Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 383 - 483 | 7.8e-14 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1028 |
| AciI | CCGC | 1 cut(s) | 815 |
| AclWI | GGATC | 4 cut(s) | 86, 435, 1316, 1428 |
| AcsI | RAATTY | 8 cut(s) | 78, 357, 389, 546, 553, 721, 928, 962 |
| AfaI | GTAC | 4 cut(s) | 109, 226, 272, 1168 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 96, 468, 843, 921, 1052, 1441 |
| AgsI | TTSAA | 8 cut(s) | 482, 872, 961, 1025, 1132, 1291, 1524, 1558 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1458, 1490 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1504, 1536 |
| Alw21I | GWGCWC | 1 cut(s) | 343 |
| Alw26I | GTCTC | 3 cut(s) | 456, 1102, 1202 |
| AlwI | GGATC | 4 cut(s) | 86, 435, 1316, 1428 |
| AoxI | GGCC | 1 cut(s) | 1055 |
| ApoI | RAATTY | 8 cut(s) | 78, 357, 389, 546, 553, 721, 928, 962 |
| AseI | ATTAAT | 1 cut(s) | 489 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 361, 791 |
| AspA2I | CCTAGG | 1 cut(s) | 95 |
| AspS9I | GGNCC | 2 cut(s) | 499, 1055 |
| AsuC2I | CCSGG | 1 cut(s) | 1581 |
| AsuHPI | GGTGA | 5 cut(s) | 640, 1049, 1187, 1233, 1490 |
| AvaII | GGWCC | 1 cut(s) | 499 |
| AvrII | CCTAGG | 1 cut(s) | 95 |
| BanI | GGYRCC | 1 cut(s) | 1028 |
| BanII | GRGCYC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 1 cut(s) | 343 |
| BccI | CCATC | 4 cut(s) | 35, 418, 764, 1367 |
| BciVI | GTATCC | 1 cut(s) | 159 |
| BcnI | CCSGG | 1 cut(s) | 1581 |
| BcoDI | GTCTC | 3 cut(s) | 456, 1102, 1202 |
| BfaI | CTAG | 5 cut(s) | 96, 570, 884, 921, 1518 |
| BfmI | CTRYAG | 2 cut(s) | 228, 588 |
| BfuI | GTATCC | 1 cut(s) | 159 |
| BisI | GCNGC | 1 cut(s) | 816 |
| BlnI | CCTAGG | 1 cut(s) | 95 |
| BlpI | GCTNAGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 1 cut(s) | 817 |
| BmcAI | AGTACT | 1 cut(s) | 1168 |
| Bme1390I | CCNGG | 1 cut(s) | 1581 |
| Bme18I | GGWCC | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 2 cut(s) | 499, 1055 |
| BmiI | GGNNCC | 1 cut(s) | 1030 |
| BmrFI | CCNGG | 1 cut(s) | 1581 |
| BmsI | GCATC | 4 cut(s) | 454, 901, 988, 1247 |
| BoxI | GACNNNNGTC | 1 cut(s) | 138 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 594 |
| BpuEI | CTTGAG | 5 cut(s) | 225, 1126, 1247, 1358, 1479 |
| BpuMI | CCSGG | 1 cut(s) | 1581 |
| Bsa29I | ATCGAT | 1 cut(s) | 676 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1326 |
| BsaI | GGTCTC | 2 cut(s) | 1102, 1202 |
| BsaJI | CCNNGG | 2 cut(s) | 95, 1032 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 96, 468, 843, 921, 1052, 1441 |
| Bse118I | RCCGGY | 1 cut(s) | 1060 |
| Bse3DI | GCAATG | 1 cut(s) | 1305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1326 |
| BseCI | ATCGAT | 1 cut(s) | 676 |
| BseDI | CCNNGG | 2 cut(s) | 95, 1032 |
| BseGI | GGATG | 2 cut(s) | 46, 391 |
| BseJI | GATNNNNATC | 1 cut(s) | 1326 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 96, 468, 843, 921, 1052, 1441 |
| BseMI | GCAATG | 1 cut(s) | 1305 |
| BseMII | CTCAG | 2 cut(s) | 207, 1221 |
| BseRI | GAGGAG | 1 cut(s) | 299 |
| BsgI | GTGCAG | 1 cut(s) | 492 |
| BshFI | GGCC | 1 cut(s) | 1057 |
| BshNI | GGYRCC | 1 cut(s) | 1028 |
| BshVI | ATCGAT | 1 cut(s) | 676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 343 |
| BsiSI | CCGG | 2 cut(s) | 1061, 1580 |
| BslFI | GGGAC | 2 cut(s) | 677, 1525 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 96, 468, 843, 921, 1052, 1441 |
| BsmAI | GTCTC | 3 cut(s) | 456, 1102, 1202 |
| BsmFI | GGGAC | 2 cut(s) | 677, 1525 |
| BsmI | GAATGC | 2 cut(s) | 239, 817 |
| BsnI | GGCC | 1 cut(s) | 1057 |
| Bso31I | GGTCTC | 2 cut(s) | 1102, 1202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 343 |
| Bsp143I | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 594 |
| BspACI | CCGC | 1 cut(s) | 815 |
| BspANI | GGCC | 1 cut(s) | 1057 |
| BspCNI | CTCAG | 2 cut(s) | 208, 1222 |
| BspDI | ATCGAT | 1 cut(s) | 676 |
| BspLI | GGNNCC | 1 cut(s) | 1030 |
| BspPI | GGATC | 4 cut(s) | 86, 435, 1316, 1428 |
| BspQI | GCTCTTC | 2 cut(s) | 240, 348 |
| BspT107I | GGYRCC | 1 cut(s) | 1028 |
| BspTNI | GGTCTC | 2 cut(s) | 1102, 1202 |
| BsrDI | GCAATG | 1 cut(s) | 1305 |
| BsrFI | RCCGGY | 1 cut(s) | 1060 |
| BssAI | RCCGGY | 1 cut(s) | 1060 |
| BssECI | CCNNGG | 2 cut(s) | 95, 1032 |
| BssMI | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| BssT1I | CCWWGG | 2 cut(s) | 95, 1032 |
| Bst4CI | ACNGT | 5 cut(s) | 229, 646, 652, 1159, 1414 |
| Bst6I | CTCTTC | 3 cut(s) | 240, 348, 1449 |
| BstDEI | CTNAG | 3 cut(s) | 216, 594, 1230 |
| BstEII | GGTNACC | 1 cut(s) | 646 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1439 |
| BstF5I | GGATG | 2 cut(s) | 46, 391 |
| BstKTI | GATC | 6 cut(s) | 94, 430, 676, 1324, 1423, 1586 |
| BstMAI | GTCTC | 3 cut(s) | 456, 1102, 1202 |
| BstMBI | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1576 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 138 |
| BstPI | GGTNACC | 1 cut(s) | 646 |
| BstSCI | CCNGG | 1 cut(s) | 1579 |
| BstSFI | CTRYAG | 2 cut(s) | 228, 588 |
| BstX2I | RGATCY | 1 cut(s) | 1420 |
| BstYI | RGATCY | 1 cut(s) | 1420 |
| Bsu15I | ATCGAT | 1 cut(s) | 676 |
| BsuI | GTATCC | 1 cut(s) | 159 |
| BsuRI | GGCC | 1 cut(s) | 1057 |
| BsuTUI | ATCGAT | 1 cut(s) | 676 |
| BtsCI | GGATG | 2 cut(s) | 46, 391 |
| BtsI | GCAGTG | 1 cut(s) | 504 |
| BtsIMutI | CAGTG | 1 cut(s) | 504 |
| Cfr10I | RCCGGY | 1 cut(s) | 1060 |
| Cfr13I | GGNCC | 2 cut(s) | 499, 1055 |
| ClaI | ATCGAT | 1 cut(s) | 676 |
| Csp6I | GTAC | 4 cut(s) | 108, 225, 271, 1167 |
| CviAII | CATG | 3 cut(s) | 302, 1017, 1221 |
| CviQI | GTAC | 4 cut(s) | 108, 225, 271, 1167 |
| DdeI | CTNAG | 3 cut(s) | 216, 594, 1230 |
| DpnI | GATC | 6 cut(s) | 93, 429, 675, 1323, 1422, 1585 |
| DpnII | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| DraI | TTTAAA | 2 cut(s) | 202, 552 |
| Eam1104I | CTCTTC | 3 cut(s) | 240, 348, 1449 |
| EarI | CTCTTC | 3 cut(s) | 240, 348, 1449 |
| Ecl136II | GAGCTC | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 2 cut(s) | 95, 1032 |
| Eco24I | GRGCYC | 1 cut(s) | 343 |
| Eco31I | GGTCTC | 2 cut(s) | 1102, 1202 |
| Eco47I | GGWCC | 1 cut(s) | 499 |
| Eco53kI | GAGCTC | 1 cut(s) | 341 |
| Eco91I | GGTNACC | 1 cut(s) | 646 |
| EcoICRI | GAGCTC | 1 cut(s) | 341 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1439 |
| EcoO65I | GGTNACC | 1 cut(s) | 646 |
| EcoRI | GAATTC | 2 cut(s) | 357, 928 |
| EcoT14I | CCWWGG | 2 cut(s) | 95, 1032 |
| EcoT38I | GRGCYC | 1 cut(s) | 343 |
| ErhI | CCWWGG | 2 cut(s) | 95, 1032 |
| FaeI | CATG | 3 cut(s) | 305, 1020, 1224 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1409, 1441 |
| FaqI | GGGAC | 2 cut(s) | 677, 1525 |
| FatI | CATG | 3 cut(s) | 301, 1016, 1220 |
| FauNDI | CATATG | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 1 cut(s) | 816 |
| FokI | GGATG | 2 cut(s) | 53, 398 |
| FriOI | GRGCYC | 1 cut(s) | 343 |
| Fsp4HI | GCNGC | 1 cut(s) | 816 |
| FspBI | CTAG | 5 cut(s) | 96, 570, 884, 921, 1518 |
| GluI | GCNGC | 1 cut(s) | 816 |
| HaeIII | GGCC | 1 cut(s) | 1057 |
| HapII | CCGG | 2 cut(s) | 1061, 1580 |
| Hin1II | CATG | 3 cut(s) | 305, 1020, 1224 |
| HincII | GTYRAC | 1 cut(s) | 1351 |
| HindII | GTYRAC | 1 cut(s) | 1351 |
| HindIII | AAGCTT | 2 cut(s) | 395, 972 |
| HinfI | GANTC | 4 cut(s) | 16, 565, 637, 1291 |
| HpaII | CCGG | 2 cut(s) | 1061, 1580 |
| HphI | GGTGA | 5 cut(s) | 640, 1049, 1187, 1233, 1490 |
| Hpy166II | GTNNAC | 2 cut(s) | 225, 1351 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 753, 810, 1231 |
| Hpy188III | TCNNGA | 5 cut(s) | 242, 940, 1105, 1319, 1367 |
| Hpy8I | GTNNAC | 2 cut(s) | 225, 1351 |
| HpyAV | CCTTC | 7 cut(s) | 22, 372, 1019, 1046, 1411, 1455, 1558 |
| HpyCH4III | ACNGT | 5 cut(s) | 229, 646, 652, 1159, 1414 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1576 |
| HpyF3I | CTNAG | 3 cut(s) | 216, 594, 1230 |
| Hsp92II | CATG | 3 cut(s) | 305, 1020, 1224 |
| Kzo9I | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| LguI | GCTCTTC | 2 cut(s) | 240, 348 |
| LmnI | GCTCC | 3 cut(s) | 286, 1087, 1567 |
| LpnPI | CCDG | 1 cut(s) | 1074 |
| LweI | GCATC | 4 cut(s) | 454, 901, 988, 1247 |
| MaeI | CTAG | 5 cut(s) | 96, 570, 884, 921, 1518 |
| MaeIII | GTNAC | 1 cut(s) | 646 |
| MalI | GATC | 6 cut(s) | 93, 429, 675, 1323, 1422, 1585 |
| MboI | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| MboII | GAAGA | 9 cut(s) | 112, 257, 335, 646, 730, 799, 1004, 1007, 1466 |
| MfeI | CAATTG | 1 cut(s) | 431 |
| MflI | RGATCY | 1 cut(s) | 1420 |
| MhlI | GDGCHC | 1 cut(s) | 343 |
| MmeI | TCCRAC | 2 cut(s) | 597, 927 |
| MroXI | GAANNNNTTC | 2 cut(s) | 361, 791 |
| MseI | TTAA | 9 cut(s) | 51, 120, 201, 393, 489, 551, 758, 828, 858 |
| MspI | CCGG | 2 cut(s) | 1061, 1580 |
| MspR9I | CCNGG | 1 cut(s) | 1581 |
| MunI | CAATTG | 1 cut(s) | 431 |
| Mva1269I | GAATGC | 2 cut(s) | 239, 817 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1576 |
| NciI | CCSGG | 1 cut(s) | 1581 |
| NdeI | CATATG | 1 cut(s) | 129 |
| NdeII | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| NlaIII | CATG | 3 cut(s) | 305, 1020, 1224 |
| NlaIV | GGNNCC | 1 cut(s) | 1030 |
| NmuCI | GTSAC | 1 cut(s) | 646 |
| PciSI | GCTCTTC | 2 cut(s) | 240, 348 |
| PctI | GAATGC | 2 cut(s) | 239, 817 |
| PdmI | GAANNNNTTC | 2 cut(s) | 361, 791 |
| PfeI | GAWTC | 4 cut(s) | 16, 565, 637, 1291 |
| PkrI | GCNGC | 1 cut(s) | 817 |
| PshAI | GACNNNNGTC | 1 cut(s) | 138 |
| PshBI | ATTAAT | 1 cut(s) | 489 |
| Psp124BI | GAGCTC | 1 cut(s) | 343 |
| PspEI | GGTNACC | 1 cut(s) | 646 |
| PspN4I | GGNNCC | 1 cut(s) | 1030 |
| PspPI | GGNCC | 2 cut(s) | 499, 1055 |
| PsuI | RGATCY | 1 cut(s) | 1420 |
| RsaI | GTAC | 4 cut(s) | 109, 226, 272, 1168 |
| RsaNI | GTAC | 4 cut(s) | 108, 225, 271, 1167 |
| SacI | GAGCTC | 1 cut(s) | 343 |
| SapI | GCTCTTC | 2 cut(s) | 240, 348 |
| SaqAI | TTAA | 9 cut(s) | 51, 120, 201, 393, 489, 551, 758, 828, 858 |
| SatI | GCNGC | 1 cut(s) | 816 |
| Sau3AI | GATC | 6 cut(s) | 91, 427, 673, 1321, 1420, 1583 |
| Sau96I | GGNCC | 2 cut(s) | 499, 1055 |
| ScaI | AGTACT | 1 cut(s) | 1168 |
| ScrFI | CCNGG | 1 cut(s) | 1581 |
| SduI | GDGCHC | 1 cut(s) | 343 |
| SfaNI | GCATC | 4 cut(s) | 454, 901, 988, 1247 |
| SfcI | CTRYAG | 2 cut(s) | 228, 588 |
| SinI | GGWCC | 1 cut(s) | 499 |
| SmlI | CTYRAG | 5 cut(s) | 240, 1105, 1262, 1337, 1494 |
| SmoI | CTYRAG | 5 cut(s) | 240, 1105, 1262, 1337, 1494 |
| SsiI | CCGC | 1 cut(s) | 815 |
| SspI | AATATT | 1 cut(s) | 160 |
| SspMI | CTAG | 5 cut(s) | 96, 570, 884, 921, 1518 |
| SstI | GAGCTC | 1 cut(s) | 343 |
| StyD4I | CCNGG | 1 cut(s) | 1579 |
| StyI | CCWWGG | 2 cut(s) | 95, 1032 |
| TaaI | ACNGT | 5 cut(s) | 229, 646, 652, 1159, 1414 |
| TaqI | TCGA | 1 cut(s) | 676 |
| TatI | WGTACW | 3 cut(s) | 224, 270, 1166 |
| TauI | GCSGC | 1 cut(s) | 818 |
| TfiI | GAWTC | 4 cut(s) | 16, 565, 637, 1291 |
| Tru1I | TTAA | 9 cut(s) | 51, 120, 201, 393, 489, 551, 758, 828, 858 |
| Tru9I | TTAA | 9 cut(s) | 51, 120, 201, 393, 489, 551, 758, 828, 858 |
| TscAI | CASTG | 1 cut(s) | 511 |
| TseFI | GTSAC | 1 cut(s) | 646 |
| Tsp45I | GTSAC | 1 cut(s) | 646 |
| TspDTI | ATGAA | 9 cut(s) | 185, 402, 784, 800, 1134, 1151, 1294, 1397, 1401 |
| TspGWI | ACGGA | 1 cut(s) | 1553 |
| TspRI | CASTG | 1 cut(s) | 511 |
| VpaK11BI | GGWCC | 1 cut(s) | 499 |
| VspI | ATTAAT | 1 cut(s) | 489 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1439 |
| XapI | RAATTY | 8 cut(s) | 78, 357, 389, 546, 553, 721, 928, 962 |
| XmaJI | CCTAGG | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 2 cut(s) | 361, 791 |
| XspI | CTAG | 5 cut(s) | 96, 570, 884, 921, 1518 |
| ZrmI | AGTACT | 1 cut(s) | 1168 |