Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 265 - 377 | 1.3e-08 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1167 |
| Acc36I | ACCTGC | 1 cut(s) | 1167 |
| AccB1I | GGYRCC | 1 cut(s) | 874 |
| AccI | GTMKAC | 1 cut(s) | 1153 |
| AclWI | GGATC | 1 cut(s) | 901 |
| AcuI | CTGAAG | 2 cut(s) | 627, 1074 |
| AfaI | GTAC | 4 cut(s) | 550, 681, 796, 956 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 60, 509, 722 |
| AflIII | ACRYGT | 1 cut(s) | 864 |
| AhlI | ACTAGT | 1 cut(s) | 65 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 854, 886 |
| AluBI | AGCT | 5 cut(s) | 190, 499, 572, 1182, 1237 |
| AluI | AGCT | 5 cut(s) | 190, 499, 572, 1182, 1237 |
| Alw21I | GWGCWC | 1 cut(s) | 819 |
| Alw26I | GTCTC | 1 cut(s) | 535 |
| Alw44I | GTGCAC | 1 cut(s) | 815 |
| AlwI | GGATC | 1 cut(s) | 901 |
| AoxI | GGCC | 2 cut(s) | 997, 1231 |
| ApaLI | GTGCAC | 1 cut(s) | 815 |
| ApeKI | GCWGC | 4 cut(s) | 569, 926, 1168, 1237 |
| AseI | ATTAAT | 1 cut(s) | 144 |
| AspS9I | GGNCC | 1 cut(s) | 710 |
| AvaII | GGWCC | 1 cut(s) | 710 |
| BaeGI | GKGCMC | 1 cut(s) | 819 |
| BanI | GGYRCC | 1 cut(s) | 874 |
| BbsI | GAAGAC | 1 cut(s) | 485 |
| Bbv12I | GWGCWC | 1 cut(s) | 819 |
| BbvCI | CCTCAGC | 1 cut(s) | 741 |
| BbvI | GCAGC | 4 cut(s) | 581, 938, 1180, 1224 |
| BccI | CCATC | 5 cut(s) | 595, 662, 910, 939, 1139 |
| BclI | TGATCA | 1 cut(s) | 987 |
| BcoDI | GTCTC | 1 cut(s) | 535 |
| BcuI | ACTAGT | 1 cut(s) | 65 |
| BfaI | CTAG | 6 cut(s) | 66, 537, 647, 888, 942, 1191 |
| BfuAI | ACCTGC | 1 cut(s) | 1167 |
| BglII | AGATCT | 2 cut(s) | 446, 938 |
| BisI | GCNGC | 4 cut(s) | 570, 927, 1169, 1238 |
| BlsI | GCNGC | 4 cut(s) | 571, 928, 1170, 1239 |
| BmcAI | AGTACT | 1 cut(s) | 956 |
| Bme18I | GGWCC | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 1 cut(s) | 710 |
| BmiI | GGNNCC | 1 cut(s) | 876 |
| BmsI | GCATC | 4 cut(s) | 117, 317, 341, 1000 |
| BpiI | GAAGAC | 1 cut(s) | 485 |
| BpmI | CTGGAG | 1 cut(s) | 699 |
| Bpu10I | CCTNAGC | 1 cut(s) | 741 |
| BsaBI | GATNNNNATC | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 1 cut(s) | 843 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 60, 509, 722 |
| Bse3DI | GCAATG | 1 cut(s) | 800 |
| Bse8I | GATNNNNATC | 1 cut(s) | 672 |
| BseDI | CCNNGG | 1 cut(s) | 843 |
| BseGI | GGATG | 1 cut(s) | 532 |
| BseJI | GATNNNNATC | 1 cut(s) | 672 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 60, 509, 722 |
| BseMI | GCAATG | 1 cut(s) | 800 |
| BseMII | CTCAG | 2 cut(s) | 732, 870 |
| BseRI | GAGGAG | 1 cut(s) | 1236 |
| BseSI | GKGCMC | 1 cut(s) | 819 |
| BseXI | GCAGC | 4 cut(s) | 581, 938, 1180, 1224 |
| BsgI | GTGCAG | 1 cut(s) | 1097 |
| BshFI | GGCC | 2 cut(s) | 999, 1233 |
| BshNI | GGYRCC | 1 cut(s) | 874 |
| BsiHKAI | GWGCWC | 1 cut(s) | 819 |
| BslFI | GGGAC | 1 cut(s) | 525 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 60, 509, 722 |
| BsmAI | GTCTC | 1 cut(s) | 535 |
| BsmFI | GGGAC | 1 cut(s) | 525 |
| BsmI | GAATGC | 1 cut(s) | 433 |
| BsnI | GGCC | 2 cut(s) | 999, 1233 |
| Bsp1286I | GDGCHC | 1 cut(s) | 819 |
| Bsp143I | GATC | 4 cut(s) | 446, 893, 938, 987 |
| Bsp19I | CCATGG | 1 cut(s) | 843 |
| BspANI | GGCC | 2 cut(s) | 999, 1233 |
| BspCNI | CTCAG | 2 cut(s) | 733, 871 |
| BspHI | TCATGA | 1 cut(s) | 970 |
| BspLI | GGNNCC | 1 cut(s) | 876 |
| BspMI | ACCTGC | 1 cut(s) | 1167 |
| BspPI | GGATC | 1 cut(s) | 901 |
| BspQI | GCTCTTC | 1 cut(s) | 1189 |
| BspT107I | GGYRCC | 1 cut(s) | 874 |
| BsrDI | GCAATG | 1 cut(s) | 800 |
| BssECI | CCNNGG | 1 cut(s) | 843 |
| BssMI | GATC | 4 cut(s) | 446, 893, 938, 987 |
| BssT1I | CCWWGG | 1 cut(s) | 843 |
| Bst4CI | ACNGT | 3 cut(s) | 244, 484, 814 |
| Bst6I | CTCTTC | 1 cut(s) | 1189 |
| BstC8I | GCNNGC | 1 cut(s) | 1235 |
| BstDEI | CTNAG | 3 cut(s) | 741, 761, 879 |
| BstDSI | CCRYGG | 1 cut(s) | 843 |
| BstF5I | GGATG | 1 cut(s) | 532 |
| BstKTI | GATC | 4 cut(s) | 449, 896, 941, 990 |
| BstMAI | GTCTC | 1 cut(s) | 535 |
| BstMBI | GATC | 4 cut(s) | 446, 893, 938, 987 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1168 |
| BstNSI | RCATGY | 3 cut(s) | 343, 347, 868 |
| BstSLI | GKGCMC | 1 cut(s) | 819 |
| BstV1I | GCAGC | 4 cut(s) | 581, 938, 1180, 1224 |
| BstV2I | GAAGAC | 1 cut(s) | 485 |
| BstX2I | RGATCY | 2 cut(s) | 446, 938 |
| BstYI | RGATCY | 2 cut(s) | 446, 938 |
| BsuRI | GGCC | 2 cut(s) | 999, 1233 |
| BtgI | CCRYGG | 1 cut(s) | 843 |
| BtsCI | GGATG | 1 cut(s) | 532 |
| BtsI | GCAGTG | 4 cut(s) | 354, 438, 1278, 1286 |
| BtsIMutI | CAGTG | 5 cut(s) | 354, 438, 810, 1278, 1286 |
| BveI | ACCTGC | 1 cut(s) | 1167 |
| Cac8I | GCNNGC | 1 cut(s) | 1235 |
| CciI | TCATGA | 1 cut(s) | 970 |
| Cfr13I | GGNCC | 1 cut(s) | 710 |
| Csp6I | GTAC | 4 cut(s) | 549, 680, 795, 955 |
| CviQI | GTAC | 4 cut(s) | 549, 680, 795, 955 |
| DdeI | CTNAG | 3 cut(s) | 741, 761, 879 |
| DpnI | GATC | 4 cut(s) | 448, 895, 940, 989 |
| DpnII | GATC | 4 cut(s) | 446, 893, 938, 987 |
| Eam1104I | CTCTTC | 1 cut(s) | 1189 |
| EarI | CTCTTC | 1 cut(s) | 1189 |
| Eco130I | CCWWGG | 1 cut(s) | 843 |
| Eco47I | GGWCC | 1 cut(s) | 710 |
| Eco57I | CTGAAG | 2 cut(s) | 627, 1074 |
| EcoT14I | CCWWGG | 1 cut(s) | 843 |
| EcoT22I | ATGCAT | 1 cut(s) | 345 |
| ErhI | CCWWGG | 1 cut(s) | 843 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1118, 1150 |
| FaqI | GGGAC | 1 cut(s) | 525 |
| FbaI | TGATCA | 1 cut(s) | 987 |
| FblI | GTMKAC | 1 cut(s) | 1153 |
| Fnu4HI | GCNGC | 4 cut(s) | 570, 927, 1169, 1238 |
| FokI | GGATG | 1 cut(s) | 539 |
| Fsp4HI | GCNGC | 4 cut(s) | 570, 927, 1169, 1238 |
| FspBI | CTAG | 6 cut(s) | 66, 537, 647, 888, 942, 1191 |
| GluI | GCNGC | 4 cut(s) | 570, 927, 1169, 1238 |
| GsuI | CTGGAG | 1 cut(s) | 699 |
| HaeIII | GGCC | 2 cut(s) | 999, 1233 |
| HindIII | AAGCTT | 2 cut(s) | 188, 497 |
| HinfI | GANTC | 3 cut(s) | 157, 197, 1036 |
| Hpy166II | GTNNAC | 2 cut(s) | 817, 1154 |
| Hpy188I | TCNGA | 1 cut(s) | 898 |
| Hpy188III | TCNNGA | 4 cut(s) | 583, 716, 942, 971 |
| Hpy8I | GTNNAC | 2 cut(s) | 817, 1154 |
| HpyAV | CCTTC | 3 cut(s) | 730, 1049, 1115 |
| HpyCH4III | ACNGT | 3 cut(s) | 244, 484, 814 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1168 |
| HpyF3I | CTNAG | 3 cut(s) | 741, 761, 879 |
| Ksp22I | TGATCA | 1 cut(s) | 987 |
| Kzo9I | GATC | 4 cut(s) | 446, 893, 938, 987 |
| LguI | GCTCTTC | 1 cut(s) | 1189 |
| LpnPI | CCDG | 5 cut(s) | 729, 891, 1172, 1225, 1247 |
| Lsp1109I | GCAGC | 4 cut(s) | 581, 938, 1180, 1224 |
| LweI | GCATC | 4 cut(s) | 117, 317, 341, 1000 |
| MaeI | CTAG | 6 cut(s) | 66, 537, 647, 888, 942, 1191 |
| MaeIII | GTNAC | 2 cut(s) | 778, 1033 |
| MalI | GATC | 4 cut(s) | 448, 895, 940, 989 |
| MboI | GATC | 4 cut(s) | 446, 893, 938, 987 |
| MflI | RGATCY | 2 cut(s) | 446, 938 |
| MhlI | GDGCHC | 1 cut(s) | 819 |
| MluCI | AATT | 8 cut(s) | 82, 145, 219, 420, 622, 900, 1095, 1197 |
| MlyI | GAGTC | 2 cut(s) | 206, 1030 |
| MmeI | TCCRAC | 2 cut(s) | 543, 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 345 |
| MseI | TTAA | 8 cut(s) | 41, 144, 246, 374, 392, 474, 950, 1098 |
| MslI | CAYNNNNRTG | 1 cut(s) | 344 |
| MspA1I | CMGCKG | 1 cut(s) | 1237 |
| Mva1269I | GAATGC | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1168 |
| NcoI | CCATGG | 1 cut(s) | 843 |
| NdeII | GATC | 4 cut(s) | 446, 893, 938, 987 |
| NlaIV | GGNNCC | 1 cut(s) | 876 |
| NmuCI | GTSAC | 2 cut(s) | 778, 1033 |
| NsiI | ATGCAT | 1 cut(s) | 345 |
| NspI | RCATGY | 3 cut(s) | 343, 347, 868 |
| PagI | TCATGA | 1 cut(s) | 970 |
| PaqCI | CACCTGC | 1 cut(s) | 1167 |
| PciI | ACATGT | 1 cut(s) | 864 |
| PciSI | GCTCTTC | 1 cut(s) | 1189 |
| PctI | GAATGC | 1 cut(s) | 433 |
| PfeI | GAWTC | 1 cut(s) | 157 |
| PkrI | GCNGC | 4 cut(s) | 571, 928, 1170, 1239 |
| PleI | GAGTC | 2 cut(s) | 205, 1030 |
| PpsI | GAGTC | 2 cut(s) | 205, 1030 |
| PscI | ACATGT | 1 cut(s) | 864 |
| PshBI | ATTAAT | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 1 cut(s) | 876 |
| PspPI | GGNCC | 1 cut(s) | 710 |
| PsuI | RGATCY | 2 cut(s) | 446, 938 |
| PvuII | CAGCTG | 1 cut(s) | 1237 |
| RsaI | GTAC | 4 cut(s) | 550, 681, 796, 956 |
| RsaNI | GTAC | 4 cut(s) | 549, 680, 795, 955 |
| RseI | CAYNNNNRTG | 1 cut(s) | 344 |
| SapI | GCTCTTC | 1 cut(s) | 1189 |
| SaqAI | TTAA | 8 cut(s) | 41, 144, 246, 374, 392, 474, 950, 1098 |
| SatI | GCNGC | 4 cut(s) | 570, 927, 1169, 1238 |
| Sau3AI | GATC | 4 cut(s) | 446, 893, 938, 987 |
| Sau96I | GGNCC | 1 cut(s) | 710 |
| ScaI | AGTACT | 1 cut(s) | 956 |
| SchI | GAGTC | 2 cut(s) | 206, 1030 |
| SduI | GDGCHC | 1 cut(s) | 819 |
| SfaNI | GCATC | 4 cut(s) | 117, 317, 341, 1000 |
| SinI | GGWCC | 1 cut(s) | 710 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 344 |
| SpeI | ACTAGT | 1 cut(s) | 65 |
| Sse9I | AATT | 8 cut(s) | 82, 145, 219, 420, 622, 900, 1095, 1197 |
| SspI | AATATT | 1 cut(s) | 912 |
| SspMI | CTAG | 6 cut(s) | 66, 537, 647, 888, 942, 1191 |
| StyI | CCWWGG | 1 cut(s) | 843 |
| TaaI | ACNGT | 3 cut(s) | 244, 484, 814 |
| TasI | AATT | 8 cut(s) | 82, 145, 219, 420, 622, 900, 1095, 1197 |
| TatI | WGTACW | 2 cut(s) | 794, 954 |
| TfiI | GAWTC | 1 cut(s) | 157 |
| Tru1I | TTAA | 8 cut(s) | 41, 144, 246, 374, 392, 474, 950, 1098 |
| Tru9I | TTAA | 8 cut(s) | 41, 144, 246, 374, 392, 474, 950, 1098 |
| TscAI | CASTG | 5 cut(s) | 361, 438, 817, 1278, 1286 |
| TseFI | GTSAC | 2 cut(s) | 778, 1033 |
| TseI | GCWGC | 4 cut(s) | 569, 926, 1168, 1237 |
| Tsp45I | GTSAC | 2 cut(s) | 778, 1033 |
| TspDTI | ATGAA | 7 cut(s) | 97, 311, 627, 678, 954, 959, 987 |
| TspRI | CASTG | 5 cut(s) | 361, 438, 817, 1278, 1286 |
| VneI | GTGCAC | 1 cut(s) | 815 |
| VpaK11BI | GGWCC | 1 cut(s) | 710 |
| VspI | ATTAAT | 1 cut(s) | 144 |
| XbaI | TCTAGA | 1 cut(s) | 941 |
| XceI | RCATGY | 3 cut(s) | 343, 347, 868 |
| XmiI | GTMKAC | 1 cut(s) | 1153 |
| XspI | CTAG | 6 cut(s) | 66, 537, 647, 888, 942, 1191 |
| ZrmI | AGTACT | 1 cut(s) | 956 |
| Zsp2I | ATGCAT | 1 cut(s) | 345 |