Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 382 - 463 | 1.5e-29 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 768 |
| Acc36I | ACCTGC | 1 cut(s) | 231 |
| AciI | CCGC | 2 cut(s) | 216, 1296 |
| AclWI | GGATC | 1 cut(s) | 362 |
| AcsI | RAATTY | 5 cut(s) | 294, 582, 688, 845, 1115 |
| AcuI | CTGAAG | 2 cut(s) | 1416, 1464 |
| AcvI | CACGTG | 1 cut(s) | 1379 |
| AdeI | CACNNNGTG | 1 cut(s) | 716 |
| AfaI | GTAC | 4 cut(s) | 783, 968, 1197, 1260 |
| AflII | CTTAAG | 2 cut(s) | 551, 941 |
| AflIII | ACRYGT | 1 cut(s) | 1376 |
| AgsI | TTSAA | 8 cut(s) | 35, 59, 164, 688, 990, 1106, 1192, 1361 |
| AluBI | AGCT | 5 cut(s) | 136, 401, 550, 1364, 1521 |
| AluI | AGCT | 5 cut(s) | 136, 401, 550, 1364, 1521 |
| Alw21I | GWGCWC | 1 cut(s) | 1342 |
| Alw26I | GTCTC | 1 cut(s) | 345 |
| Alw44I | GTGCAC | 1 cut(s) | 1338 |
| AlwI | GGATC | 1 cut(s) | 362 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1355 |
| ApaLI | GTGCAC | 1 cut(s) | 1338 |
| ApeKI | GCWGC | 3 cut(s) | 398, 1171, 1508 |
| ApoI | RAATTY | 5 cut(s) | 294, 582, 688, 845, 1115 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 137, 169 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 168 |
| AspA2I | CCTAGG | 1 cut(s) | 304 |
| AspS9I | GGNCC | 2 cut(s) | 4, 179 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 809 |
| AvaII | GGWCC | 2 cut(s) | 4, 179 |
| AvrII | CCTAGG | 1 cut(s) | 304 |
| BaeGI | GKGCMC | 1 cut(s) | 1342 |
| BauI | CACGAG | 1 cut(s) | 1251 |
| BbrPI | CACGTG | 1 cut(s) | 1379 |
| Bbv12I | GWGCWC | 1 cut(s) | 1342 |
| BbvI | GCAGC | 3 cut(s) | 410, 1158, 1495 |
| BccI | CCATC | 3 cut(s) | 329, 617, 788 |
| BciVI | GTATCC | 1 cut(s) | 1239 |
| BclI | TGATCA | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 345 |
| BfaI | CTAG | 9 cut(s) | 237, 299, 305, 360, 495, 507, 534, 563, 576 |
| BfmI | CTRYAG | 2 cut(s) | 1005, 1278 |
| BfrI | CTTAAG | 2 cut(s) | 551, 941 |
| BfuAI | ACCTGC | 1 cut(s) | 231 |
| BfuI | GTATCC | 1 cut(s) | 1239 |
| BisI | GCNGC | 3 cut(s) | 399, 1172, 1509 |
| BlnI | CCTAGG | 1 cut(s) | 304 |
| BlsI | GCNGC | 3 cut(s) | 400, 1173, 1510 |
| Bme18I | GGWCC | 2 cut(s) | 4, 179 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 179 |
| BmiI | GGNNCC | 2 cut(s) | 6, 180 |
| BmrI | ACTGGG | 1 cut(s) | 1149 |
| BmsI | GCATC | 6 cut(s) | 66, 113, 203, 734, 1019, 1042 |
| BmuI | ACTGGG | 1 cut(s) | 1149 |
| BpuEI | CTTGAG | 2 cut(s) | 9, 27 |
| BsaAI | YACGTR | 1 cut(s) | 1379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaI | GGTCTC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 2 cut(s) | 304, 1166 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 91, 121 |
| Bse1I | ACTGG | 1 cut(s) | 1144 |
| Bse3DI | GCAATG | 2 cut(s) | 1062, 1477 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseDI | CCNNGG | 2 cut(s) | 304, 1166 |
| BseGI | GGATG | 3 cut(s) | 799, 1084, 1513 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseMI | GCAATG | 2 cut(s) | 1062, 1477 |
| BseMII | CTCAG | 1 cut(s) | 1281 |
| BseNI | ACTGG | 1 cut(s) | 1144 |
| BseRI | GAGGAG | 1 cut(s) | 696 |
| BseSI | GKGCMC | 1 cut(s) | 1342 |
| BseXI | GCAGC | 3 cut(s) | 410, 1158, 1495 |
| BseYI | CCCAGC | 1 cut(s) | 443 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1342 |
| BslFI | GGGAC | 2 cut(s) | 262, 774 |
| BsmAI | GTCTC | 1 cut(s) | 345 |
| BsmFI | GGGAC | 2 cut(s) | 262, 774 |
| BsmI | GAATGC | 1 cut(s) | 1076 |
| Bso31I | GGTCTC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1342 |
| Bsp1407I | TGTACA | 1 cut(s) | 966 |
| Bsp143I | GATC | 3 cut(s) | 49, 345, 367 |
| BspACI | CCGC | 2 cut(s) | 216, 1296 |
| BspCNI | CTCAG | 1 cut(s) | 1282 |
| BspHI | TCATGA | 1 cut(s) | 901 |
| BspLI | GGNNCC | 2 cut(s) | 6, 180 |
| BspMI | ACCTGC | 1 cut(s) | 231 |
| BspPI | GGATC | 1 cut(s) | 362 |
| BspTI | CTTAAG | 2 cut(s) | 551, 941 |
| BspTNI | GGTCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 2 cut(s) | 1062, 1477 |
| BsrGI | TGTACA | 1 cut(s) | 966 |
| BsrI | ACTGG | 1 cut(s) | 1144 |
| BssECI | CCNNGG | 2 cut(s) | 304, 1166 |
| BssMI | GATC | 3 cut(s) | 49, 345, 367 |
| BssSI | CACGAG | 1 cut(s) | 1251 |
| BssT1I | CCWWGG | 2 cut(s) | 304, 1166 |
| Bst2BI | CACGAG | 1 cut(s) | 1251 |
| Bst4CI | ACNGT | 2 cut(s) | 1282, 1357 |
| BstAFI | CTTAAG | 2 cut(s) | 551, 941 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 101, 418, 585 |
| BstAUI | TGTACA | 1 cut(s) | 966 |
| BstBAI | YACGTR | 1 cut(s) | 1379 |
| BstC8I | GCNNGC | 2 cut(s) | 531, 891 |
| BstDEI | CTNAG | 6 cut(s) | 156, 201, 209, 767, 933, 1290 |
| BstF5I | GGATG | 3 cut(s) | 799, 1084, 1513 |
| BstKTI | GATC | 3 cut(s) | 52, 348, 370 |
| BstMAI | GTCTC | 1 cut(s) | 345 |
| BstMBI | GATC | 3 cut(s) | 49, 345, 367 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 101, 133, 213, 418, 585, 641, 1007 |
| BstNSI | RCATGY | 2 cut(s) | 533, 893 |
| BstSFI | CTRYAG | 2 cut(s) | 1005, 1278 |
| BstSLI | GKGCMC | 1 cut(s) | 1342 |
| BstV1I | GCAGC | 3 cut(s) | 410, 1158, 1495 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1139 |
| BsuI | GTATCC | 1 cut(s) | 1239 |
| BtsCI | GGATG | 3 cut(s) | 799, 1084, 1513 |
| BtsI | GCAGTG | 2 cut(s) | 501, 639 |
| BtsIMutI | CAGTG | 2 cut(s) | 501, 639 |
| BveI | ACCTGC | 1 cut(s) | 231 |
| Cac8I | GCNNGC | 2 cut(s) | 531, 891 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1355 |
| CciI | TCATGA | 1 cut(s) | 901 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 179 |
| Csp6I | GTAC | 4 cut(s) | 782, 967, 1196, 1259 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1410, 1445 |
| CviAII | CATG | 7 cut(s) | 80, 413, 530, 890, 902, 970, 1075 |
| CviJI | RGCY | 8 cut(s) | 136, 200, 401, 550, 1171, 1250, 1364, 1521 |
| CviKI_1 | RGCY | 8 cut(s) | 136, 200, 401, 550, 1171, 1250, 1364, 1521 |
| CviQI | GTAC | 4 cut(s) | 782, 967, 1196, 1259 |
| DdeI | CTNAG | 6 cut(s) | 156, 201, 209, 767, 933, 1290 |
| DpnI | GATC | 3 cut(s) | 51, 347, 369 |
| DpnII | GATC | 3 cut(s) | 49, 345, 367 |
| DraIII | CACNNNGTG | 1 cut(s) | 716 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 768 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 768 |
| Eco130I | CCWWGG | 2 cut(s) | 304, 1166 |
| Eco31I | GGTCTC | 1 cut(s) | 345 |
| Eco32I | GATATC | 2 cut(s) | 481, 492 |
| Eco47I | GGWCC | 2 cut(s) | 4, 179 |
| Eco57I | CTGAAG | 2 cut(s) | 1416, 1464 |
| Eco72I | CACGTG | 1 cut(s) | 1379 |
| EcoRV | GATATC | 2 cut(s) | 481, 492 |
| EcoT14I | CCWWGG | 2 cut(s) | 304, 1166 |
| EcoT22I | ATGCAT | 5 cut(s) | 81, 414, 531, 727, 1076 |
| ErhI | CCWWGG | 2 cut(s) | 304, 1166 |
| FaeI | CATG | 7 cut(s) | 83, 416, 533, 893, 905, 973, 1078 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 36, 68 |
| FaqI | GGGAC | 2 cut(s) | 262, 774 |
| FatI | CATG | 7 cut(s) | 79, 412, 529, 889, 901, 969, 1074 |
| FbaI | TGATCA | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 3 cut(s) | 399, 1172, 1509 |
| FokI | GGATG | 3 cut(s) | 806, 1091, 1500 |
| Fsp4HI | GCNGC | 3 cut(s) | 399, 1172, 1509 |
| FspBI | CTAG | 9 cut(s) | 237, 299, 305, 360, 495, 507, 534, 563, 576 |
| GluI | GCNGC | 3 cut(s) | 399, 1172, 1509 |
| GsaI | CCCAGC | 1 cut(s) | 447 |
| Hin1II | CATG | 7 cut(s) | 83, 416, 533, 893, 905, 973, 1078 |
| HindIII | AAGCTT | 1 cut(s) | 548 |
| HinfI | GANTC | 4 cut(s) | 875, 995, 1292, 1484 |
| HphI | GGTGA | 2 cut(s) | 59, 809 |
| Hpy166II | GTNNAC | 4 cut(s) | 386, 606, 827, 1340 |
| Hpy188I | TCNGA | 4 cut(s) | 345, 598, 1291, 1351 |
| Hpy188III | TCNNGA | 9 cut(s) | 26, 182, 299, 371, 383, 902, 1232, 1253, 1322 |
| Hpy8I | GTNNAC | 4 cut(s) | 386, 606, 827, 1340 |
| HpyAV | CCTTC | 3 cut(s) | 828, 1081, 1204 |
| HpyCH4III | ACNGT | 2 cut(s) | 1282, 1357 |
| HpyCH4IV | ACGT | 2 cut(s) | 265, 1378 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 101, 133, 213, 418, 585, 641, 1007 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 201, 209, 767, 933, 1290 |
| HpySE526I | ACGT | 2 cut(s) | 265, 1378 |
| Hsp92II | CATG | 7 cut(s) | 83, 416, 533, 893, 905, 973, 1078 |
| Ksp22I | TGATCA | 1 cut(s) | 345 |
| Kzo9I | GATC | 3 cut(s) | 49, 345, 367 |
| LpnPI | CCDG | 8 cut(s) | 21, 195, 226, 237, 384, 429, 1125, 1245 |
| Lsp1109I | GCAGC | 3 cut(s) | 410, 1158, 1495 |
| LweI | GCATC | 6 cut(s) | 66, 113, 203, 734, 1019, 1042 |
| MaeI | CTAG | 9 cut(s) | 237, 299, 305, 360, 495, 507, 534, 563, 576 |
| MaeII | ACGT | 2 cut(s) | 265, 1378 |
| MaeIII | GTNAC | 2 cut(s) | 716, 872 |
| MalI | GATC | 3 cut(s) | 51, 347, 369 |
| MboI | GATC | 3 cut(s) | 49, 345, 367 |
| MboII | GAAGA | 6 cut(s) | 141, 524, 556, 1124, 1409, 1457 |
| MfeI | CAATTG | 1 cut(s) | 1148 |
| MhlI | GDGCHC | 1 cut(s) | 1342 |
| MlyI | GAGTC | 3 cut(s) | 869, 1301, 1493 |
| MnlI | CCTC | 5 cut(s) | 117, 714, 717, 793, 1012 |
| Mph1103I | ATGCAT | 5 cut(s) | 81, 414, 531, 727, 1076 |
| MroXI | GAANNNNTTC | 1 cut(s) | 168 |
| MseI | TTAA | 6 cut(s) | 552, 810, 869, 942, 1344, 1460 |
| MslI | CAYNNNNRTG | 2 cut(s) | 330, 1191 |
| MspCI | CTTAAG | 2 cut(s) | 551, 941 |
| MunI | CAATTG | 1 cut(s) | 1148 |
| Mva1269I | GAATGC | 1 cut(s) | 1076 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 101, 133, 213, 418, 585, 641, 1007 |
| NdeII | GATC | 3 cut(s) | 49, 345, 367 |
| NlaIII | CATG | 7 cut(s) | 83, 416, 533, 893, 905, 973, 1078 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 180 |
| NmuCI | GTSAC | 2 cut(s) | 716, 872 |
| NsiI | ATGCAT | 5 cut(s) | 81, 414, 531, 727, 1076 |
| NspI | RCATGY | 2 cut(s) | 533, 893 |
| PaeI | GCATGC | 2 cut(s) | 533, 893 |
| PagI | TCATGA | 1 cut(s) | 901 |
| PctI | GAATGC | 1 cut(s) | 1076 |
| PdmI | GAANNNNTTC | 1 cut(s) | 168 |
| PfeI | GAWTC | 1 cut(s) | 995 |
| PflFI | GACNNNGTC | 1 cut(s) | 8 |
| PkrI | GCNGC | 3 cut(s) | 400, 1173, 1510 |
| PleI | GAGTC | 3 cut(s) | 869, 1300, 1492 |
| PmaCI | CACGTG | 1 cut(s) | 1379 |
| PmlI | CACGTG | 1 cut(s) | 1379 |
| PpsI | GAGTC | 3 cut(s) | 869, 1300, 1492 |
| Ppu21I | YACGTR | 1 cut(s) | 1379 |
| PspCI | CACGTG | 1 cut(s) | 1379 |
| PspFI | CCCAGC | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 180 |
| PspPI | GGNCC | 2 cut(s) | 4, 179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1355 |
| PsyI | GACNNNGTC | 1 cut(s) | 8 |
| RsaI | GTAC | 4 cut(s) | 783, 968, 1197, 1260 |
| RsaNI | GTAC | 4 cut(s) | 782, 967, 1196, 1259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 330, 1191 |
| SaqAI | TTAA | 6 cut(s) | 552, 810, 869, 942, 1344, 1460 |
| SatI | GCNGC | 3 cut(s) | 399, 1172, 1509 |
| Sau3AI | GATC | 3 cut(s) | 49, 345, 367 |
| Sau96I | GGNCC | 2 cut(s) | 4, 179 |
| SchI | GAGTC | 3 cut(s) | 869, 1301, 1493 |
| SduI | GDGCHC | 1 cut(s) | 1342 |
| SfaNI | GCATC | 6 cut(s) | 66, 113, 203, 734, 1019, 1042 |
| SfcI | CTRYAG | 2 cut(s) | 1005, 1278 |
| SinI | GGWCC | 2 cut(s) | 4, 179 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 330, 1191 |
| SmlI | CTYRAG | 4 cut(s) | 24, 42, 551, 941 |
| SmoI | CTYRAG | 4 cut(s) | 24, 42, 551, 941 |
| SphI | GCATGC | 2 cut(s) | 533, 893 |
| SsiI | CCGC | 2 cut(s) | 216, 1296 |
| SspI | AATATT | 1 cut(s) | 684 |
| SspMI | CTAG | 9 cut(s) | 237, 299, 305, 360, 495, 507, 534, 563, 576 |
| StyI | CCWWGG | 2 cut(s) | 304, 1166 |
| TaaI | ACNGT | 2 cut(s) | 1282, 1357 |
| TaiI | ACGT | 2 cut(s) | 268, 1381 |
| TatI | WGTACW | 4 cut(s) | 781, 966, 1195, 1258 |
| TfiI | GAWTC | 1 cut(s) | 995 |
| Tru1I | TTAA | 6 cut(s) | 552, 810, 869, 942, 1344, 1460 |
| Tru9I | TTAA | 6 cut(s) | 552, 810, 869, 942, 1344, 1460 |
| TscAI | CASTG | 2 cut(s) | 508, 646 |
| TseFI | GTSAC | 2 cut(s) | 716, 872 |
| TseI | GCWGC | 3 cut(s) | 398, 1171, 1508 |
| Tsp45I | GTSAC | 2 cut(s) | 716, 872 |
| TspDTI | ATGAA | 7 cut(s) | 275, 536, 557, 968, 1100, 1176, 1400 |
| TspRI | CASTG | 2 cut(s) | 508, 646 |
| Tth111I | GACNNNGTC | 1 cut(s) | 8 |
| Vha464I | CTTAAG | 2 cut(s) | 551, 941 |
| VneI | GTGCAC | 1 cut(s) | 1338 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 179 |
| XapI | RAATTY | 5 cut(s) | 294, 582, 688, 845, 1115 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XceI | RCATGY | 2 cut(s) | 533, 893 |
| XmaJI | CCTAGG | 1 cut(s) | 304 |
| XmnI | GAANNNNTTC | 1 cut(s) | 168 |
| XspI | CTAG | 9 cut(s) | 237, 299, 305, 360, 495, 507, 534, 563, 576 |
| Zsp2I | ATGCAT | 5 cut(s) | 81, 414, 531, 727, 1076 |