut(s) | 587 |
| TfiI | GAWTC | 5 cut(s) | 116, 122, 422, 575, 604 |
| Tru1I | TTAA | 3 cut(s) | 188, 276, 365 |
| Tru9I | TTAA | 3 cut(s) | 188, 276, 365 |
| TseI | GCWGC | 1 cut(s) | 497 |
| TspDTI | ATGAA | 3 cut(s) | 99, 567, 631 |
| TspGWI | ACGGA | 2 cut(s) | 495, 556 |
| Tth111I | GACNNNGTC | 1 cut(s) | 134 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XapI | RAATTY | 2 cut(s) | 354, 610 |
| XceI | RCATGY | 1 cut(s) | 602 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| ZrmI | AGTACT | 1 cut(s) | 589 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |