Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 308 - 350 | 9.8e-14 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 347 |
| AatII | GACGTC | 2 cut(s) | 597, 722 |
| Acc36I | ACCTGC | 1 cut(s) | 472 |
| AccB1I | GGYRCC | 2 cut(s) | 602, 632 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AccI | GTMKAC | 3 cut(s) | 351, 716, 934 |
| AciI | CCGC | 6 cut(s) | 424, 692, 698, 839, 842, 1169 |
| AclWI | GGATC | 1 cut(s) | 77 |
| AcyI | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| AfaI | GTAC | 2 cut(s) | 804, 999 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 106, 704 |
| AgsI | TTSAA | 4 cut(s) | 97, 461, 797, 1294 |
| AjnI | CCWGG | 2 cut(s) | 99, 1008 |
| AluBI | AGCT | 6 cut(s) | 274, 421, 558, 809, 1120, 1178 |
| AluI | AGCT | 6 cut(s) | 274, 421, 558, 809, 1120, 1178 |
| Alw26I | GTCTC | 1 cut(s) | 758 |
| AlwI | GGATC | 1 cut(s) | 77 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 106, 1181 |
| Ama87I | CYCGRG | 1 cut(s) | 569 |
| AoxI | GGCC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 5 cut(s) | 345, 738, 960, 1178, 1181 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 396 |
| AspLEI | GCGC | 2 cut(s) | 605, 635 |
| AspS9I | GGNCC | 1 cut(s) | 1325 |
| AsuC2I | CCSGG | 1 cut(s) | 372 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 43 |
| AsuNHI | GCTAGC | 2 cut(s) | 274, 662 |
| AvaI | CYCGRG | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 1325 |
| BanI | GGYRCC | 2 cut(s) | 602, 632 |
| BbsI | GAAGAC | 4 cut(s) | 31, 714, 795, 956 |
| BbvCI | CCTCAGC | 1 cut(s) | 296 |
| BbvI | GCAGC | 5 cut(s) | 357, 725, 947, 1165, 1168 |
| BccI | CCATC | 5 cut(s) | 70, 152, 280, 645, 1219 |
| BceAI | ACGGC | 2 cut(s) | 751, 1301 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 344, 378 |
| BciT130I | CCWGG | 2 cut(s) | 101, 1010 |
| BciVI | GTATCC | 2 cut(s) | 234, 978 |
| BcnI | CCSGG | 1 cut(s) | 372 |
| BcoDI | GTCTC | 1 cut(s) | 758 |
| BfaI | CTAG | 7 cut(s) | 275, 413, 663, 849, 872, 884, 1047 |
| BfoI | RGCGCY | 2 cut(s) | 606, 636 |
| BfuAI | ACCTGC | 1 cut(s) | 472 |
| BfuI | GTATCC | 2 cut(s) | 234, 978 |
| BisI | GCNGC | 7 cut(s) | 346, 739, 840, 961, 1170, 1179, 1182 |
| BlsI | GCNGC | 7 cut(s) | 347, 740, 841, 962, 1171, 1180, 1183 |
| Bme1390I | CCNGG | 3 cut(s) | 101, 372, 1010 |
| Bme18I | GGWCC | 1 cut(s) | 1325 |
| BmeT110I | CYCGRG | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 1 cut(s) | 1325 |
| BmiI | GGNNCC | 4 cut(s) | 604, 634, 903, 1326 |
| BmrFI | CCNGG | 3 cut(s) | 101, 372, 1010 |
| BmrI | ACTGGG | 1 cut(s) | 777 |
| BmsI | GCATC | 7 cut(s) | 282, 679, 843, 1034, 1045, 1243, 1244 |
| BmtI | GCTAGC | 2 cut(s) | 278, 666 |
| BmuI | ACTGGG | 1 cut(s) | 777 |
| BpiI | GAAGAC | 4 cut(s) | 31, 714, 795, 956 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 563, 595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 296 |
| BpuMI | CCSGG | 1 cut(s) | 372 |
| BsaHI | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| BsaJI | CCNNGG | 1 cut(s) | 1317 |
| BsaWI | WCCGGW | 1 cut(s) | 704 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 106, 704 |
| Bse1I | ACTGG | 6 cut(s) | 33, 71, 111, 310, 634, 772 |
| BseBI | CCWGG | 2 cut(s) | 101, 1010 |
| BseDI | CCNNGG | 1 cut(s) | 1317 |
| BseGI | GGATG | 6 cut(s) | 81, 196, 306, 858, 1000, 1025 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 106, 704 |
| BseMII | CTCAG | 7 cut(s) | 287, 442, 694, 795, 824, 830, 1325 |
| BseNI | ACTGG | 6 cut(s) | 33, 71, 111, 310, 634, 772 |
| BseRI | GAGGAG | 1 cut(s) | 573 |
| BseXI | GCAGC | 5 cut(s) | 357, 725, 947, 1165, 1168 |
| BseYI | CCCAGC | 1 cut(s) | 1203 |
| Bsh1285I | CGRYCG | 2 cut(s) | 61, 654 |
| BshFI | GGCC | 1 cut(s) | 122 |
| BshNI | GGYRCC | 2 cut(s) | 602, 632 |
| BsiEI | CGRYCG | 2 cut(s) | 61, 654 |
| BsiHKCI | CYCGRG | 1 cut(s) | 569 |
| BsiSI | CCGG | 2 cut(s) | 372, 705 |
| BslFI | GGGAC | 1 cut(s) | 1186 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 106, 704 |
| BsmAI | GTCTC | 1 cut(s) | 758 |
| BsmFI | GGGAC | 1 cut(s) | 1186 |
| BsnI | GGCC | 1 cut(s) | 122 |
| BsoBI | CYCGRG | 1 cut(s) | 569 |
| Bsp143I | GATC | 3 cut(s) | 58, 69, 651 |
| BspACI | CCGC | 6 cut(s) | 424, 692, 698, 839, 842, 1169 |
| BspANI | GGCC | 1 cut(s) | 122 |
| BspCNI | CTCAG | 7 cut(s) | 288, 441, 693, 794, 823, 829, 1326 |
| BspLI | GGNNCC | 4 cut(s) | 604, 634, 903, 1326 |
| BspMI | ACCTGC | 1 cut(s) | 472 |
| BspOI | GCTAGC | 2 cut(s) | 278, 666 |
| BspPI | GGATC | 1 cut(s) | 77 |
| BspT107I | GGYRCC | 2 cut(s) | 602, 632 |
| BsrI | ACTGG | 6 cut(s) | 33, 71, 111, 310, 634, 772 |
| BssECI | CCNNGG | 1 cut(s) | 1317 |
| BssMI | GATC | 3 cut(s) | 58, 69, 651 |
| BssNI | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| Bst2UI | CCWGG | 2 cut(s) | 101, 1010 |
| Bst4CI | ACNGT | 2 cut(s) | 538, 1021 |
| Bst6I | CTCTTC | 4 cut(s) | 9, 509, 647, 680 |
| BstACI | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1178 |
| BstC8I | GCNNGC | 5 cut(s) | 276, 601, 664, 668, 1209 |
| BstDSI | CCRYGG | 1 cut(s) | 1317 |
| BstF5I | GGATG | 6 cut(s) | 81, 196, 306, 858, 1000, 1025 |
| BstH2I | RGCGCY | 2 cut(s) | 606, 636 |
| BstHHI | GCGC | 2 cut(s) | 605, 635 |
| BstKTI | GATC | 3 cut(s) | 61, 72, 654 |
| BstMAI | GTCTC | 1 cut(s) | 758 |
| BstMBI | GATC | 3 cut(s) | 58, 69, 651 |
| BstMCI | CGRYCG | 2 cut(s) | 61, 654 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 845, 986, 1175, 1178 |
| BstNI | CCWGG | 2 cut(s) | 101, 1010 |
| BstSCI | CCNGG | 3 cut(s) | 99, 370, 1008 |
| BstV1I | GCAGC | 5 cut(s) | 357, 725, 947, 1165, 1168 |
| BstV2I | GAAGAC | 4 cut(s) | 31, 714, 795, 956 |
| BstX2I | RGATCY | 1 cut(s) | 69 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 151, 286 |
| BstYI | RGATCY | 1 cut(s) | 69 |
| BsuI | GTATCC | 2 cut(s) | 234, 978 |
| BsuRI | GGCC | 1 cut(s) | 122 |
| BtgI | CCRYGG | 1 cut(s) | 1317 |
| BtsCI | GGATG | 6 cut(s) | 81, 196, 306, 858, 1000, 1025 |
| BtsIMutI | CAGTG | 1 cut(s) | 104 |
| BveI | ACCTGC | 1 cut(s) | 472 |
| Cac8I | GCNNGC | 5 cut(s) | 276, 601, 664, 668, 1209 |
| CaiI | CAGNNNCTG | 2 cut(s) | 106, 1181 |
| CfoI | GCGC | 2 cut(s) | 605, 635 |
| Cfr13I | GGNCC | 1 cut(s) | 1325 |
| CseI | GACGC | 3 cut(s) | 337, 365, 668 |
| Csp6I | GTAC | 2 cut(s) | 803, 998 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 491, 526 |
| CviAII | CATG | 3 cut(s) | 52, 383, 485 |
| CviQI | GTAC | 2 cut(s) | 803, 998 |
| DinI | GGCGCC | 2 cut(s) | 604, 634 |
| DpnI | GATC | 3 cut(s) | 60, 71, 653 |
| DpnII | GATC | 3 cut(s) | 58, 69, 651 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 347 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 347 |
| Eam1104I | CTCTTC | 4 cut(s) | 9, 509, 647, 680 |
| EarI | CTCTTC | 4 cut(s) | 9, 509, 647, 680 |
| EciI | GGCGGA | 3 cut(s) | 413, 687, 857 |
| Eco47I | GGWCC | 1 cut(s) | 1325 |
| Eco88I | CYCGRG | 1 cut(s) | 569 |
| EcoRII | CCWGG | 2 cut(s) | 99, 1008 |
| EgeI | GGCGCC | 2 cut(s) | 604, 634 |
| EheI | GGCGCC | 2 cut(s) | 604, 634 |
| FaeI | CATG | 3 cut(s) | 55, 386, 488 |
| FaiI | YATR | 8 cut(s) | 53, 88, 129, 363, 384, 486, 495, 1044 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1104, 1136 |
| FaqI | GGGAC | 1 cut(s) | 1186 |
| FatI | CATG | 3 cut(s) | 51, 382, 484 |
| FblI | GTMKAC | 3 cut(s) | 351, 716, 934 |
| Fnu4HI | GCNGC | 7 cut(s) | 346, 739, 840, 961, 1170, 1179, 1182 |
| FokI | GGATG | 6 cut(s) | 88, 183, 313, 865, 1007, 1012 |
| Fsp4HI | GCNGC | 7 cut(s) | 346, 739, 840, 961, 1170, 1179, 1182 |
| FspBI | CTAG | 7 cut(s) | 275, 413, 663, 849, 872, 884, 1047 |
| GlaI | GCGC | 2 cut(s) | 604, 634 |
| GluI | GCNGC | 7 cut(s) | 346, 739, 840, 961, 1170, 1179, 1182 |
| GsaI | CCCAGC | 1 cut(s) | 1207 |
| HaeII | RGCGCY | 2 cut(s) | 606, 636 |
| HaeIII | GGCC | 1 cut(s) | 122 |
| HapII | CCGG | 2 cut(s) | 372, 705 |
| HgaI | GACGC | 3 cut(s) | 337, 365, 668 |
| HhaI | GCGC | 2 cut(s) | 605, 635 |
| Hin1I | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| Hin1II | CATG | 3 cut(s) | 55, 386, 488 |
| Hin6I | GCGC | 2 cut(s) | 603, 633 |
| HinP1I | GCGC | 2 cut(s) | 603, 633 |
| HincII | GTYRAC | 2 cut(s) | 352, 717 |
| HindII | GTYRAC | 2 cut(s) | 352, 717 |
| HindIII | AAGCTT | 1 cut(s) | 1118 |
| HinfI | GANTC | 6 cut(s) | 454, 572, 779, 814, 1031, 1330 |
| HpaII | CCGG | 2 cut(s) | 372, 705 |
| HphI | GGTGA | 2 cut(s) | 31, 43 |
| Hpy166II | GTNNAC | 5 cut(s) | 39, 319, 352, 717, 935 |
| Hpy188I | TCNGA | 9 cut(s) | 453, 757, 784, 813, 819, 1030, 1135, 1329, 1335 |
| Hpy188III | TCNNGA | 7 cut(s) | 62, 73, 458, 569, 587, 619, 649 |
| Hpy8I | GTNNAC | 5 cut(s) | 39, 319, 352, 717, 935 |
| HpyAV | CCTTC | 4 cut(s) | 14, 586, 1048, 1075 |
| HpyCH4III | ACNGT | 2 cut(s) | 538, 1021 |
| HpyCH4IV | ACGT | 2 cut(s) | 594, 719 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 191, 467, 963, 1025, 1058, 1211, 1235 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 845, 986, 1175, 1178 |
| HpySE526I | ACGT | 2 cut(s) | 594, 719 |
| Hsp92I | GRCGYC | 5 cut(s) | 357, 594, 603, 633, 719 |
| Hsp92II | CATG | 3 cut(s) | 55, 386, 488 |
| HspAI | GCGC | 2 cut(s) | 603, 633 |
| KasI | GGCGCC | 2 cut(s) | 602, 632 |
| Kzo9I | GATC | 3 cut(s) | 58, 69, 651 |
| LmnI | GCTCC | 1 cut(s) | 426 |
| Lsp1109I | GCAGC | 5 cut(s) | 357, 725, 947, 1165, 1168 |
| LweI | GCATC | 7 cut(s) | 282, 679, 843, 1034, 1045, 1243, 1244 |
| MaeI | CTAG | 7 cut(s) | 275, 413, 663, 849, 872, 884, 1047 |
| MaeII | ACGT | 2 cut(s) | 594, 719 |
| MaeIII | GTNAC | 3 cut(s) | 62, 520, 773 |
| MalI | GATC | 3 cut(s) | 60, 71, 653 |
| MboI | GATC | 3 cut(s) | 58, 69, 651 |
| MfeI | CAATTG | 1 cut(s) | 894 |
| MflI | RGATCY | 1 cut(s) | 69 |
| MluCI | AATT | 4 cut(s) | 894, 1258, 1274, 1301 |
| Mly113I | GGCGCC | 2 cut(s) | 603, 633 |
| MlyI | GAGTC | 5 cut(s) | 581, 773, 808, 1040, 1339 |
| MmeI | TCCRAC | 1 cut(s) | 218 |
| MroXI | GAANNNNTTC | 1 cut(s) | 396 |
| MseI | TTAA | 3 cut(s) | 9, 479, 1218 |
| MslI | CAYNNNNRTG | 1 cut(s) | 149 |
| MspA1I | CMGCKG | 1 cut(s) | 1178 |
| MspI | CCGG | 2 cut(s) | 372, 705 |
| MspR9I | CCNGG | 3 cut(s) | 101, 372, 1010 |
| MunI | CAATTG | 1 cut(s) | 894 |
| MvaI | CCWGG | 2 cut(s) | 101, 1010 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 845, 986, 1175, 1178 |
| NarI | GGCGCC | 2 cut(s) | 603, 633 |
| NciI | CCSGG | 1 cut(s) | 372 |
| NdeII | GATC | 3 cut(s) | 58, 69, 651 |
| NheI | GCTAGC | 2 cut(s) | 274, 662 |
| NlaIII | CATG | 3 cut(s) | 55, 386, 488 |
| NlaIV | GGNNCC | 4 cut(s) | 604, 634, 903, 1326 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PaeR7I | CTCGAG | 1 cut(s) | 569 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 567, 1244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 396 |
| PfeI | GAWTC | 1 cut(s) | 454 |
| PflFI | GACNNNGTC | 1 cut(s) | 593 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PkrI | GCNGC | 7 cut(s) | 347, 740, 841, 962, 1171, 1180, 1183 |
| Ple19I | CGATCG | 2 cut(s) | 61, 654 |
| PleI | GAGTC | 5 cut(s) | 580, 773, 808, 1039, 1338 |
| PluTI | GGCGCC | 2 cut(s) | 606, 636 |
| PpsI | GAGTC | 5 cut(s) | 580, 773, 808, 1039, 1338 |
| Psp6I | CCWGG | 2 cut(s) | 99, 1008 |
| PspFI | CCCAGC | 1 cut(s) | 1203 |
| PspGI | CCWGG | 2 cut(s) | 99, 1008 |
| PspN4I | GGNNCC | 4 cut(s) | 604, 634, 903, 1326 |
| PspPI | GGNCC | 1 cut(s) | 1325 |
| PstNI | CAGNNNCTG | 2 cut(s) | 106, 1181 |
| PsuI | RGATCY | 1 cut(s) | 69 |
| PsyI | GACNNNGTC | 1 cut(s) | 593 |
| PvuI | CGATCG | 2 cut(s) | 61, 654 |
| PvuII | CAGCTG | 1 cut(s) | 1178 |
| RsaI | GTAC | 2 cut(s) | 804, 999 |
| RsaNI | GTAC | 2 cut(s) | 803, 998 |
| RseI | CAYNNNNRTG | 1 cut(s) | 149 |
| SalI | GTCGAC | 2 cut(s) | 350, 715 |
| SaqAI | TTAA | 3 cut(s) | 9, 479, 1218 |
| SatI | GCNGC | 7 cut(s) | 346, 739, 840, 961, 1170, 1179, 1182 |
| Sau3AI | GATC | 3 cut(s) | 58, 69, 651 |
| Sau96I | GGNCC | 1 cut(s) | 1325 |
| SchI | GAGTC | 5 cut(s) | 581, 773, 808, 1040, 1339 |
| ScrFI | CCNGG | 3 cut(s) | 101, 372, 1010 |
| SfaNI | GCATC | 7 cut(s) | 282, 679, 843, 1034, 1045, 1243, 1244 |
| SfoI | GGCGCC | 2 cut(s) | 604, 634 |
| Sfr274I | CTCGAG | 1 cut(s) | 569 |
| SgrDI | CGTCGACG | 1 cut(s) | 350 |
| SinI | GGWCC | 1 cut(s) | 1325 |
| SlaI | CTCGAG | 1 cut(s) | 569 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 149 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| Sse9I | AATT | 4 cut(s) | 894, 1258, 1274, 1301 |
| SsiI | CCGC | 6 cut(s) | 424, 692, 698, 839, 842, 1169 |
| SspDI | GGCGCC | 2 cut(s) | 602, 632 |
| SspMI | CTAG | 7 cut(s) | 275, 413, 663, 849, 872, 884, 1047 |
| StyD4I | CCNGG | 3 cut(s) | 99, 370, 1008 |
| TaaI | ACNGT | 2 cut(s) | 538, 1021 |
| TaiI | ACGT | 2 cut(s) | 597, 722 |
| TasI | AATT | 4 cut(s) | 894, 1258, 1274, 1301 |
| TatI | WGTACW | 1 cut(s) | 997 |
| TauI | GCSGC | 2 cut(s) | 842, 1172 |
| TfiI | GAWTC | 1 cut(s) | 454 |
| Tru1I | TTAA | 3 cut(s) | 9, 479, 1218 |
| Tru9I | TTAA | 3 cut(s) | 9, 479, 1218 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 5 cut(s) | 345, 738, 960, 1178, 1181 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 3 cut(s) | 68, 714, 1167 |
| TspRI | CASTG | 1 cut(s) | 111 |
| Tth111I | GACNNNGTC | 1 cut(s) | 593 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 1 cut(s) | 1325 |
| XhoI | CTCGAG | 1 cut(s) | 569 |
| XmiI | GTMKAC | 3 cut(s) | 351, 716, 934 |
| XmnI | GAANNNNTTC | 1 cut(s) | 396 |
| XspI | CTAG | 7 cut(s) | 275, 413, 663, 849, 872, 884, 1047 |
| ZraI | GACGTC | 2 cut(s) | 595, 720 |