BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1367 |
| AccI | GTMKAC | 1 cut(s) | 837 |
| AciI | CCGC | 5 cut(s) | 140, 206, 755, 1032, 1165 |
| AclWI | GGATC | 3 cut(s) | 68, 1037, 1050 |
| AcoI | YGGCCR | 1 cut(s) | 1410 |
| AcsI | RAATTY | 6 cut(s) | 176, 564, 718, 822, 927, 1070 |
| AcuI | CTGAAG | 2 cut(s) | 753, 1242 |
| AcvI | CACGTG | 1 cut(s) | 1400 |
| AfaI | GTAC | 3 cut(s) | 789, 1189, 1453 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 256, 287, 943 |
| AflIII | ACRYGT | 1 cut(s) | 1240 |
| AgsI | TTSAA | 8 cut(s) | 160, 569, 818, 872, 982, 1054, 1070, 1294 |
| AjnI | CCWGG | 1 cut(s) | 1495 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1034, 1066 |
| Alw21I | GWGCWC | 3 cut(s) | 379, 1361, 1525 |
| Alw26I | GTCTC | 2 cut(s) | 320, 1231 |
| AlwI | GGATC | 3 cut(s) | 68, 1037, 1050 |
| AoxI | GGCC | 2 cut(s) | 1131, 1410 |
| ApeKI | GCWGC | 3 cut(s) | 1034, 1115, 1118 |
| ApoI | RAATTY | 6 cut(s) | 176, 564, 718, 822, 927, 1070 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 479 |
| AspA2I | CCTAGG | 1 cut(s) | 1538 |
| AspS9I | GGNCC | 2 cut(s) | 1131, 1457 |
| AsuHPI | GGTGA | 1 cut(s) | 899 |
| AvaII | GGWCC | 1 cut(s) | 1457 |
| AvrII | CCTAGG | 1 cut(s) | 1538 |
| BaeGI | GKGCMC | 1 cut(s) | 55 |
| BalI | TGGCCA | 1 cut(s) | 1412 |
| BamHI | GGATCC | 1 cut(s) | 1042 |
| BanI | GGYRCC | 1 cut(s) | 1367 |
| BauI | CACGAG | 1 cut(s) | 372 |
| BbrPI | CACGTG | 1 cut(s) | 1400 |
| Bbv12I | GWGCWC | 3 cut(s) | 379, 1361, 1525 |
| BbvI | GCAGC | 3 cut(s) | 1046, 1102, 1130 |
| BccI | CCATC | 5 cut(s) | 161, 230, 553, 732, 1094 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1184, 1218 |
| BciT130I | CCWGG | 1 cut(s) | 1497 |
| BciVI | GTATCC | 1 cut(s) | 1386 |
| BclI | TGATCA | 2 cut(s) | 517, 577 |
| BcoDI | GTCTC | 2 cut(s) | 320, 1231 |
| BfaI | CTAG | 3 cut(s) | 969, 1230, 1539 |
| BfmI | CTRYAG | 3 cut(s) | 693, 1116, 1362 |
| BfuI | GTATCC | 1 cut(s) | 1386 |
| BisI | GCNGC | 3 cut(s) | 1035, 1116, 1119 |
| BlnI | CCTAGG | 1 cut(s) | 1538 |
| BlsI | GCNGC | 3 cut(s) | 1036, 1117, 1120 |
| Bme1390I | CCNGG | 1 cut(s) | 1497 |
| Bme18I | GGWCC | 1 cut(s) | 1457 |
| BmgT120I | GGNCC | 2 cut(s) | 1131, 1457 |
| BmiI | GGNNCC | 3 cut(s) | 1044, 1132, 1369 |
| BmrFI | CCNGG | 1 cut(s) | 1497 |
| BmsI | GCATC | 4 cut(s) | 889, 950, 1330, 1413 |
| BpmI | CTGGAG | 1 cut(s) | 761 |
| BpuEI | CTTGAG | 4 cut(s) | 371, 473, 697, 818 |
| BsaAI | YACGTR | 1 cut(s) | 1400 |
| BsaJI | CCNNGG | 4 cut(s) | 255, 1046, 1322, 1538 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 734, 764, 1519 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 256, 287, 943 |
| Bse1I | ACTGG | 3 cut(s) | 1313, 1418, 1459 |
| BseBI | CCWGG | 1 cut(s) | 1497 |
| BseDI | CCNNGG | 4 cut(s) | 255, 1046, 1322, 1538 |
| BseGI | GGATG | 2 cut(s) | 397, 546 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 256, 287, 943 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 3 cut(s) | 1313, 1418, 1459 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseSI | GKGCMC | 1 cut(s) | 55 |
| BseXI | GCAGC | 3 cut(s) | 1046, 1102, 1130 |
| BsgI | GTGCAG | 2 cut(s) | 647, 1116 |
| BshFI | GGCC | 2 cut(s) | 1133, 1412 |
| BshNI | GGYRCC | 1 cut(s) | 1367 |
| BsiHKAI | GWGCWC | 3 cut(s) | 379, 1361, 1525 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 256, 287, 943 |
| BsmAI | GTCTC | 2 cut(s) | 320, 1231 |
| BsmI | GAATGC | 1 cut(s) | 1445 |
| BsnI | GGCC | 2 cut(s) | 1133, 1412 |
| Bsp1286I | GDGCHC | 4 cut(s) | 55, 379, 1361, 1525 |
| Bsp1407I | TGTACA | 1 cut(s) | 1187 |
| Bsp143I | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| BspACI | CCGC | 5 cut(s) | 140, 206, 755, 1032, 1165 |
| BspANI | GGCC | 2 cut(s) | 1133, 1412 |
| BspCNI | CTCAG | 1 cut(s) | 258 |
| BspHI | TCATGA | 2 cut(s) | 418, 922 |
| BspLI | GGNNCC | 3 cut(s) | 1044, 1132, 1369 |
| BspMAI | CTGCAG | 2 cut(s) | 1120, 1366 |
| BspPI | GGATC | 3 cut(s) | 68, 1037, 1050 |
| BspT107I | GGYRCC | 1 cut(s) | 1367 |
| BsrGI | TGTACA | 1 cut(s) | 1187 |
| BsrI | ACTGG | 3 cut(s) | 1313, 1418, 1459 |
| BssECI | CCNNGG | 4 cut(s) | 255, 1046, 1322, 1538 |
| BssMI | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| BssSI | CACGAG | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 2 cut(s) | 1322, 1538 |
| Bst2BI | CACGAG | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 1497 |
| Bst4CI | ACNGT | 3 cut(s) | 296, 1146, 1187 |
| Bst6I | CTCTTC | 1 cut(s) | 772 |
| BstAUI | TGTACA | 1 cut(s) | 1187 |
| BstBAI | YACGTR | 1 cut(s) | 1400 |
| BstC8I | GCNNGC | 4 cut(s) | 1366, 1428, 1467, 1509 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 2 cut(s) | 397, 546 |
| BstKTI | GATC | 6 cut(s) | 76, 520, 580, 834, 1045, 1474 |
| BstMAI | GTCTC | 2 cut(s) | 320, 1231 |
| BstMBI | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 139, 148, 1365 |
| BstNI | CCWGG | 1 cut(s) | 1497 |
| BstNSI | RCATGY | 2 cut(s) | 1244, 1511 |
| BstSCI | CCNGG | 1 cut(s) | 1495 |
| BstSFI | CTRYAG | 3 cut(s) | 693, 1116, 1362 |
| BstSLI | GKGCMC | 1 cut(s) | 55 |
| BstV1I | GCAGC | 3 cut(s) | 1046, 1102, 1130 |
| BstX2I | RGATCY | 1 cut(s) | 1042 |
| BstYI | RGATCY | 1 cut(s) | 1042 |
| BsuI | GTATCC | 1 cut(s) | 1386 |
| BsuRI | GGCC | 2 cut(s) | 1133, 1412 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 2 cut(s) | 397, 546 |
| BtsI | GCAGTG | 2 cut(s) | 1359, 1502 |
| BtsIMutI | CAGTG | 5 cut(s) | 777, 1320, 1359, 1425, 1502 |
| Cac8I | GCNNGC | 4 cut(s) | 1366, 1428, 1467, 1509 |
| CciI | TCATGA | 2 cut(s) | 418, 922 |
| Cfr13I | GGNCC | 2 cut(s) | 1131, 1457 |
| Csp6I | GTAC | 3 cut(s) | 788, 1188, 1452 |
| CviQI | GTAC | 3 cut(s) | 788, 1188, 1452 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 6 cut(s) | 75, 519, 579, 833, 1044, 1473 |
| DpnII | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| EaeI | YGGCCR | 1 cut(s) | 1410 |
| Eam1104I | CTCTTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 1 cut(s) | 772 |
| Eco130I | CCWWGG | 2 cut(s) | 1322, 1538 |
| Eco47I | GGWCC | 1 cut(s) | 1457 |
| Eco57I | CTGAAG | 2 cut(s) | 753, 1242 |
| Eco72I | CACGTG | 1 cut(s) | 1400 |
| EcoRI | GAATTC | 2 cut(s) | 176, 564 |
| EcoRII | CCWGG | 1 cut(s) | 1495 |
| EcoT14I | CCWWGG | 2 cut(s) | 1322, 1538 |
| EcoT22I | ATGCAT | 1 cut(s) | 1345 |
| ErhI | CCWWGG | 2 cut(s) | 1322, 1538 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FauI | CCCGC | 3 cut(s) | 147, 199, 748 |
| FbaI | TGATCA | 2 cut(s) | 517, 577 |
| FblI | GTMKAC | 1 cut(s) | 837 |
| Fnu4HI | GCNGC | 3 cut(s) | 1035, 1116, 1119 |
| FokI | GGATG | 2 cut(s) | 404, 533 |
| Fsp4HI | GCNGC | 3 cut(s) | 1035, 1116, 1119 |
| FspBI | CTAG | 3 cut(s) | 969, 1230, 1539 |
| GluI | GCNGC | 3 cut(s) | 1035, 1116, 1119 |
| GsuI | CTGGAG | 1 cut(s) | 761 |
| HaeIII | GGCC | 2 cut(s) | 1133, 1412 |
| HincII | GTYRAC | 2 cut(s) | 949, 1486 |
| HindII | GTYRAC | 2 cut(s) | 949, 1486 |
| HindIII | AAGCTT | 1 cut(s) | 984 |
| HinfI | GANTC | 6 cut(s) | 496, 541, 950, 1196, 1217, 1246 |
| HpaI | GTTAAC | 1 cut(s) | 1486 |
| HphI | GGTGA | 1 cut(s) | 899 |
| Hpy166II | GTNNAC | 6 cut(s) | 259, 838, 949, 1183, 1284, 1486 |
| Hpy188III | TCNNGA | 9 cut(s) | 77, 419, 676, 740, 797, 923, 1054, 1276, 1304 |
| Hpy8I | GTNNAC | 6 cut(s) | 259, 838, 949, 1183, 1284, 1486 |
| HpyAV | CCTTC | 2 cut(s) | 812, 1217 |
| HpyCH4III | ACNGT | 3 cut(s) | 296, 1146, 1187 |
| HpyCH4IV | ACGT | 2 cut(s) | 1065, 1399 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 139, 148, 1365 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| HpySE526I | ACGT | 2 cut(s) | 1065, 1399 |
| Ksp22I | TGATCA | 2 cut(s) | 517, 577 |
| KspAI | GTTAAC | 1 cut(s) | 1486 |
| Kzo9I | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| LmnI | GCTCC | 3 cut(s) | 703, 1356, 1527 |
| Lsp1109I | GCAGC | 3 cut(s) | 1046, 1102, 1130 |
| LweI | GCATC | 4 cut(s) | 889, 950, 1330, 1413 |
| MaeI | CTAG | 3 cut(s) | 969, 1230, 1539 |
| MaeII | ACGT | 2 cut(s) | 1065, 1399 |
| MaeIII | GTNAC | 4 cut(s) | 712, 989, 1263, 1317 |
| MalI | GATC | 6 cut(s) | 75, 519, 579, 833, 1044, 1473 |
| MboI | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| MboII | GAAGA | 7 cut(s) | 407, 484, 487, 550, 759, 820, 1319 |
| MfeI | CAATTG | 2 cut(s) | 521, 1289 |
| MflI | RGATCY | 1 cut(s) | 1042 |
| MhlI | GDGCHC | 4 cut(s) | 55, 379, 1361, 1525 |
| MlsI | TGGCCA | 1 cut(s) | 1412 |
| MluNI | TGGCCA | 1 cut(s) | 1412 |
| MlyI | GAGTC | 2 cut(s) | 944, 1205 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| Mox20I | TGGCCA | 1 cut(s) | 1412 |
| Mph1103I | ATGCAT | 1 cut(s) | 1345 |
| MroXI | GAANNNNTTC | 1 cut(s) | 479 |
| MscI | TGGCCA | 1 cut(s) | 1412 |
| MseI | TTAA | 7 cut(s) | 65, 147, 213, 648, 660, 1089, 1485 |
| MslI | CAYNNNNRTG | 4 cut(s) | 372, 423, 912, 1418 |
| Msp20I | TGGCCA | 1 cut(s) | 1412 |
| MspA1I | CMGCKG | 4 cut(s) | 755, 773, 1121, 1469 |
| MspR9I | CCNGG | 1 cut(s) | 1497 |
| MunI | CAATTG | 2 cut(s) | 521, 1289 |
| Mva1269I | GAATGC | 1 cut(s) | 1445 |
| MvaI | CCWGG | 1 cut(s) | 1497 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 139, 148, 1365 |
| NdeII | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| NlaIV | GGNNCC | 3 cut(s) | 1044, 1132, 1369 |
| NmuCI | GTSAC | 2 cut(s) | 712, 989 |
| NsiI | ATGCAT | 1 cut(s) | 1345 |
| NspI | RCATGY | 2 cut(s) | 1244, 1511 |
| PaeI | GCATGC | 1 cut(s) | 1511 |
| PagI | TCATGA | 2 cut(s) | 418, 922 |
| PciI | ACATGT | 1 cut(s) | 1240 |
| PctI | GAATGC | 1 cut(s) | 1445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 4 cut(s) | 496, 541, 1217, 1246 |
| PkrI | GCNGC | 3 cut(s) | 1036, 1117, 1120 |
| PleI | GAGTC | 2 cut(s) | 944, 1204 |
| PmaCI | CACGTG | 1 cut(s) | 1400 |
| PmlI | CACGTG | 1 cut(s) | 1400 |
| PpsI | GAGTC | 2 cut(s) | 944, 1204 |
| Ppu21I | YACGTR | 1 cut(s) | 1400 |
| PscI | ACATGT | 1 cut(s) | 1240 |
| Psp6I | CCWGG | 1 cut(s) | 1495 |
| PspCI | CACGTG | 1 cut(s) | 1400 |
| PspGI | CCWGG | 1 cut(s) | 1495 |
| PspN4I | GGNNCC | 3 cut(s) | 1044, 1132, 1369 |
| PspPI | GGNCC | 2 cut(s) | 1131, 1457 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1302, 1334 |
| PstI | CTGCAG | 2 cut(s) | 1120, 1366 |
| PsuI | RGATCY | 1 cut(s) | 1042 |
| PvuII | CAGCTG | 3 cut(s) | 773, 1121, 1469 |
| RsaI | GTAC | 3 cut(s) | 789, 1189, 1453 |
| RsaNI | GTAC | 3 cut(s) | 788, 1188, 1452 |
| RseI | CAYNNNNRTG | 4 cut(s) | 372, 423, 912, 1418 |
| SaqAI | TTAA | 7 cut(s) | 65, 147, 213, 648, 660, 1089, 1485 |
| SatI | GCNGC | 3 cut(s) | 1035, 1116, 1119 |
| Sau3AI | GATC | 6 cut(s) | 73, 517, 577, 831, 1042, 1471 |
| Sau96I | GGNCC | 2 cut(s) | 1131, 1457 |
| SchI | GAGTC | 2 cut(s) | 944, 1205 |
| ScrFI | CCNGG | 1 cut(s) | 1497 |
| SduI | GDGCHC | 4 cut(s) | 55, 379, 1361, 1525 |
| SfaNI | GCATC | 4 cut(s) | 889, 950, 1330, 1413 |
| SfcI | CTRYAG | 3 cut(s) | 693, 1116, 1362 |
| SinI | GGWCC | 1 cut(s) | 1457 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 372, 423, 912, 1418 |
| SmlI | CTYRAG | 4 cut(s) | 386, 452, 676, 797 |
| SmoI | CTYRAG | 4 cut(s) | 386, 452, 676, 797 |
| SphI | GCATGC | 1 cut(s) | 1511 |
| SsiI | CCGC | 5 cut(s) | 140, 206, 755, 1032, 1165 |
| SspMI | CTAG | 3 cut(s) | 969, 1230, 1539 |
| StyD4I | CCNGG | 1 cut(s) | 1495 |
| StyI | CCWWGG | 2 cut(s) | 1322, 1538 |
| TaaI | ACNGT | 3 cut(s) | 296, 1146, 1187 |
| TaiI | ACGT | 2 cut(s) | 1068, 1402 |
| TaqI | TCGA | 2 cut(s) | 1275, 1474 |
| TatI | WGTACW | 2 cut(s) | 1187, 1451 |
| TfiI | GAWTC | 4 cut(s) | 496, 541, 1217, 1246 |
| Tru1I | TTAA | 7 cut(s) | 65, 147, 213, 648, 660, 1089, 1485 |
| Tru9I | TTAA | 7 cut(s) | 65, 147, 213, 648, 660, 1089, 1485 |
| TscAI | CASTG | 5 cut(s) | 784, 1320, 1366, 1425, 1509 |
| TseFI | GTSAC | 2 cut(s) | 712, 989 |
| TseI | GCWGC | 3 cut(s) | 1034, 1115, 1118 |
| Tsp45I | GTSAC | 2 cut(s) | 712, 989 |
| TspGWI | ACGGA | 1 cut(s) | 244 |
| TspRI | CASTG | 5 cut(s) | 784, 1320, 1366, 1425, 1509 |
| VpaK11BI | GGWCC | 1 cut(s) | 1457 |
| XapI | RAATTY | 6 cut(s) | 176, 564, 718, 822, 927, 1070 |
| XceI | RCATGY | 2 cut(s) | 1244, 1511 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1320 |
| XmaJI | CCTAGG | 1 cut(s) | 1538 |
| XmiI | GTMKAC | 1 cut(s) | 837 |
| XmnI | GAANNNNTTC | 1 cut(s) | 479 |
| XspI | CTAG | 3 cut(s) | 969, 1230, 1539 |
| Zsp2I | ATGCAT | 1 cut(s) | 1345 |