Zinc finger BED domain-containing protein RICESLEEPER
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AciI | CCGC | 5 cut(s) | 224, 535, 583, 717, 744 |
| AclWI | GGATC | 1 cut(s) | 691 |
| AcoI | YGGCCR | 2 cut(s) | 262, 745 |
| AcsI | RAATTY | 1 cut(s) | 10 |
| AcuI | CTGAAG | 1 cut(s) | 108 |
| AcyI | GRCGYC | 1 cut(s) | 704 |
| AfaI | GTAC | 2 cut(s) | 34, 295 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 229 |
| AgsI | TTSAA | 4 cut(s) | 10, 30, 476, 592 |
| AhlI | ACTAGT | 2 cut(s) | 320, 332 |
| AjnI | CCWGG | 2 cut(s) | 43, 376 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 178, 210 |
| AluBI | AGCT | 6 cut(s) | 95, 158, 412, 467, 479, 639 |
| AluI | AGCT | 6 cut(s) | 95, 158, 412, 467, 479, 639 |
| Alw21I | GWGCWC | 3 cut(s) | 97, 222, 280 |
| Alw26I | GTCTC | 2 cut(s) | 77, 227 |
| AlwI | GGATC | 1 cut(s) | 691 |
| AoxI | GGCC | 3 cut(s) | 262, 673, 745 |
| ApeKI | GCWGC | 5 cut(s) | 131, 395, 479, 572, 575 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 334 |
| AspLEI | GCGC | 2 cut(s) | 540, 777 |
| AspS9I | GGNCC | 1 cut(s) | 673 |
| AsuC2I | CCSGG | 1 cut(s) | 580 |
| AsuHPI | GGTGA | 2 cut(s) | 293, 548 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BalI | TGGCCA | 1 cut(s) | 264 |
| BanII | GRGCYC | 1 cut(s) | 97 |
| Bbv12I | GWGCWC | 3 cut(s) | 97, 222, 280 |
| BbvI | GCAGC | 5 cut(s) | 118, 407, 466, 559, 562 |
| BccI | CCATC | 1 cut(s) | 493 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 297, 331, 554, 588 |
| BciT130I | CCWGG | 2 cut(s) | 45, 378 |
| BcnI | CCSGG | 1 cut(s) | 580 |
| BcoDI | GTCTC | 2 cut(s) | 77, 227 |
| BcuI | ACTAGT | 2 cut(s) | 320, 332 |
| BfaI | CTAG | 7 cut(s) | 111, 321, 333, 447, 687, 713, 778 |
| BfmI | CTRYAG | 1 cut(s) | 751 |
| BfoI | RGCGCY | 2 cut(s) | 541, 778 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 569 |
| BisI | GCNGC | 7 cut(s) | 132, 396, 480, 536, 573, 576, 745 |
| BlsI | GCNGC | 7 cut(s) | 133, 397, 481, 537, 574, 577, 746 |
| BmcAI | AGTACT | 1 cut(s) | 34 |
| Bme1390I | CCNGG | 3 cut(s) | 45, 378, 580 |
| BmgT120I | GGNCC | 1 cut(s) | 673 |
| BmiI | GGNNCC | 1 cut(s) | 674 |
| BmrFI | CCNGG | 3 cut(s) | 45, 378, 580 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 391, 423 |
| BpuEI | CTTGAG | 3 cut(s) | 444, 650, 755 |
| BpuMI | CCSGG | 1 cut(s) | 580 |
| BsaHI | GRCGYC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 1 cut(s) | 676 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 229 |
| Bse1I | ACTGG | 1 cut(s) | 458 |
| Bse3DI | GCAATG | 1 cut(s) | 603 |
| BseBI | CCWGG | 2 cut(s) | 45, 378 |
| BseDI | CCNNGG | 1 cut(s) | 676 |
| BseGI | GGATG | 3 cut(s) | 106, 436, 508 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BseMI | GCAATG | 1 cut(s) | 603 |
| BseMII | CTCAG | 3 cut(s) | 110, 173, 422 |
| BseNI | ACTGG | 1 cut(s) | 458 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 5 cut(s) | 118, 407, 466, 559, 562 |
| BsgI | GTGCAG | 1 cut(s) | 708 |
| Bsh1285I | CGRYCG | 1 cut(s) | 696 |
| BshFI | GGCC | 3 cut(s) | 264, 675, 747 |
| BsiEI | CGRYCG | 1 cut(s) | 696 |
| BsiHKAI | GWGCWC | 3 cut(s) | 97, 222, 280 |
| BsiSI | CCGG | 1 cut(s) | 579 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BsmAI | GTCTC | 2 cut(s) | 77, 227 |
| BsmI | GAATGC | 1 cut(s) | 471 |
| BsnI | GGCC | 3 cut(s) | 264, 675, 747 |
| Bsp1286I | GDGCHC | 4 cut(s) | 97, 202, 222, 280 |
| Bsp143I | GATC | 3 cut(s) | 683, 693, 766 |
| Bsp19I | CCATGG | 1 cut(s) | 676 |
| BspACI | CCGC | 5 cut(s) | 224, 535, 583, 717, 744 |
| BspANI | GGCC | 3 cut(s) | 264, 675, 747 |
| BspCNI | CTCAG | 3 cut(s) | 109, 172, 421 |
| BspLI | GGNNCC | 1 cut(s) | 674 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspPI | GGATC | 1 cut(s) | 691 |
| BsrDI | GCAATG | 1 cut(s) | 603 |
| BsrI | ACTGG | 1 cut(s) | 458 |
| BssECI | CCNNGG | 1 cut(s) | 676 |
| BssMI | GATC | 3 cut(s) | 683, 693, 766 |
| BssNI | GRCGYC | 1 cut(s) | 704 |
| BssT1I | CCWWGG | 1 cut(s) | 676 |
| Bst2UI | CCWGG | 2 cut(s) | 45, 378 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 487 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 1 cut(s) | 469 |
| BstDEI | CTNAG | 4 cut(s) | 96, 159, 177, 408 |
| BstDSI | CCRYGG | 1 cut(s) | 676 |
| BstF5I | GGATG | 3 cut(s) | 106, 436, 508 |
| BstH2I | RGCGCY | 2 cut(s) | 541, 778 |
| BstHHI | GCGC | 2 cut(s) | 540, 777 |
| BstKTI | GATC | 3 cut(s) | 686, 696, 769 |
| BstMAI | GTCTC | 2 cut(s) | 77, 227 |
| BstMBI | GATC | 3 cut(s) | 683, 693, 766 |
| BstMCI | CGRYCG | 1 cut(s) | 696 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 155, 569 |
| BstNI | CCWGG | 2 cut(s) | 45, 378 |
| BstNSI | RCATGY | 1 cut(s) | 312 |
| BstSCI | CCNGG | 3 cut(s) | 43, 376, 578 |
| BstSFI | CTRYAG | 1 cut(s) | 751 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstV1I | GCAGC | 5 cut(s) | 118, 407, 466, 559, 562 |
| BstX2I | RGATCY | 1 cut(s) | 683 |
| BstYI | RGATCY | 1 cut(s) | 683 |
| BsuRI | GGCC | 3 cut(s) | 264, 675, 747 |
| BtgI | CCRYGG | 1 cut(s) | 676 |
| BtsCI | GGATG | 3 cut(s) | 106, 436, 508 |
| BtsI | GCAGTG | 1 cut(s) | 769 |
| BtsIMutI | CAGTG | 2 cut(s) | 451, 769 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 1 cut(s) | 469 |
| CfoI | GCGC | 2 cut(s) | 540, 777 |
| Cfr13I | GGNCC | 1 cut(s) | 673 |
| CseI | GACGC | 1 cut(s) | 693 |
| Csp6I | GTAC | 2 cut(s) | 33, 294 |
| CviAII | CATG | 4 cut(s) | 309, 560, 603, 677 |
| CviQI | GTAC | 2 cut(s) | 33, 294 |
| DdeI | CTNAG | 4 cut(s) | 96, 159, 177, 408 |
| DpnI | GATC | 3 cut(s) | 685, 695, 768 |
| DpnII | GATC | 3 cut(s) | 683, 693, 766 |
| EaeI | YGGCCR | 2 cut(s) | 262, 745 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 1 cut(s) | 676 |
| Eco24I | GRGCYC | 1 cut(s) | 97 |
| Eco53kI | GAGCTC | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 1 cut(s) | 108 |
| EcoICRI | GAGCTC | 1 cut(s) | 95 |
| EcoRI | GAATTC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 2 cut(s) | 43, 376 |
| EcoT14I | CCWWGG | 1 cut(s) | 676 |
| EcoT38I | GRGCYC | 1 cut(s) | 97 |
| ErhI | CCWWGG | 1 cut(s) | 676 |
| FaeI | CATG | 4 cut(s) | 312, 563, 606, 680 |
| FatI | CATG | 4 cut(s) | 308, 559, 602, 676 |
| FauI | CCCGC | 2 cut(s) | 231, 576 |
| Fnu4HI | GCNGC | 7 cut(s) | 132, 396, 480, 536, 573, 576, 745 |
| FokI | GGATG | 3 cut(s) | 93, 443, 515 |
| FriOI | GRGCYC | 1 cut(s) | 97 |
| Fsp4HI | GCNGC | 7 cut(s) | 132, 396, 480, 536, 573, 576, 745 |
| FspBI | CTAG | 7 cut(s) | 111, 321, 333, 447, 687, 713, 778 |
| GlaI | GCGC | 2 cut(s) | 539, 776 |
| GluI | GCNGC | 7 cut(s) | 132, 396, 480, 536, 573, 576, 745 |
| HaeII | RGCGCY | 2 cut(s) | 541, 778 |
| HaeIII | GGCC | 3 cut(s) | 264, 675, 747 |
| HapII | CCGG | 1 cut(s) | 579 |
| HgaI | GACGC | 1 cut(s) | 693 |
| HhaI | GCGC | 2 cut(s) | 540, 777 |
| Hin1I | GRCGYC | 1 cut(s) | 704 |
| Hin1II | CATG | 4 cut(s) | 312, 563, 606, 680 |
| Hin6I | GCGC | 2 cut(s) | 538, 775 |
| HinP1I | GCGC | 2 cut(s) | 538, 775 |
| HindIII | AAGCTT | 1 cut(s) | 465 |
| HinfI | GANTC | 3 cut(s) | 40, 400, 457 |
| HpaII | CCGG | 1 cut(s) | 579 |
| HphI | GGTGA | 2 cut(s) | 293, 548 |
| Hpy166II | GTNNAC | 2 cut(s) | 241, 556 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 162, 342, 616 |
| Hpy188III | TCNNGA | 3 cut(s) | 461, 687, 734 |
| Hpy8I | GTNNAC | 2 cut(s) | 241, 556 |
| Hpy99I | CGWCG | 3 cut(s) | 547, 709, 774 |
| HpyAV | CCTTC | 2 cut(s) | 83, 533 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 487 |
| HpyCH4V | TGCA | 5 cut(s) | 65, 134, 366, 471, 725 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 155, 569 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 159, 177, 408 |
| Hsp92I | GRCGYC | 1 cut(s) | 704 |
| Hsp92II | CATG | 4 cut(s) | 312, 563, 606, 680 |
| HspAI | GCGC | 2 cut(s) | 538, 775 |
| Kzo9I | GATC | 3 cut(s) | 683, 693, 766 |
| LmnI | GCTCC | 2 cut(s) | 92, 217 |
| Lsp1109I | GCAGC | 5 cut(s) | 118, 407, 466, 559, 562 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 7 cut(s) | 111, 321, 333, 447, 687, 713, 778 |
| MaeIII | GTNAC | 1 cut(s) | 442 |
| MalI | GATC | 3 cut(s) | 685, 695, 768 |
| MboI | GATC | 3 cut(s) | 683, 693, 766 |
| MboII | GAAGA | 4 cut(s) | 12, 92, 133, 181 |
| MflI | RGATCY | 1 cut(s) | 683 |
| MhlI | GDGCHC | 4 cut(s) | 97, 202, 222, 280 |
| MlsI | TGGCCA | 1 cut(s) | 264 |
| MluCI | AATT | 5 cut(s) | 10, 25, 246, 313, 389 |
| MluNI | TGGCCA | 1 cut(s) | 264 |
| MlyI | GAGTC | 3 cut(s) | 49, 409, 451 |
| MmeI | TCCRAC | 1 cut(s) | 170 |
| MnlI | CCTC | 5 cut(s) | 138, 314, 349, 647, 730 |
| Mox20I | TGGCCA | 1 cut(s) | 264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 334 |
| MscI | TGGCCA | 1 cut(s) | 264 |
| MseI | TTAA | 2 cut(s) | 345, 516 |
| MslI | CAYNNNNRTG | 1 cut(s) | 212 |
| Msp20I | TGGCCA | 1 cut(s) | 264 |
| MspA1I | CMGCKG | 1 cut(s) | 535 |
| MspI | CCGG | 1 cut(s) | 579 |
| MspR9I | CCNGG | 3 cut(s) | 45, 378, 580 |
| Mva1269I | GAATGC | 1 cut(s) | 471 |
| MvaI | CCWGG | 2 cut(s) | 45, 378 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 155, 569 |
| NciI | CCSGG | 1 cut(s) | 580 |
| NcoI | CCATGG | 1 cut(s) | 676 |
| NdeII | GATC | 3 cut(s) | 683, 693, 766 |
| NlaIII | CATG | 4 cut(s) | 312, 563, 606, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 674 |
| NspI | RCATGY | 1 cut(s) | 312 |
| PctI | GAATGC | 1 cut(s) | 471 |
| PdmI | GAANNNNTTC | 1 cut(s) | 334 |
| PfoI | TCCNGGA | 1 cut(s) | 43 |
| PkrI | GCNGC | 7 cut(s) | 133, 397, 481, 537, 574, 577, 746 |
| Ple19I | CGATCG | 1 cut(s) | 696 |
| PleI | GAGTC | 3 cut(s) | 48, 408, 451 |
| PpsI | GAGTC | 3 cut(s) | 48, 408, 451 |
| Psp124BI | GAGCTC | 1 cut(s) | 97 |
| Psp6I | CCWGG | 2 cut(s) | 43, 376 |
| PspGI | CCWGG | 2 cut(s) | 43, 376 |
| PspN4I | GGNNCC | 1 cut(s) | 674 |
| PspPI | GGNCC | 1 cut(s) | 673 |
| PsuI | RGATCY | 1 cut(s) | 683 |
| PvuI | CGATCG | 1 cut(s) | 696 |
| RsaI | GTAC | 2 cut(s) | 34, 295 |
| RsaNI | GTAC | 2 cut(s) | 33, 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 212 |
| SacI | GAGCTC | 1 cut(s) | 97 |
| SaqAI | TTAA | 2 cut(s) | 345, 516 |
| SatI | GCNGC | 7 cut(s) | 132, 396, 480, 536, 573, 576, 745 |
| Sau3AI | GATC | 3 cut(s) | 683, 693, 766 |
| Sau96I | GGNCC | 1 cut(s) | 673 |
| ScaI | AGTACT | 1 cut(s) | 34 |
| SchI | GAGTC | 3 cut(s) | 49, 409, 451 |
| ScrFI | CCNGG | 3 cut(s) | 45, 378, 580 |
| SduI | GDGCHC | 4 cut(s) | 97, 202, 222, 280 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| SfcI | CTRYAG | 1 cut(s) | 751 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 212 |
| SmlI | CTYRAG | 3 cut(s) | 459, 629, 734 |
| SmoI | CTYRAG | 3 cut(s) | 459, 629, 734 |
| SpeI | ACTAGT | 2 cut(s) | 320, 332 |
| Sse9I | AATT | 5 cut(s) | 10, 25, 246, 313, 389 |
| SsiI | CCGC | 5 cut(s) | 224, 535, 583, 717, 744 |
| SspMI | CTAG | 7 cut(s) | 111, 321, 333, 447, 687, 713, 778 |
| SstI | GAGCTC | 1 cut(s) | 97 |
| StyD4I | CCNGG | 3 cut(s) | 43, 376, 578 |
| StyI | CCWWGG | 1 cut(s) | 676 |
| TaaI | ACNGT | 2 cut(s) | 238, 487 |
| TaqI | TCGA | 2 cut(s) | 317, 769 |
| TasI | AATT | 5 cut(s) | 10, 25, 246, 313, 389 |
| TatI | WGTACW | 2 cut(s) | 32, 293 |
| TauI | GCSGC | 2 cut(s) | 538, 747 |
| Tru1I | TTAA | 2 cut(s) | 345, 516 |
| Tru9I | TTAA | 2 cut(s) | 345, 516 |
| TscAI | CASTG | 2 cut(s) | 458, 769 |
| TseI | GCWGC | 5 cut(s) | 131, 395, 479, 572, 575 |
| TspDTI | ATGAA | 3 cut(s) | 196, 447, 519 |
| TspGWI | ACGGA | 1 cut(s) | 258 |
| TspRI | CASTG | 2 cut(s) | 458, 769 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XbaI | TCTAGA | 1 cut(s) | 686 |
| XceI | RCATGY | 1 cut(s) | 312 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 755 |
| XmnI | GAANNNNTTC | 1 cut(s) | 334 |
| XspI | CTAG | 7 cut(s) | 111, 321, 333, 447, 687, 713, 778 |
| ZrmI | AGTACT | 1 cut(s) | 34 |