BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 760 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 286 |
| AccII | CGCG | 1 cut(s) | 236 |
| AciI | CCGC | 3 cut(s) | 5, 76, 833 |
| AclWI | GGATC | 6 cut(s) | 326, 548, 644, 657, 828, 1005 |
| AcsI | RAATTY | 5 cut(s) | 416, 693, 779, 802, 1053 |
| AcuI | CTGAAG | 2 cut(s) | 180, 312 |
| AfaI | GTAC | 6 cut(s) | 317, 472, 605, 659, 902, 1004 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 199, 286, 439, 628 |
| AflII | CTTAAG | 1 cut(s) | 359 |
| AflIII | ACRYGT | 1 cut(s) | 18 |
| AgsI | TTSAA | 5 cut(s) | 377, 421, 481, 808, 915 |
| AjiI | CACGTC | 1 cut(s) | 19 |
| AluBI | AGCT | 5 cut(s) | 373, 512, 713, 817, 1037 |
| AluI | AGCT | 5 cut(s) | 373, 512, 713, 817, 1037 |
| Alw21I | GWGCWC | 1 cut(s) | 858 |
| Alw26I | GTCTC | 2 cut(s) | 236, 457 |
| Alw44I | GTGCAC | 1 cut(s) | 854 |
| AlwI | GGATC | 6 cut(s) | 326, 548, 644, 657, 828, 1005 |
| Ama87I | CYCGRG | 1 cut(s) | 849 |
| AoxI | GGCC | 1 cut(s) | 23 |
| ApaLI | GTGCAC | 1 cut(s) | 854 |
| ApeKI | GCWGC | 3 cut(s) | 63, 79, 249 |
| ApoI | RAATTY | 5 cut(s) | 416, 693, 779, 802, 1053 |
| AseI | ATTAAT | 1 cut(s) | 597 |
| AspLEI | GCGC | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 1 cut(s) | 679 |
| AvaI | CYCGRG | 1 cut(s) | 849 |
| BaeGI | GKGCMC | 1 cut(s) | 858 |
| BamHI | GGATCC | 1 cut(s) | 649 |
| BanI | GGYRCC | 1 cut(s) | 760 |
| BauI | CACGAG | 2 cut(s) | 857, 924 |
| BbsI | GAAGAC | 1 cut(s) | 815 |
| Bbv12I | GWGCWC | 1 cut(s) | 858 |
| BbvI | GCAGC | 3 cut(s) | 50, 66, 261 |
| BccI | CCATC | 3 cut(s) | 88, 913, 988 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 214, 248 |
| BciVI | GTATCC | 1 cut(s) | 394 |
| BcoDI | GTCTC | 2 cut(s) | 236, 457 |
| BfaI | CTAG | 4 cut(s) | 428, 509, 587, 872 |
| BfmI | CTRYAG | 3 cut(s) | 120, 636, 951 |
| BfrI | CTTAAG | 1 cut(s) | 359 |
| BfuI | GTATCC | 1 cut(s) | 394 |
| BisI | GCNGC | 5 cut(s) | 5, 64, 77, 80, 250 |
| BlsI | GCNGC | 5 cut(s) | 6, 65, 78, 81, 251 |
| BmeT110I | CYCGRG | 1 cut(s) | 849 |
| BmgBI | CACGTC | 1 cut(s) | 19 |
| BmiI | GGNNCC | 3 cut(s) | 651, 762, 837 |
| BmsI | GCATC | 5 cut(s) | 156, 318, 400, 775, 834 |
| BpiI | GAAGAC | 1 cut(s) | 815 |
| BpmI | CTGGAG | 1 cut(s) | 290 |
| BpuEI | CTTGAG | 1 cut(s) | 18 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 3 cut(s) | 154, 653, 1029 |
| BsaWI | WCCGGW | 1 cut(s) | 943 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 159, 199, 286, 439, 628 |
| Bse118I | RCCGGY | 1 cut(s) | 59 |
| Bse1I | ACTGG | 2 cut(s) | 273, 611 |
| Bse3DI | GCAATG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 3 cut(s) | 154, 653, 1029 |
| BseGI | GGATG | 1 cut(s) | 504 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 199, 286, 439, 628 |
| BseMI | GCAATG | 1 cut(s) | 252 |
| BseMII | CTCAG | 2 cut(s) | 97, 236 |
| BseNI | ACTGG | 2 cut(s) | 273, 611 |
| BseSI | GKGCMC | 1 cut(s) | 858 |
| BseXI | GCAGC | 3 cut(s) | 50, 66, 261 |
| Bsh1236I | CGCG | 1 cut(s) | 236 |
| BshFI | GGCC | 1 cut(s) | 25 |
| BshNI | GGYRCC | 1 cut(s) | 760 |
| BsiHKAI | GWGCWC | 1 cut(s) | 858 |
| BsiHKCI | CYCGRG | 1 cut(s) | 849 |
| BsiSI | CCGG | 2 cut(s) | 60, 944 |
| BslFI | GGGAC | 2 cut(s) | 317, 365 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 199, 286, 439, 628 |
| BsmAI | GTCTC | 2 cut(s) | 236, 457 |
| BsmFI | GGGAC | 2 cut(s) | 317, 365 |
| BsmI | GAATGC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 25 |
| BsoBI | CYCGRG | 1 cut(s) | 849 |
| Bsp1286I | GDGCHC | 1 cut(s) | 858 |
| Bsp1407I | TGTACA | 1 cut(s) | 470 |
| Bsp143I | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| Bsp19I | CCATGG | 1 cut(s) | 154 |
| BspACI | CCGC | 3 cut(s) | 5, 76, 833 |
| BspANI | GGCC | 1 cut(s) | 25 |
| BspCNI | CTCAG | 2 cut(s) | 96, 237 |
| BspFNI | CGCG | 1 cut(s) | 236 |
| BspHI | TCATGA | 1 cut(s) | 795 |
| BspLI | GGNNCC | 3 cut(s) | 651, 762, 837 |
| BspMAI | CTGCAG | 2 cut(s) | 124, 640 |
| BspPI | GGATC | 6 cut(s) | 326, 548, 644, 657, 828, 1005 |
| BspT107I | GGYRCC | 1 cut(s) | 760 |
| BspTI | CTTAAG | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 252 |
| BsrFI | RCCGGY | 1 cut(s) | 59 |
| BsrGI | TGTACA | 1 cut(s) | 470 |
| BsrI | ACTGG | 2 cut(s) | 273, 611 |
| BssAI | RCCGGY | 1 cut(s) | 59 |
| BssECI | CCNNGG | 3 cut(s) | 154, 653, 1029 |
| BssMI | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| BssSI | CACGAG | 2 cut(s) | 857, 924 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst2BI | CACGAG | 2 cut(s) | 857, 924 |
| Bst4CI | ACNGT | 3 cut(s) | 468, 955, 1030 |
| Bst6I | CTCTTC | 1 cut(s) | 194 |
| BstAFI | CTTAAG | 1 cut(s) | 359 |
| BstAUI | TGTACA | 1 cut(s) | 470 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 3 cut(s) | 68, 223, 1020 |
| BstDEI | CTNAG | 2 cut(s) | 83, 245 |
| BstDSI | CCRYGG | 2 cut(s) | 154, 1029 |
| BstF5I | GGATG | 1 cut(s) | 504 |
| BstFNI | CGCG | 1 cut(s) | 236 |
| BstHHI | GCGC | 1 cut(s) | 238 |
| BstKTI | GATC | 5 cut(s) | 334, 556, 652, 823, 1000 |
| BstMAI | GTCTC | 2 cut(s) | 236, 457 |
| BstMBI | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 76, 844, 853 |
| BstSFI | CTRYAG | 3 cut(s) | 120, 636, 951 |
| BstSLI | GKGCMC | 1 cut(s) | 858 |
| BstUI | CGCG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 3 cut(s) | 50, 66, 261 |
| BstV2I | GAAGAC | 1 cut(s) | 815 |
| BstX2I | RGATCY | 3 cut(s) | 331, 553, 649 |
| BstYI | RGATCY | 3 cut(s) | 331, 553, 649 |
| BsuI | GTATCC | 1 cut(s) | 394 |
| BsuRI | GGCC | 1 cut(s) | 25 |
| BtgI | CCRYGG | 2 cut(s) | 154, 1029 |
| BtrI | CACGTC | 1 cut(s) | 19 |
| BtsCI | GGATG | 1 cut(s) | 504 |
| BtsI | GCAGTG | 2 cut(s) | 117, 645 |
| BtsIMutI | CAGTG | 4 cut(s) | 91, 117, 204, 645 |
| Cac8I | GCNNGC | 3 cut(s) | 68, 223, 1020 |
| CciI | TCATGA | 1 cut(s) | 795 |
| CfoI | GCGC | 1 cut(s) | 238 |
| Cfr10I | RCCGGY | 1 cut(s) | 59 |
| Csp6I | GTAC | 6 cut(s) | 316, 471, 604, 658, 901, 1003 |
| CviAII | CATG | 7 cut(s) | 131, 155, 281, 338, 548, 646, 796 |
| CviQI | GTAC | 6 cut(s) | 316, 471, 604, 658, 901, 1003 |
| DdeI | CTNAG | 2 cut(s) | 83, 245 |
| DpnI | GATC | 5 cut(s) | 333, 555, 651, 822, 999 |
| DpnII | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| Eam1104I | CTCTTC | 1 cut(s) | 194 |
| EarI | CTCTTC | 1 cut(s) | 194 |
| EciI | GGCGGA | 1 cut(s) | 848 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco57I | CTGAAG | 2 cut(s) | 180, 312 |
| Eco88I | CYCGRG | 1 cut(s) | 849 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| FaeI | CATG | 7 cut(s) | 134, 158, 284, 341, 551, 649, 799 |
| FaqI | GGGAC | 2 cut(s) | 317, 365 |
| FatI | CATG | 7 cut(s) | 130, 154, 280, 337, 547, 645, 795 |
| FauNDI | CATATG | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 64, 77, 80, 250 |
| FokI | GGATG | 1 cut(s) | 491 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 64, 77, 80, 250 |
| FspBI | CTAG | 4 cut(s) | 428, 509, 587, 872 |
| GlaI | GCGC | 1 cut(s) | 237 |
| GluI | GCNGC | 5 cut(s) | 5, 64, 77, 80, 250 |
| GsuI | CTGGAG | 1 cut(s) | 290 |
| HaeIII | GGCC | 1 cut(s) | 25 |
| HapII | CCGG | 2 cut(s) | 60, 944 |
| HhaI | GCGC | 1 cut(s) | 238 |
| Hin1II | CATG | 7 cut(s) | 134, 158, 284, 341, 551, 649, 799 |
| Hin6I | GCGC | 1 cut(s) | 236 |
| HinP1I | GCGC | 1 cut(s) | 236 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 1 cut(s) | 110 |
| HpaII | CCGG | 2 cut(s) | 60, 944 |
| HphI | GGTGA | 1 cut(s) | 679 |
| Hpy166II | GTNNAC | 4 cut(s) | 205, 471, 473, 856 |
| Hpy188I | TCNGA | 6 cut(s) | 115, 246, 331, 654, 717, 843 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 729, 796, 926 |
| Hpy8I | GTNNAC | 4 cut(s) | 205, 471, 473, 856 |
| HpyAV | CCTTC | 3 cut(s) | 36, 204, 759 |
| HpyCH4III | ACNGT | 3 cut(s) | 468, 955, 1030 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 318 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 76, 844, 853 |
| HpyF3I | CTNAG | 2 cut(s) | 83, 245 |
| HpySE526I | ACGT | 2 cut(s) | 18, 318 |
| Hsp92II | CATG | 7 cut(s) | 134, 158, 284, 341, 551, 649, 799 |
| HspAI | GCGC | 1 cut(s) | 236 |
| Kzo9I | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| LmnI | GCTCC | 2 cut(s) | 718, 835 |
| Lsp1109I | GCAGC | 3 cut(s) | 50, 66, 261 |
| LweI | GCATC | 5 cut(s) | 156, 318, 400, 775, 834 |
| MaeI | CTAG | 4 cut(s) | 428, 509, 587, 872 |
| MaeII | ACGT | 2 cut(s) | 18, 318 |
| MaeIII | GTNAC | 4 cut(s) | 55, 319, 926, 962 |
| MalI | GATC | 5 cut(s) | 333, 555, 651, 822, 999 |
| MboI | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| MfeI | CAATTG | 1 cut(s) | 226 |
| MflI | RGATCY | 3 cut(s) | 331, 553, 649 |
| MhlI | GDGCHC | 1 cut(s) | 858 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 2 cut(s) | 740, 1030 |
| MnlI | CCTC | 8 cut(s) | 40, 197, 334, 445, 648, 765, 849, 858 |
| MseI | TTAA | 7 cut(s) | 138, 291, 360, 564, 597, 887, 1057 |
| MspCI | CTTAAG | 1 cut(s) | 359 |
| MspI | CCGG | 2 cut(s) | 60, 944 |
| MunI | CAATTG | 1 cut(s) | 226 |
| Mva1269I | GAATGC | 1 cut(s) | 280 |
| MvnI | CGCG | 1 cut(s) | 236 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 76, 844, 853 |
| NcoI | CCATGG | 1 cut(s) | 154 |
| NdeI | CATATG | 1 cut(s) | 406 |
| NdeII | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| NlaIII | CATG | 7 cut(s) | 134, 158, 284, 341, 551, 649, 799 |
| NlaIV | GGNNCC | 3 cut(s) | 651, 762, 837 |
| NmuCI | GTSAC | 3 cut(s) | 319, 926, 962 |
| PaeR7I | CTCGAG | 1 cut(s) | 849 |
| PagI | TCATGA | 1 cut(s) | 795 |
| PctI | GAATGC | 1 cut(s) | 280 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 286 |
| PkrI | GCNGC | 5 cut(s) | 6, 65, 78, 81, 251 |
| PleI | GAGTC | 1 cut(s) | 104 |
| PpsI | GAGTC | 1 cut(s) | 104 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| PshBI | ATTAAT | 1 cut(s) | 597 |
| PspN4I | GGNNCC | 3 cut(s) | 651, 762, 837 |
| PspXI | VCTCGAGB | 1 cut(s) | 849 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 662, 694, 939, 971 |
| PstI | CTGCAG | 2 cut(s) | 124, 640 |
| PsuI | RGATCY | 3 cut(s) | 331, 553, 649 |
| RsaI | GTAC | 6 cut(s) | 317, 472, 605, 659, 902, 1004 |
| RsaNI | GTAC | 6 cut(s) | 316, 471, 604, 658, 901, 1003 |
| SaqAI | TTAA | 7 cut(s) | 138, 291, 360, 564, 597, 887, 1057 |
| SatI | GCNGC | 5 cut(s) | 5, 64, 77, 80, 250 |
| Sau3AI | GATC | 5 cut(s) | 331, 553, 649, 820, 997 |
| SchI | GAGTC | 1 cut(s) | 104 |
| SduI | GDGCHC | 1 cut(s) | 858 |
| SfaNI | GCATC | 5 cut(s) | 156, 318, 400, 775, 834 |
| SfcI | CTRYAG | 3 cut(s) | 120, 636, 951 |
| Sfr274I | CTCGAG | 1 cut(s) | 849 |
| SlaI | CTCGAG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 3 cut(s) | 33, 359, 849 |
| SmoI | CTYRAG | 3 cut(s) | 33, 359, 849 |
| SsiI | CCGC | 3 cut(s) | 5, 76, 833 |
| SspMI | CTAG | 4 cut(s) | 428, 509, 587, 872 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 3 cut(s) | 468, 955, 1030 |
| TaiI | ACGT | 2 cut(s) | 21, 321 |
| TaqI | TCGA | 2 cut(s) | 577, 850 |
| TatI | WGTACW | 2 cut(s) | 470, 1002 |
| TauI | GCSGC | 2 cut(s) | 7, 79 |
| Tru1I | TTAA | 7 cut(s) | 138, 291, 360, 564, 597, 887, 1057 |
| Tru9I | TTAA | 7 cut(s) | 138, 291, 360, 564, 597, 887, 1057 |
| TscAI | CASTG | 4 cut(s) | 91, 124, 204, 645 |
| TseFI | GTSAC | 3 cut(s) | 319, 926, 962 |
| TseI | GCWGC | 3 cut(s) | 63, 79, 249 |
| Tsp45I | GTSAC | 3 cut(s) | 319, 926, 962 |
| TspDTI | ATGAA | 3 cut(s) | 564, 680, 812 |
| TspRI | CASTG | 4 cut(s) | 91, 124, 204, 645 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 286 |
| Vha464I | CTTAAG | 1 cut(s) | 359 |
| VneI | GTGCAC | 1 cut(s) | 854 |
| VspI | ATTAAT | 1 cut(s) | 597 |
| XapI | RAATTY | 5 cut(s) | 416, 693, 779, 802, 1053 |
| XhoI | CTCGAG | 1 cut(s) | 849 |
| XspI | CTAG | 4 cut(s) | 428, 509, 587, 872 |