BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 244 - 341 | 7.9e-21 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 242, 444 |
| AarI | CACCTGC | 1 cut(s) | 774 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 1 cut(s) | 774 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 4 cut(s) | 266, 744, 899, 1030 |
| AclWI | GGATC | 3 cut(s) | 902, 915, 1021 |
| AcsI | RAATTY | 6 cut(s) | 204, 344, 565, 851, 935, 1096 |
| AdeI | CACNNNGTG | 1 cut(s) | 980 |
| AfaI | GTAC | 1 cut(s) | 1075 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 382 |
| AflIII | ACRYGT | 1 cut(s) | 1084 |
| AgsI | TTSAA | 9 cut(s) | 149, 296, 352, 497, 562, 728, 949, 995, 1133 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AluBI | AGCT | 5 cut(s) | 36, 167, 775, 986, 1050 |
| AluI | AGCT | 5 cut(s) | 36, 167, 775, 986, 1050 |
| Alw21I | GWGCWC | 3 cut(s) | 38, 169, 1052 |
| Alw26I | GTCTC | 2 cut(s) | 21, 380 |
| AlwI | GGATC | 3 cut(s) | 902, 915, 1021 |
| ApeKI | GCWGC | 1 cut(s) | 983 |
| ApoI | RAATTY | 6 cut(s) | 204, 344, 565, 851, 935, 1096 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 291, 851 |
| AsuC2I | CCSGG | 1 cut(s) | 1080 |
| AsuHPI | GGTGA | 3 cut(s) | 95, 755, 1070 |
| AsuII | TTCGAA | 1 cut(s) | 285 |
| BamHI | GGATCC | 1 cut(s) | 907 |
| BanII | GRGCYC | 4 cut(s) | 38, 169, 178, 1052 |
| BauI | CACGAG | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 504 |
| Bbv12I | GWGCWC | 3 cut(s) | 38, 169, 1052 |
| BbvI | GCAGC | 1 cut(s) | 995 |
| BccI | CCATC | 2 cut(s) | 211, 806 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BcnI | CCSGG | 1 cut(s) | 1080 |
| BcoDI | GTCTC | 2 cut(s) | 21, 380 |
| BfaI | CTAG | 3 cut(s) | 279, 600, 912 |
| BfmI | CTRYAG | 1 cut(s) | 531 |
| BfuAI | ACCTGC | 1 cut(s) | 774 |
| BisI | GCNGC | 2 cut(s) | 900, 984 |
| BlsI | GCNGC | 2 cut(s) | 901, 985 |
| BmcAI | AGTACT | 1 cut(s) | 1075 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 1080 |
| BmiI | GGNNCC | 2 cut(s) | 12, 909 |
| BmrFI | CCNGG | 2 cut(s) | 127, 1080 |
| BmrI | ACTGGG | 1 cut(s) | 787 |
| BmsI | GCATC | 3 cut(s) | 264, 469, 778 |
| BmuI | ACTGGG | 1 cut(s) | 787 |
| BpiI | GAAGAC | 1 cut(s) | 504 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| Bpu14I | TTCGAA | 1 cut(s) | 285 |
| BpuMI | CCSGG | 1 cut(s) | 1080 |
| BsaAI | YACGTR | 1 cut(s) | 1024 |
| BsaJI | CCNNGG | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 382 |
| Bse1I | ACTGG | 3 cut(s) | 793, 869, 909 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 126 |
| BseGI | GGATG | 1 cut(s) | 484 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 382 |
| BseMII | CTCAG | 4 cut(s) | 161, 383, 645, 822 |
| BseNI | ACTGG | 3 cut(s) | 793, 869, 909 |
| BseXI | GCAGC | 1 cut(s) | 995 |
| BsgI | GTGCAG | 1 cut(s) | 1002 |
| BsiHKAI | GWGCWC | 3 cut(s) | 38, 169, 1052 |
| BsiSI | CCGG | 1 cut(s) | 1080 |
| BslFI | GGGAC | 2 cut(s) | 143, 449 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 382 |
| BsmAI | GTCTC | 2 cut(s) | 21, 380 |
| BsmFI | GGGAC | 2 cut(s) | 143, 449 |
| BsmI | GAATGC | 2 cut(s) | 308, 721 |
| Bsp119I | TTCGAA | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 4 cut(s) | 38, 169, 178, 1052 |
| Bsp143I | GATC | 2 cut(s) | 907, 1026 |
| BspACI | CCGC | 4 cut(s) | 266, 744, 899, 1030 |
| BspCNI | CTCAG | 4 cut(s) | 162, 384, 646, 821 |
| BspLI | GGNNCC | 2 cut(s) | 12, 909 |
| BspMI | ACCTGC | 1 cut(s) | 774 |
| BspPI | GGATC | 3 cut(s) | 902, 915, 1021 |
| BspT104I | TTCGAA | 1 cut(s) | 285 |
| BsrI | ACTGG | 3 cut(s) | 793, 869, 909 |
| BssECI | CCNNGG | 1 cut(s) | 126 |
| BssMI | GATC | 2 cut(s) | 907, 1026 |
| BssSI | CACGAG | 1 cut(s) | 31 |
| Bst2BI | CACGAG | 1 cut(s) | 31 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 4 cut(s) | 10, 410, 416, 1011 |
| Bst6I | CTCTTC | 2 cut(s) | 155, 619 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 896, 980 |
| BstBAI | YACGTR | 1 cut(s) | 1024 |
| BstBI | TTCGAA | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 2 cut(s) | 842, 888 |
| BstDEI | CTNAG | 5 cut(s) | 170, 213, 392, 654, 808 |
| BstF5I | GGATG | 1 cut(s) | 484 |
| BstKTI | GATC | 2 cut(s) | 910, 1029 |
| BstMAI | GTCTC | 2 cut(s) | 21, 380 |
| BstMBI | GATC | 2 cut(s) | 907, 1026 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 173, 274, 896, 980 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstNSI | RCATGY | 2 cut(s) | 844, 1088 |
| BstSCI | CCNGG | 2 cut(s) | 125, 1078 |
| BstSFI | CTRYAG | 1 cut(s) | 531 |
| BstV1I | GCAGC | 1 cut(s) | 995 |
| BstV2I | GAAGAC | 1 cut(s) | 504 |
| BstX2I | RGATCY | 1 cut(s) | 907 |
| BstYI | RGATCY | 1 cut(s) | 907 |
| BtsCI | GGATG | 1 cut(s) | 484 |
| BtsIMutI | CAGTG | 3 cut(s) | 389, 415, 902 |
| BveI | ACCTGC | 1 cut(s) | 774 |
| Cac8I | GCNNGC | 2 cut(s) | 842, 888 |
| Csp6I | GTAC | 1 cut(s) | 1074 |
| CviAII | CATG | 4 cut(s) | 404, 552, 841, 1085 |
| CviQI | GTAC | 1 cut(s) | 1074 |
| DdeI | CTNAG | 5 cut(s) | 170, 213, 392, 654, 808 |
| DpnI | GATC | 2 cut(s) | 909, 1028 |
| DpnII | GATC | 2 cut(s) | 907, 1026 |
| DraIII | CACNNNGTG | 1 cut(s) | 980 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 506 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 506 |
| Eam1104I | CTCTTC | 2 cut(s) | 155, 619 |
| EarI | CTCTTC | 2 cut(s) | 155, 619 |
| Ecl136II | GAGCTC | 3 cut(s) | 36, 167, 1050 |
| Eco24I | GRGCYC | 4 cut(s) | 38, 169, 178, 1052 |
| Eco53kI | GAGCTC | 3 cut(s) | 36, 167, 1050 |
| EcoICRI | GAGCTC | 3 cut(s) | 36, 167, 1050 |
| EcoRI | GAATTC | 1 cut(s) | 344 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT22I | ATGCAT | 1 cut(s) | 484 |
| EcoT38I | GRGCYC | 4 cut(s) | 38, 169, 178, 1052 |
| FaeI | CATG | 4 cut(s) | 407, 555, 844, 1088 |
| FaqI | GGGAC | 2 cut(s) | 143, 449 |
| FatI | CATG | 4 cut(s) | 403, 551, 840, 1084 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 2 cut(s) | 900, 984 |
| FokI | GGATG | 1 cut(s) | 491 |
| FriOI | GRGCYC | 4 cut(s) | 38, 169, 178, 1052 |
| Fsp4HI | GCNGC | 2 cut(s) | 900, 984 |
| FspBI | CTAG | 3 cut(s) | 279, 600, 912 |
| GluI | GCNGC | 2 cut(s) | 900, 984 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HapII | CCGG | 1 cut(s) | 1080 |
| Hin1II | CATG | 4 cut(s) | 407, 555, 844, 1088 |
| HinfI | GANTC | 8 cut(s) | 116, 122, 287, 513, 632, 728, 1061, 1090 |
| HpaII | CCGG | 1 cut(s) | 1080 |
| HphI | GGTGA | 3 cut(s) | 95, 755, 1070 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 249, 694, 798 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 121, 171, 512, 811 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 39, 198, 476, 618, 1037 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 249, 694, 798 |
| Hpy99I | CGWCG | 1 cut(s) | 1058 |
| HpyAV | CCTTC | 1 cut(s) | 668 |
| HpyCH4III | ACNGT | 4 cut(s) | 10, 410, 416, 1011 |
| HpyCH4IV | ACGT | 1 cut(s) | 1023 |
| HpyCH4V | TGCA | 6 cut(s) | 182, 306, 482, 769, 983, 1111 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 173, 274, 896, 980 |
| HpyF3I | CTNAG | 5 cut(s) | 170, 213, 392, 654, 808 |
| HpySE526I | ACGT | 1 cut(s) | 1023 |
| Hsp92II | CATG | 4 cut(s) | 407, 555, 844, 1088 |
| Kzo9I | GATC | 2 cut(s) | 907, 1026 |
| LmnI | GCTCC | 1 cut(s) | 1055 |
| Lsp1109I | GCAGC | 1 cut(s) | 995 |
| LweI | GCATC | 3 cut(s) | 264, 469, 778 |
| MaeI | CTAG | 3 cut(s) | 279, 600, 912 |
| MaeII | ACGT | 1 cut(s) | 1023 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 2 cut(s) | 909, 1028 |
| MboI | GATC | 2 cut(s) | 907, 1026 |
| MboII | GAAGA | 5 cut(s) | 172, 340, 509, 606, 676 |
| MflI | RGATCY | 1 cut(s) | 907 |
| MhlI | GDGCHC | 4 cut(s) | 38, 169, 178, 1052 |
| MlyI | GAGTC | 1 cut(s) | 522 |
| MmeI | TCCRAC | 1 cut(s) | 490 |
| MnlI | CCTC | 8 cut(s) | 133, 165, 313, 386, 387, 559, 614, 622 |
| Mph1103I | ATGCAT | 1 cut(s) | 484 |
| MroXI | GAANNNNTTC | 2 cut(s) | 291, 851 |
| MseI | TTAA | 8 cut(s) | 188, 261, 273, 339, 486, 575, 822, 918 |
| MslI | CAYNNNNRTG | 3 cut(s) | 402, 408, 810 |
| MspA1I | CMGCKG | 1 cut(s) | 986 |
| MspI | CCGG | 1 cut(s) | 1080 |
| MspR9I | CCNGG | 2 cut(s) | 127, 1080 |
| Mva1269I | GAATGC | 2 cut(s) | 308, 721 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 173, 274, 896, 980 |
| NciI | CCSGG | 1 cut(s) | 1080 |
| NdeII | GATC | 2 cut(s) | 907, 1026 |
| NlaIII | CATG | 4 cut(s) | 407, 555, 844, 1088 |
| NlaIV | GGNNCC | 2 cut(s) | 12, 909 |
| NmuCI | GTSAC | 1 cut(s) | 410 |
| NsiI | ATGCAT | 1 cut(s) | 484 |
| NspI | RCATGY | 2 cut(s) | 844, 1088 |
| NspV | TTCGAA | 1 cut(s) | 285 |
| PaeI | GCATGC | 1 cut(s) | 844 |
| PaqCI | CACCTGC | 1 cut(s) | 774 |
| PciI | ACATGT | 1 cut(s) | 1084 |
| PctI | GAATGC | 2 cut(s) | 308, 721 |
| PdmI | GAANNNNTTC | 2 cut(s) | 291, 851 |
| PfeI | GAWTC | 7 cut(s) | 116, 122, 287, 632, 728, 1061, 1090 |
| PflFI | GACNNNGTC | 1 cut(s) | 134 |
| PfoI | TCCNGGA | 1 cut(s) | 1078 |
| PkrI | GCNGC | 2 cut(s) | 901, 985 |
| PleI | GAGTC | 1 cut(s) | 521 |
| PpsI | GAGTC | 1 cut(s) | 521 |
| Ppu21I | YACGTR | 1 cut(s) | 1024 |
| PscI | ACATGT | 1 cut(s) | 1084 |
| PsiI | TTATAA | 2 cut(s) | 242, 444 |
| Psp124BI | GAGCTC | 3 cut(s) | 38, 169, 1052 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 2 cut(s) | 12, 909 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 528, 560 |
| PsuI | RGATCY | 1 cut(s) | 907 |
| PsyI | GACNNNGTC | 1 cut(s) | 134 |
| PvuII | CAGCTG | 1 cut(s) | 986 |
| RsaI | GTAC | 1 cut(s) | 1075 |
| RsaNI | GTAC | 1 cut(s) | 1074 |
| RseI | CAYNNNNRTG | 3 cut(s) | 402, 408, 810 |
| SacI | GAGCTC | 3 cut(s) | 38, 169, 1052 |
| SaqAI | TTAA | 8 cut(s) | 188, 261, 273, 339, 486, 575, 822, 918 |
| SatI | GCNGC | 2 cut(s) | 900, 984 |
| Sau3AI | GATC | 2 cut(s) | 907, 1026 |
| ScaI | AGTACT | 1 cut(s) | 1075 |
| SchI | GAGTC | 1 cut(s) | 522 |
| ScrFI | CCNGG | 2 cut(s) | 127, 1080 |
| SduI | GDGCHC | 4 cut(s) | 38, 169, 178, 1052 |
| SfaNI | GCATC | 3 cut(s) | 264, 469, 778 |
| SfcI | CTRYAG | 1 cut(s) | 531 |
| SfuI | TTCGAA | 1 cut(s) | 285 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 402, 408, 810 |
| SphI | GCATGC | 1 cut(s) | 844 |
| SsiI | CCGC | 4 cut(s) | 266, 744, 899, 1030 |
| SspMI | CTAG | 3 cut(s) | 279, 600, 912 |
| SstI | GAGCTC | 3 cut(s) | 38, 169, 1052 |
| StyD4I | CCNGG | 2 cut(s) | 125, 1078 |
| TaaI | ACNGT | 4 cut(s) | 10, 410, 416, 1011 |
| TaiI | ACGT | 1 cut(s) | 1026 |
| TaqI | TCGA | 4 cut(s) | 104, 138, 285, 713 |
| TatI | WGTACW | 1 cut(s) | 1073 |
| TauI | GCSGC | 1 cut(s) | 902 |
| TfiI | GAWTC | 7 cut(s) | 116, 122, 287, 632, 728, 1061, 1090 |
| Tru1I | TTAA | 8 cut(s) | 188, 261, 273, 339, 486, 575, 822, 918 |
| Tru9I | TTAA | 8 cut(s) | 188, 261, 273, 339, 486, 575, 822, 918 |
| TscAI | CASTG | 3 cut(s) | 396, 415, 909 |
| TseFI | GTSAC | 1 cut(s) | 410 |
| TseI | GCWGC | 1 cut(s) | 983 |
| Tsp45I | GTSAC | 1 cut(s) | 410 |
| TspDTI | ATGAA | 5 cut(s) | 99, 720, 938, 1053, 1117 |
| TspGWI | ACGGA | 2 cut(s) | 981, 1042 |
| TspRI | CASTG | 3 cut(s) | 396, 415, 909 |
| Tth111I | GACNNNGTC | 1 cut(s) | 134 |
| XapI | RAATTY | 6 cut(s) | 204, 344, 565, 851, 935, 1096 |
| XceI | RCATGY | 2 cut(s) | 844, 1088 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 2 cut(s) | 291, 851 |
| XspI | CTAG | 3 cut(s) | 279, 600, 912 |
| ZrmI | AGTACT | 1 cut(s) | 1075 |
| Zsp2I | ATGCAT | 1 cut(s) | 484 |