Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 326 - 384 | 1e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 773 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 587 |
| AciI | CCGC | 1 cut(s) | 1121 |
| AclWI | GGATC | 2 cut(s) | 171, 1129 |
| AcoI | YGGCCR | 1 cut(s) | 1563 |
| AcsI | RAATTY | 8 cut(s) | 311, 531, 692, 727, 938, 1000, 1286, 1334 |
| AcuI | CTGAAG | 3 cut(s) | 485, 1281, 1560 |
| AfaI | GTAC | 6 cut(s) | 780, 797, 846, 1420, 1434, 1489 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 587 |
| AflII | CTTAAG | 1 cut(s) | 431 |
| AflIII | ACRYGT | 1 cut(s) | 299 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 973, 1005 |
| AluBI | AGCT | 8 cut(s) | 44, 200, 404, 475, 602, 1131, 1299, 1452 |
| AluI | AGCT | 8 cut(s) | 44, 200, 404, 475, 602, 1131, 1299, 1452 |
| Alw21I | GWGCWC | 1 cut(s) | 718 |
| Alw26I | GTCTC | 2 cut(s) | 5, 1048 |
| AlwI | GGATC | 2 cut(s) | 171, 1129 |
| Ama87I | CYCGRG | 1 cut(s) | 1491 |
| AoxI | GGCC | 3 cut(s) | 348, 670, 1563 |
| ApoI | RAATTY | 8 cut(s) | 311, 531, 692, 727, 938, 1000, 1286, 1334 |
| AseI | ATTAAT | 1 cut(s) | 18 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1160 |
| AsuHPI | GGTGA | 3 cut(s) | 276, 887, 1277 |
| AsuNHI | GCTAGC | 1 cut(s) | 1295 |
| AvaI | CYCGRG | 1 cut(s) | 1491 |
| BbsI | GAAGAC | 3 cut(s) | 82, 285, 1275 |
| Bbv12I | GWGCWC | 1 cut(s) | 718 |
| BccI | CCATC | 4 cut(s) | 255, 737, 907, 1058 |
| BciVI | GTATCC | 1 cut(s) | 999 |
| BclI | TGATCA | 1 cut(s) | 760 |
| BcoDI | GTCTC | 2 cut(s) | 5, 1048 |
| BfaI | CTAG | 5 cut(s) | 87, 98, 599, 1296, 1436 |
| BfmI | CTRYAG | 2 cut(s) | 442, 1447 |
| BfrI | CTTAAG | 1 cut(s) | 431 |
| BfuI | GTATCC | 1 cut(s) | 999 |
| BmcAI | AGTACT | 1 cut(s) | 1434 |
| BmeT110I | CYCGRG | 1 cut(s) | 1491 |
| BmiI | GGNNCC | 1 cut(s) | 982 |
| BmsI | GCATC | 2 cut(s) | 798, 1282 |
| BmtI | GCTAGC | 1 cut(s) | 1299 |
| BpiI | GAAGAC | 3 cut(s) | 82, 285, 1275 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 637, 669 |
| BpuEI | CTTGAG | 1 cut(s) | 1072 |
| BsaBI | GATNNNNATC | 1 cut(s) | 751 |
| BsaJI | CCNNGG | 2 cut(s) | 1014, 1138 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 520, 550, 1193, 1223 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 587 |
| Bse3DI | GCAATG | 1 cut(s) | 1143 |
| Bse8I | GATNNNNATC | 1 cut(s) | 751 |
| BseDI | CCNNGG | 2 cut(s) | 1014, 1138 |
| BseGI | GGATG | 1 cut(s) | 1390 |
| BseJI | GATNNNNATC | 1 cut(s) | 751 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 587 |
| BseMI | GCAATG | 1 cut(s) | 1143 |
| BseMII | CTCAG | 2 cut(s) | 150, 302 |
| BsgI | GTGCAG | 1 cut(s) | 198 |
| BshFI | GGCC | 3 cut(s) | 350, 672, 1565 |
| BsiHKAI | GWGCWC | 1 cut(s) | 718 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1491 |
| BsiSI | CCGG | 1 cut(s) | 1566 |
| BslFI | GGGAC | 1 cut(s) | 929 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 587 |
| BsmAI | GTCTC | 2 cut(s) | 5, 1048 |
| BsmFI | GGGAC | 1 cut(s) | 929 |
| BsmI | GAATGC | 1 cut(s) | 188 |
| BsnI | GGCC | 3 cut(s) | 350, 672, 1565 |
| BsoBI | CYCGRG | 1 cut(s) | 1491 |
| Bsp1286I | GDGCHC | 1 cut(s) | 718 |
| Bsp1407I | TGTACA | 1 cut(s) | 844 |
| Bsp143I | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| BspACI | CCGC | 1 cut(s) | 1121 |
| BspANI | GGCC | 3 cut(s) | 350, 672, 1565 |
| BspCNI | CTCAG | 2 cut(s) | 151, 301 |
| BspHI | TCATGA | 3 cut(s) | 250, 1071, 1236 |
| BspLI | GGNNCC | 1 cut(s) | 982 |
| BspOI | GCTAGC | 1 cut(s) | 1299 |
| BspPI | GGATC | 2 cut(s) | 171, 1129 |
| BspTI | CTTAAG | 1 cut(s) | 431 |
| BsrDI | GCAATG | 1 cut(s) | 1143 |
| BsrGI | TGTACA | 1 cut(s) | 844 |
| BssECI | CCNNGG | 2 cut(s) | 1014, 1138 |
| BssMI | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| BssT1I | CCWWGG | 2 cut(s) | 1014, 1138 |
| Bst4CI | ACNGT | 2 cut(s) | 1037, 1448 |
| Bst6I | CTCTTC | 1 cut(s) | 865 |
| BstAFI | CTTAAG | 1 cut(s) | 431 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 367 |
| BstAUI | TGTACA | 1 cut(s) | 844 |
| BstC8I | GCNNGC | 2 cut(s) | 177, 1297 |
| BstDEI | CTNAG | 3 cut(s) | 159, 288, 557 |
| BstF5I | GGATG | 1 cut(s) | 1390 |
| BstKTI | GATC | 5 cut(s) | 166, 612, 763, 1137, 1441 |
| BstMAI | GTCTC | 2 cut(s) | 5, 1048 |
| BstMBI | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 243, 367, 1475 |
| BstSFI | CTRYAG | 2 cut(s) | 442, 1447 |
| BstV2I | GAAGAC | 3 cut(s) | 82, 285, 1275 |
| BsuI | GTATCC | 1 cut(s) | 999 |
| BsuRI | GGCC | 3 cut(s) | 350, 672, 1565 |
| BtsCI | GGATG | 1 cut(s) | 1390 |
| BtsIMutI | CAGTG | 1 cut(s) | 1164 |
| Cac8I | GCNNGC | 2 cut(s) | 177, 1297 |
| CciI | TCATGA | 3 cut(s) | 250, 1071, 1236 |
| CseI | GACGC | 1 cut(s) | 1475 |
| Csp6I | GTAC | 6 cut(s) | 779, 796, 845, 1419, 1433, 1488 |
| CviAII | CATG | 7 cut(s) | 62, 251, 362, 464, 701, 1072, 1237 |
| CviQI | GTAC | 6 cut(s) | 779, 796, 845, 1419, 1433, 1488 |
| DdeI | CTNAG | 3 cut(s) | 159, 288, 557 |
| DpnI | GATC | 5 cut(s) | 165, 611, 762, 1136, 1440 |
| DpnII | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| EaeI | YGGCCR | 1 cut(s) | 1563 |
| Eam1104I | CTCTTC | 1 cut(s) | 865 |
| EarI | CTCTTC | 1 cut(s) | 865 |
| EciI | GGCGGA | 1 cut(s) | 1136 |
| Eco130I | CCWWGG | 2 cut(s) | 1014, 1138 |
| Eco147I | AGGCCT | 1 cut(s) | 672 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| Eco57I | CTGAAG | 3 cut(s) | 485, 1281, 1560 |
| Eco88I | CYCGRG | 1 cut(s) | 1491 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT14I | CCWWGG | 2 cut(s) | 1014, 1138 |
| EcoT22I | ATGCAT | 1 cut(s) | 188 |
| ErhI | CCWWGG | 2 cut(s) | 1014, 1138 |
| FaeI | CATG | 7 cut(s) | 65, 254, 365, 467, 704, 1075, 1240 |
| FaqI | GGGAC | 1 cut(s) | 929 |
| FatI | CATG | 7 cut(s) | 61, 250, 361, 463, 700, 1071, 1236 |
| FauNDI | CATATG | 1 cut(s) | 570 |
| FbaI | TGATCA | 1 cut(s) | 760 |
| FokI | GGATG | 1 cut(s) | 1397 |
| FspBI | CTAG | 5 cut(s) | 87, 98, 599, 1296, 1436 |
| HaeIII | GGCC | 3 cut(s) | 350, 672, 1565 |
| HapII | CCGG | 1 cut(s) | 1566 |
| HgaI | GACGC | 1 cut(s) | 1475 |
| Hin1II | CATG | 7 cut(s) | 65, 254, 365, 467, 704, 1075, 1240 |
| HinfI | GANTC | 3 cut(s) | 215, 396, 505 |
| HpaII | CCGG | 1 cut(s) | 1566 |
| HphI | GGTGA | 3 cut(s) | 276, 887, 1277 |
| Hpy166II | GTNNAC | 1 cut(s) | 59 |
| Hpy188I | TCNGA | 3 cut(s) | 401, 504, 547 |
| Hpy8I | GTNNAC | 1 cut(s) | 59 |
| HpyAV | CCTTC | 3 cut(s) | 435, 683, 1256 |
| HpyCH4III | ACNGT | 2 cut(s) | 1037, 1448 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 5 cut(s) | 179, 186, 269, 789, 1148 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 243, 367, 1475 |
| HpyF3I | CTNAG | 3 cut(s) | 159, 288, 557 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92II | CATG | 7 cut(s) | 65, 254, 365, 467, 704, 1075, 1240 |
| Ksp22I | TGATCA | 1 cut(s) | 760 |
| Kzo9I | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| LmnI | GCTCC | 2 cut(s) | 197, 1528 |
| LweI | GCATC | 2 cut(s) | 798, 1282 |
| MaeI | CTAG | 5 cut(s) | 87, 98, 599, 1296, 1436 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 5 cut(s) | 154, 282, 552, 875, 961 |
| MalI | GATC | 5 cut(s) | 165, 611, 762, 1136, 1440 |
| MboI | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| MboII | GAAGA | 9 cut(s) | 41, 87, 285, 297, 882, 1280, 1339, 1367, 1553 |
| MfeI | CAATTG | 2 cut(s) | 656, 756 |
| MhlI | GDGCHC | 1 cut(s) | 718 |
| MmeI | TCCRAC | 4 cut(s) | 110, 1344, 1362, 1530 |
| Mph1103I | ATGCAT | 1 cut(s) | 188 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1160 |
| MslI | CAYNNNNRTG | 3 cut(s) | 622, 1062, 1483 |
| MspCI | CTTAAG | 1 cut(s) | 431 |
| MspI | CCGG | 1 cut(s) | 1566 |
| MunI | CAATTG | 2 cut(s) | 656, 756 |
| Mva1269I | GAATGC | 1 cut(s) | 188 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 243, 367, 1475 |
| NdeI | CATATG | 1 cut(s) | 570 |
| NdeII | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| NheI | GCTAGC | 1 cut(s) | 1295 |
| NlaIII | CATG | 7 cut(s) | 65, 254, 365, 467, 704, 1075, 1240 |
| NlaIV | GGNNCC | 1 cut(s) | 982 |
| NmuCI | GTSAC | 4 cut(s) | 154, 282, 875, 961 |
| NsiI | ATGCAT | 1 cut(s) | 188 |
| PaeR7I | CTCGAG | 1 cut(s) | 1491 |
| PagI | TCATGA | 3 cut(s) | 250, 1071, 1236 |
| PceI | AGGCCT | 1 cut(s) | 672 |
| PctI | GAATGC | 1 cut(s) | 188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1160 |
| PfeI | GAWTC | 3 cut(s) | 215, 396, 505 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 587 |
| PshBI | ATTAAT | 1 cut(s) | 18 |
| PsiI | TTATAA | 1 cut(s) | 773 |
| PspN4I | GGNNCC | 1 cut(s) | 982 |
| RsaI | GTAC | 6 cut(s) | 780, 797, 846, 1420, 1434, 1489 |
| RsaNI | GTAC | 6 cut(s) | 779, 796, 845, 1419, 1433, 1488 |
| RseI | CAYNNNNRTG | 3 cut(s) | 622, 1062, 1483 |
| Sau3AI | GATC | 5 cut(s) | 163, 609, 760, 1134, 1438 |
| ScaI | AGTACT | 1 cut(s) | 1434 |
| SduI | GDGCHC | 1 cut(s) | 718 |
| SfaNI | GCATC | 2 cut(s) | 798, 1282 |
| SfcI | CTRYAG | 2 cut(s) | 442, 1447 |
| Sfr274I | CTCGAG | 1 cut(s) | 1491 |
| SlaI | CTCGAG | 1 cut(s) | 1491 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 622, 1062, 1483 |
| SmlI | CTYRAG | 3 cut(s) | 431, 1051, 1491 |
| SmoI | CTYRAG | 3 cut(s) | 431, 1051, 1491 |
| SseBI | AGGCCT | 1 cut(s) | 672 |
| SsiI | CCGC | 1 cut(s) | 1121 |
| SspI | AATATT | 2 cut(s) | 950, 1115 |
| SspMI | CTAG | 5 cut(s) | 87, 98, 599, 1296, 1436 |
| StuI | AGGCCT | 1 cut(s) | 672 |
| StyI | CCWWGG | 2 cut(s) | 1014, 1138 |
| TaaI | ACNGT | 2 cut(s) | 1037, 1448 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 5 cut(s) | 345, 706, 1319, 1492, 1506 |
| TaqII | GACCGA | 1 cut(s) | 1530 |
| TatI | WGTACW | 5 cut(s) | 795, 844, 1418, 1432, 1487 |
| TfiI | GAWTC | 3 cut(s) | 215, 396, 505 |
| TscAI | CASTG | 1 cut(s) | 1171 |
| TseFI | GTSAC | 4 cut(s) | 154, 282, 875, 961 |
| Tsp45I | GTSAC | 4 cut(s) | 154, 282, 875, 961 |
| TspRI | CASTG | 1 cut(s) | 1171 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 587 |
| Vha464I | CTTAAG | 1 cut(s) | 431 |
| VspI | ATTAAT | 1 cut(s) | 18 |
| XapI | RAATTY | 8 cut(s) | 311, 531, 692, 727, 938, 1000, 1286, 1334 |
| XhoI | CTCGAG | 1 cut(s) | 1491 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1160 |
| XspI | CTAG | 5 cut(s) | 87, 98, 599, 1296, 1436 |
| ZrmI | AGTACT | 1 cut(s) | 1434 |
| Zsp2I | ATGCAT | 1 cut(s) | 188 |