BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 59, 299, 353, 428, 514 |
| AclWI | GGATC | 3 cut(s) | 62, 75, 181 |
| AcoI | YGGCCR | 1 cut(s) | 520 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AdeI | CACNNNGTG | 1 cut(s) | 140 |
| AfaI | GTAC | 2 cut(s) | 235, 351 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 471, 478, 485, 499, 506, 525 |
| AgeI | ACCGGT | 2 cut(s) | 464, 485 |
| AgsI | TTSAA | 3 cut(s) | 109, 155, 359 |
| AleI | CACNNNNGTG | 1 cut(s) | 396 |
| AluBI | AGCT | 2 cut(s) | 146, 210 |
| AluI | AGCT | 2 cut(s) | 146, 210 |
| Alw21I | GWGCWC | 2 cut(s) | 212, 540 |
| Alw26I | GTCTC | 1 cut(s) | 504 |
| AlwI | GGATC | 3 cut(s) | 62, 75, 181 |
| AoxI | GGCC | 1 cut(s) | 520 |
| ApeKI | GCWGC | 2 cut(s) | 143, 323 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| AsiGI | ACCGGT | 2 cut(s) | 464, 485 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 11 |
| AsuC2I | CCSGG | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 5 cut(s) | 230, 454, 475, 496, 522 |
| BamHI | GGATCC | 1 cut(s) | 67 |
| BanII | GRGCYC | 1 cut(s) | 212 |
| Bbv12I | GWGCWC | 2 cut(s) | 212, 540 |
| BbvI | GCAGC | 2 cut(s) | 155, 310 |
| BceAI | ACGGC | 1 cut(s) | 441 |
| BcnI | CCSGG | 1 cut(s) | 240 |
| BcoDI | GTCTC | 1 cut(s) | 504 |
| BfaI | CTAG | 1 cut(s) | 72 |
| BisI | GCNGC | 4 cut(s) | 60, 144, 300, 324 |
| BlsI | GCNGC | 4 cut(s) | 61, 145, 301, 325 |
| BmcAI | AGTACT | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 240 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 461 |
| BpuMI | CCSGG | 1 cut(s) | 240 |
| BsaAI | YACGTR | 1 cut(s) | 184 |
| BsaI | GGTCTC | 1 cut(s) | 504 |
| BsaWI | WCCGGW | 6 cut(s) | 464, 478, 485, 499, 506, 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 471, 478, 485, 499, 506, 525 |
| Bse118I | RCCGGY | 3 cut(s) | 464, 485, 518 |
| Bse1I | ACTGG | 3 cut(s) | 69, 385, 530 |
| BseGI | GGATG | 1 cut(s) | 559 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 471, 478, 485, 499, 506, 525 |
| BseNI | ACTGG | 3 cut(s) | 69, 385, 530 |
| BseRI | GAGGAG | 1 cut(s) | 417 |
| BseXI | GCAGC | 2 cut(s) | 155, 310 |
| BsgI | GTGCAG | 1 cut(s) | 162 |
| Bsh1285I | CGRYCG | 1 cut(s) | 490 |
| BshFI | GGCC | 1 cut(s) | 522 |
| BshTI | ACCGGT | 2 cut(s) | 464, 485 |
| BsiEI | CGRYCG | 1 cut(s) | 490 |
| BsiHKAI | GWGCWC | 2 cut(s) | 212, 540 |
| BsiSI | CCGG | 9 cut(s) | 240, 465, 472, 479, 486, 500, 507, 519, 533 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 471, 478, 485, 499, 506, 525 |
| BsmAI | GTCTC | 1 cut(s) | 504 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 1 cut(s) | 522 |
| Bso31I | GGTCTC | 1 cut(s) | 504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 212, 540 |
| Bsp143I | GATC | 4 cut(s) | 67, 186, 293, 406 |
| BspACI | CCGC | 5 cut(s) | 59, 299, 353, 428, 514 |
| BspANI | GGCC | 1 cut(s) | 522 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspPI | GGATC | 3 cut(s) | 62, 75, 181 |
| BspTNI | GGTCTC | 1 cut(s) | 504 |
| BsrFI | RCCGGY | 3 cut(s) | 464, 485, 518 |
| BsrI | ACTGG | 3 cut(s) | 69, 385, 530 |
| BssAI | RCCGGY | 3 cut(s) | 464, 485, 518 |
| BssMI | GATC | 4 cut(s) | 67, 186, 293, 406 |
| Bst4CI | ACNGT | 3 cut(s) | 171, 398, 542 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 56, 140 |
| BstBAI | YACGTR | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 2 cut(s) | 48, 321 |
| BstEII | GGTNACC | 4 cut(s) | 460, 481, 502, 528 |
| BstF5I | GGATG | 1 cut(s) | 559 |
| BstKTI | GATC | 4 cut(s) | 70, 189, 296, 409 |
| BstMAI | GTCTC | 1 cut(s) | 504 |
| BstMBI | GATC | 4 cut(s) | 67, 186, 293, 406 |
| BstMCI | CGRYCG | 1 cut(s) | 490 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 140, 332 |
| BstPI | GGTNACC | 4 cut(s) | 460, 481, 502, 528 |
| BstSCI | CCNGG | 1 cut(s) | 238 |
| BstV1I | GCAGC | 2 cut(s) | 155, 310 |
| BstX2I | RGATCY | 1 cut(s) | 67 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 67 |
| BsuRI | GGCC | 1 cut(s) | 522 |
| BtsCI | GGATG | 1 cut(s) | 559 |
| BtsIMutI | CAGTG | 2 cut(s) | 62, 523 |
| Cac8I | GCNNGC | 2 cut(s) | 48, 321 |
| Cfr10I | RCCGGY | 3 cut(s) | 464, 485, 518 |
| Csp6I | GTAC | 2 cut(s) | 234, 350 |
| CspAI | ACCGGT | 2 cut(s) | 464, 485 |
| CviJI | RGCY | 6 cut(s) | 146, 158, 210, 286, 471, 522 |
| CviKI_1 | RGCY | 6 cut(s) | 146, 158, 210, 286, 471, 522 |
| CviQI | GTAC | 2 cut(s) | 234, 350 |
| DpnI | GATC | 4 cut(s) | 69, 188, 295, 408 |
| DpnII | GATC | 4 cut(s) | 67, 186, 293, 406 |
| DraIII | CACNNNGTG | 1 cut(s) | 140 |
| EaeI | YGGCCR | 1 cut(s) | 520 |
| EciI | GGCGGA | 1 cut(s) | 443 |
| Ecl136II | GAGCTC | 1 cut(s) | 210 |
| Eco24I | GRGCYC | 1 cut(s) | 212 |
| Eco31I | GGTCTC | 1 cut(s) | 504 |
| Eco53kI | GAGCTC | 1 cut(s) | 210 |
| Eco91I | GGTNACC | 4 cut(s) | 460, 481, 502, 528 |
| EcoICRI | GAGCTC | 1 cut(s) | 210 |
| EcoO65I | GGTNACC | 4 cut(s) | 460, 481, 502, 528 |
| EcoT38I | GRGCYC | 1 cut(s) | 212 |
| FaiI | YATR | 5 cut(s) | 35, 90, 120, 246, 317 |
| Fnu4HI | GCNGC | 4 cut(s) | 60, 144, 300, 324 |
| FokI | GGATG | 1 cut(s) | 566 |
| FriOI | GRGCYC | 1 cut(s) | 212 |
| Fsp4HI | GCNGC | 4 cut(s) | 60, 144, 300, 324 |
| FspBI | CTAG | 1 cut(s) | 72 |
| GluI | GCNGC | 4 cut(s) | 60, 144, 300, 324 |
| GsuI | CTGGAG | 1 cut(s) | 461 |
| HaeIII | GGCC | 1 cut(s) | 522 |
| HapII | CCGG | 9 cut(s) | 240, 465, 472, 479, 486, 500, 507, 519, 533 |
| HinfI | GANTC | 4 cut(s) | 221, 416, 475, 496 |
| HpaII | CCGG | 9 cut(s) | 240, 465, 472, 479, 486, 500, 507, 519, 533 |
| HphI | GGTGA | 5 cut(s) | 230, 454, 475, 496, 522 |
| Hpy188III | TCNNGA | 1 cut(s) | 197 |
| Hpy99I | CGWCG | 2 cut(s) | 218, 398 |
| HpyCH4III | ACNGT | 3 cut(s) | 171, 398, 542 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 140, 332 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Kzo9I | GATC | 4 cut(s) | 67, 186, 293, 406 |
| LmnI | GCTCC | 3 cut(s) | 215, 442, 535 |
| Lsp1109I | GCAGC | 2 cut(s) | 155, 310 |
| MaeI | CTAG | 1 cut(s) | 72 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MaeIII | GTNAC | 4 cut(s) | 460, 481, 502, 528 |
| MalI | GATC | 4 cut(s) | 69, 188, 295, 408 |
| MboI | GATC | 4 cut(s) | 67, 186, 293, 406 |
| MflI | RGATCY | 1 cut(s) | 67 |
| MhlI | GDGCHC | 2 cut(s) | 212, 540 |
| MluCI | AATT | 2 cut(s) | 85, 95 |
| MlyI | GAGTC | 1 cut(s) | 425 |
| MnlI | CCTC | 6 cut(s) | 271, 297, 395, 424, 451, 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 11 |
| MseI | TTAA | 1 cut(s) | 78 |
| MslI | CAYNNNNRTG | 1 cut(s) | 396 |
| MspA1I | CMGCKG | 1 cut(s) | 146 |
| MspI | CCGG | 9 cut(s) | 240, 465, 472, 479, 486, 500, 507, 519, 533 |
| MspR9I | CCNGG | 1 cut(s) | 240 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 140, 332 |
| NciI | CCSGG | 1 cut(s) | 240 |
| NdeII | GATC | 4 cut(s) | 67, 186, 293, 406 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NmuCI | GTSAC | 4 cut(s) | 460, 481, 502, 528 |
| OliI | CACNNNNGTG | 1 cut(s) | 396 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PdmI | GAANNNNTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 3 cut(s) | 221, 475, 496 |
| PfoI | TCCNGGA | 1 cut(s) | 238 |
| PinAI | ACCGGT | 2 cut(s) | 464, 485 |
| PkrI | GCNGC | 4 cut(s) | 61, 145, 301, 325 |
| PleI | GAGTC | 1 cut(s) | 424 |
| PpsI | GAGTC | 1 cut(s) | 424 |
| Ppu21I | YACGTR | 1 cut(s) | 184 |
| Psp124BI | GAGCTC | 1 cut(s) | 212 |
| PspEI | GGTNACC | 4 cut(s) | 460, 481, 502, 528 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PsuI | RGATCY | 1 cut(s) | 67 |
| PvuII | CAGCTG | 1 cut(s) | 146 |
| RsaI | GTAC | 2 cut(s) | 235, 351 |
| RsaNI | GTAC | 2 cut(s) | 234, 350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 396 |
| SacI | GAGCTC | 1 cut(s) | 212 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| SatI | GCNGC | 4 cut(s) | 60, 144, 300, 324 |
| Sau3AI | GATC | 4 cut(s) | 67, 186, 293, 406 |
| ScaI | AGTACT | 1 cut(s) | 235 |
| SchI | GAGTC | 1 cut(s) | 425 |
| ScrFI | CCNGG | 1 cut(s) | 240 |
| SduI | GDGCHC | 2 cut(s) | 212, 540 |
| SetI | ASST | 6 cut(s) | 142, 148, 186, 212, 462, 549 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 396 |
| Sse9I | AATT | 2 cut(s) | 85, 95 |
| SsiI | CCGC | 5 cut(s) | 59, 299, 353, 428, 514 |
| SspMI | CTAG | 1 cut(s) | 72 |
| SstI | GAGCTC | 1 cut(s) | 212 |
| StyD4I | CCNGG | 1 cut(s) | 238 |
| TaaI | ACNGT | 3 cut(s) | 171, 398, 542 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TaqI | TCGA | 3 cut(s) | 249, 276, 414 |
| TaqII | GACCGA | 1 cut(s) | 327 |
| TasI | AATT | 2 cut(s) | 85, 95 |
| TatI | WGTACW | 1 cut(s) | 233 |
| TauI | GCSGC | 2 cut(s) | 62, 302 |
| TfiI | GAWTC | 3 cut(s) | 221, 475, 496 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 2 cut(s) | 69, 530 |
| TseFI | GTSAC | 4 cut(s) | 460, 481, 502, 528 |
| TseI | GCWGC | 2 cut(s) | 143, 323 |
| Tsp45I | GTSAC | 4 cut(s) | 460, 481, 502, 528 |
| TspDTI | ATGAA | 2 cut(s) | 98, 213 |
| TspGWI | ACGGA | 3 cut(s) | 137, 141, 202 |
| TspRI | CASTG | 2 cut(s) | 69, 530 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 1 cut(s) | 11 |
| XspI | CTAG | 1 cut(s) | 72 |
| ZrmI | AGTACT | 1 cut(s) | 235 |