Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 511 - 616 | 2.2e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 11 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 2 cut(s) | 656, 1412 |
| AclWI | GGATC | 3 cut(s) | 863, 1736, 1749 |
| AcoI | YGGCCR | 1 cut(s) | 2010 |
| AcsI | RAATTY | 1 cut(s) | 841 |
| AcuI | CTGAAG | 1 cut(s) | 1778 |
| AcyI | GRCGYC | 2 cut(s) | 8, 1418 |
| AfaI | GTAC | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 394, 1040, 1616 |
| AflII | CTTAAG | 1 cut(s) | 731 |
| AflIII | ACRYGT | 1 cut(s) | 1182 |
| AjiI | CACGTC | 1 cut(s) | 1183 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1733, 1765 |
| Alw21I | GWGCWC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| Alw26I | GTCTC | 2 cut(s) | 47, 101 |
| Alw44I | GTGCAC | 2 cut(s) | 210, 360 |
| AlwI | GGATC | 3 cut(s) | 863, 1736, 1749 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 56, 137, 194 |
| AoxI | GGCC | 2 cut(s) | 1310, 2010 |
| ApaLI | GTGCAC | 2 cut(s) | 210, 360 |
| ApoI | RAATTY | 1 cut(s) | 841 |
| AseI | ATTAAT | 1 cut(s) | 1593 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| AspLEI | GCGC | 3 cut(s) | 383, 1609, 1946 |
| AspS9I | GGNCC | 2 cut(s) | 546, 1445 |
| AsuC2I | CCSGG | 1 cut(s) | 1034 |
| AsuHPI | GGTGA | 1 cut(s) | 521 |
| AvaII | GGWCC | 2 cut(s) | 546, 1445 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 2 cut(s) | 214, 364 |
| BamHI | GGATCC | 1 cut(s) | 1741 |
| BanII | GRGCYC | 2 cut(s) | 1383, 1842 |
| BbsI | GAAGAC | 1 cut(s) | 1710 |
| Bbv12I | GWGCWC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| BccI | CCATC | 6 cut(s) | 500, 679, 827, 1260, 1321, 1648 |
| BceAI | ACGGC | 2 cut(s) | 586, 831 |
| BciVI | GTATCC | 1 cut(s) | 391 |
| BcnI | CCSGG | 1 cut(s) | 1034 |
| BcoDI | GTCTC | 2 cut(s) | 47, 101 |
| BfaI | CTAG | 4 cut(s) | 675, 1289, 1536, 1623 |
| BfmI | CTRYAG | 3 cut(s) | 1332, 1864, 1920 |
| BfoI | RGCGCY | 1 cut(s) | 384 |
| BfrI | CTTAAG | 1 cut(s) | 731 |
| BfuI | GTATCC | 1 cut(s) | 391 |
| BglII | AGATCT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 1 cut(s) | 1034 |
| Bme18I | GGWCC | 2 cut(s) | 546, 1445 |
| BmgBI | CACGTC | 1 cut(s) | 1183 |
| BmgT120I | GGNCC | 2 cut(s) | 546, 1445 |
| BmiI | GGNNCC | 1 cut(s) | 1743 |
| BmrFI | CCNGG | 1 cut(s) | 1034 |
| BmrI | ACTGGG | 2 cut(s) | 66, 120 |
| BmsI | GCATC | 3 cut(s) | 1656, 1880, 1892 |
| BmuI | ACTGGG | 2 cut(s) | 66, 120 |
| BpiI | GAAGAC | 1 cut(s) | 1710 |
| BpmI | CTGGAG | 4 cut(s) | 150, 168, 518, 1775 |
| BpuEI | CTTGAG | 2 cut(s) | 1516, 1823 |
| BpuMI | CCSGG | 1 cut(s) | 1034 |
| Bsa29I | ATCGAT | 1 cut(s) | 591 |
| BsaBI | GATNNNNATC | 1 cut(s) | 587 |
| BsaHI | GRCGYC | 2 cut(s) | 8, 1418 |
| BsaJI | CCNNGG | 2 cut(s) | 1032, 1745 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1773, 1803 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 394, 1040, 1616 |
| Bse1I | ACTGG | 4 cut(s) | 61, 115, 167, 1792 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse8I | GATNNNNATC | 1 cut(s) | 587 |
| BseCI | ATCGAT | 1 cut(s) | 591 |
| BseDI | CCNNGG | 2 cut(s) | 1032, 1745 |
| BseGI | GGATG | 4 cut(s) | 121, 511, 1332, 1530 |
| BseJI | GATNNNNATC | 1 cut(s) | 587 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 394, 1040, 1616 |
| BseMII | CTCAG | 4 cut(s) | 96, 129, 186, 260 |
| BseNI | ACTGG | 4 cut(s) | 61, 115, 167, 1792 |
| BseRI | GAGGAG | 1 cut(s) | 740 |
| BseSI | GKGCMC | 2 cut(s) | 214, 364 |
| BsgI | GTGCAG | 1 cut(s) | 1149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 963 |
| BshFI | GGCC | 2 cut(s) | 1312, 2012 |
| BshVI | ATCGAT | 1 cut(s) | 591 |
| BsiEI | CGRYCG | 1 cut(s) | 963 |
| BsiHKAI | GWGCWC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| BsiSI | CCGG | 1 cut(s) | 1034 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 394, 1040, 1616 |
| BsmAI | GTCTC | 2 cut(s) | 47, 101 |
| BsnI | GGCC | 2 cut(s) | 1312, 2012 |
| Bsp1286I | GDGCHC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| Bsp143I | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| BspACI | CCGC | 2 cut(s) | 656, 1412 |
| BspANI | GGCC | 2 cut(s) | 1312, 2012 |
| BspCNI | CTCAG | 4 cut(s) | 97, 130, 187, 259 |
| BspDI | ATCGAT | 1 cut(s) | 591 |
| BspHI | TCATGA | 2 cut(s) | 1507, 1564 |
| BspLI | GGNNCC | 1 cut(s) | 1743 |
| BspMAI | CTGCAG | 2 cut(s) | 1336, 1924 |
| BspPI | GGATC | 3 cut(s) | 863, 1736, 1749 |
| BspTI | CTTAAG | 1 cut(s) | 731 |
| BsrI | ACTGG | 4 cut(s) | 61, 115, 167, 1792 |
| BssECI | CCNNGG | 2 cut(s) | 1032, 1745 |
| BssMI | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| BssNI | GRCGYC | 2 cut(s) | 8, 1418 |
| Bst4CI | ACNGT | 3 cut(s) | 413, 557, 685 |
| Bst6I | CTCTTC | 3 cut(s) | 19, 223, 1970 |
| BstACI | GRCGYC | 2 cut(s) | 8, 1418 |
| BstAFI | CTTAAG | 1 cut(s) | 731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1604 |
| BstC8I | GCNNGC | 3 cut(s) | 371, 567, 1314 |
| BstDEI | CTNAG | 6 cut(s) | 105, 138, 195, 246, 252, 1908 |
| BstF5I | GGATG | 4 cut(s) | 121, 511, 1332, 1530 |
| BstH2I | RGCGCY | 1 cut(s) | 384 |
| BstHHI | GCGC | 3 cut(s) | 383, 1609, 1946 |
| BstKTI | GATC | 6 cut(s) | 310, 591, 858, 1255, 1494, 1744 |
| BstMAI | GTCTC | 2 cut(s) | 47, 101 |
| BstMBI | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| BstMCI | CGRYCG | 1 cut(s) | 963 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 1556, 1604, 1613 |
| BstSCI | CCNGG | 1 cut(s) | 1032 |
| BstSFI | CTRYAG | 3 cut(s) | 1332, 1864, 1920 |
| BstSLI | GKGCMC | 2 cut(s) | 214, 364 |
| BstV2I | GAAGAC | 1 cut(s) | 1710 |
| BstX2I | RGATCY | 2 cut(s) | 307, 1741 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1266 |
| BstYI | RGATCY | 2 cut(s) | 307, 1741 |
| Bsu15I | ATCGAT | 1 cut(s) | 591 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 391 |
| BsuRI | GGCC | 2 cut(s) | 1312, 2012 |
| BsuTUI | ATCGAT | 1 cut(s) | 591 |
| BtrI | CACGTC | 1 cut(s) | 1183 |
| BtsCI | GGATG | 4 cut(s) | 121, 511, 1332, 1530 |
| BtsI | GCAGTG | 2 cut(s) | 1545, 1917 |
| BtsIMutI | CAGTG | 3 cut(s) | 1230, 1545, 1917 |
| Cac8I | GCNNGC | 3 cut(s) | 371, 567, 1314 |
| CaiI | CAGNNNCTG | 3 cut(s) | 56, 137, 194 |
| CciI | TCATGA | 2 cut(s) | 1507, 1564 |
| CfoI | GCGC | 3 cut(s) | 383, 1609, 1946 |
| Cfr13I | GGNCC | 2 cut(s) | 546, 1445 |
| ClaI | ATCGAT | 1 cut(s) | 591 |
| CseI | GACGC | 2 cut(s) | 1426, 1947 |
| Csp6I | GTAC | 1 cut(s) | 98 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 966, 1001 |
| CviAII | CATG | 8 cut(s) | 350, 611, 1020, 1058, 1198, 1508, 1565, 1708 |
| CviQI | GTAC | 1 cut(s) | 98 |
| DdeI | CTNAG | 6 cut(s) | 105, 138, 195, 246, 252, 1908 |
| DpnI | GATC | 6 cut(s) | 309, 590, 857, 1254, 1493, 1743 |
| DpnII | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| EaeI | YGGCCR | 1 cut(s) | 2010 |
| Eam1104I | CTCTTC | 3 cut(s) | 19, 223, 1970 |
| EarI | CTCTTC | 3 cut(s) | 19, 223, 1970 |
| Ecl136II | GAGCTC | 2 cut(s) | 1381, 1840 |
| Eco24I | GRGCYC | 2 cut(s) | 1383, 1842 |
| Eco47I | GGWCC | 2 cut(s) | 546, 1445 |
| Eco53kI | GAGCTC | 2 cut(s) | 1381, 1840 |
| Eco57I | CTGAAG | 1 cut(s) | 1778 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 2 cut(s) | 1381, 1840 |
| EcoT22I | ATGCAT | 1 cut(s) | 1885 |
| EcoT38I | GRGCYC | 2 cut(s) | 1383, 1842 |
| FaeI | CATG | 8 cut(s) | 353, 614, 1023, 1061, 1201, 1511, 1568, 1711 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 385, 417, 714, 746, 1811, 1843, 1826, 1858 |
| FatI | CATG | 8 cut(s) | 349, 610, 1019, 1057, 1197, 1507, 1564, 1707 |
| FauI | CCCGC | 1 cut(s) | 663 |
| FauNDI | CATATG | 2 cut(s) | 22, 274 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| FokI | GGATG | 4 cut(s) | 128, 518, 1339, 1537 |
| FriOI | GRGCYC | 2 cut(s) | 1383, 1842 |
| FspBI | CTAG | 4 cut(s) | 675, 1289, 1536, 1623 |
| GlaI | GCGC | 3 cut(s) | 382, 1608, 1945 |
| GsuI | CTGGAG | 4 cut(s) | 150, 168, 518, 1775 |
| HaeII | RGCGCY | 1 cut(s) | 384 |
| HaeIII | GGCC | 2 cut(s) | 1312, 2012 |
| HapII | CCGG | 1 cut(s) | 1034 |
| HgaI | GACGC | 2 cut(s) | 1426, 1947 |
| HhaI | GCGC | 3 cut(s) | 383, 1609, 1946 |
| Hin1I | GRCGYC | 2 cut(s) | 8, 1418 |
| Hin1II | CATG | 8 cut(s) | 353, 614, 1023, 1061, 1201, 1511, 1568, 1711 |
| Hin6I | GCGC | 3 cut(s) | 381, 1607, 1944 |
| HinP1I | GCGC | 3 cut(s) | 381, 1607, 1944 |
| HincII | GTYRAC | 3 cut(s) | 6, 813, 951 |
| HindII | GTYRAC | 3 cut(s) | 6, 813, 951 |
| HinfI | GANTC | 5 cut(s) | 47, 787, 874, 914, 1711 |
| HpaII | CCGG | 1 cut(s) | 1034 |
| HphI | GGTGA | 1 cut(s) | 521 |
| Hpy166II | GTNNAC | 6 cut(s) | 6, 212, 362, 546, 813, 951 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 52, 441, 753, 792 |
| Hpy188III | TCNNGA | 5 cut(s) | 535, 1081, 1495, 1508, 1565 |
| Hpy8I | GTNNAC | 6 cut(s) | 6, 212, 362, 546, 813, 951 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 8 cut(s) | 617, 730, 937, 1064, 1090, 1198, 1211, 1577 |
| HpyCH4III | ACNGT | 3 cut(s) | 413, 557, 685 |
| HpyCH4IV | ACGT | 3 cut(s) | 8, 1182, 1696 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 1556, 1604, 1613 |
| HpyF3I | CTNAG | 6 cut(s) | 105, 138, 195, 246, 252, 1908 |
| HpySE526I | ACGT | 3 cut(s) | 8, 1182, 1696 |
| Hsp92I | GRCGYC | 2 cut(s) | 8, 1418 |
| Hsp92II | CATG | 8 cut(s) | 353, 614, 1023, 1061, 1201, 1511, 1568, 1711 |
| HspAI | GCGC | 3 cut(s) | 381, 1607, 1944 |
| Kzo9I | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| LmnI | GCTCC | 6 cut(s) | 169, 187, 283, 727, 1794, 1837 |
| LweI | GCATC | 3 cut(s) | 1656, 1880, 1892 |
| MaeI | CTAG | 4 cut(s) | 675, 1289, 1536, 1623 |
| MaeII | ACGT | 3 cut(s) | 8, 1182, 1696 |
| MaeIII | GTNAC | 2 cut(s) | 62, 1513 |
| MalI | GATC | 6 cut(s) | 309, 590, 857, 1254, 1493, 1743 |
| MboI | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| MflI | RGATCY | 2 cut(s) | 307, 1741 |
| MhlI | GDGCHC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| MluCI | AATT | 8 cut(s) | 40, 90, 659, 841, 1134, 1211, 1270, 1637 |
| MmeI | TCCRAC | 5 cut(s) | 266, 818, 911, 1283, 1423 |
| Mph1103I | ATGCAT | 1 cut(s) | 1885 |
| MroXI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| MseI | TTAA | 9 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593, 1853 |
| MslI | CAYNNNNRTG | 3 cut(s) | 277, 1056, 1091 |
| MspA1I | CMGCKG | 2 cut(s) | 104, 1414 |
| MspCI | CTTAAG | 1 cut(s) | 731 |
| MspI | CCGG | 1 cut(s) | 1034 |
| MspR9I | CCNGG | 1 cut(s) | 1034 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 134, 188, 1556, 1604, 1613 |
| NciI | CCSGG | 1 cut(s) | 1034 |
| NdeI | CATATG | 2 cut(s) | 22, 274 |
| NdeII | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| NlaIII | CATG | 8 cut(s) | 353, 614, 1023, 1061, 1201, 1511, 1568, 1711 |
| NlaIV | GGNNCC | 1 cut(s) | 1743 |
| NmuCI | GTSAC | 1 cut(s) | 1513 |
| NsiI | ATGCAT | 1 cut(s) | 1885 |
| PagI | TCATGA | 2 cut(s) | 1507, 1564 |
| PdmI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| PfeI | GAWTC | 5 cut(s) | 47, 787, 874, 914, 1711 |
| PshBI | ATTAAT | 1 cut(s) | 1593 |
| Psp124BI | GAGCTC | 2 cut(s) | 1383, 1842 |
| PspN4I | GGNNCC | 1 cut(s) | 1743 |
| PspPI | GGNCC | 2 cut(s) | 546, 1445 |
| PstI | CTGCAG | 2 cut(s) | 1336, 1924 |
| PstNI | CAGNNNCTG | 3 cut(s) | 56, 137, 194 |
| PsuI | RGATCY | 2 cut(s) | 307, 1741 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| RsaI | GTAC | 1 cut(s) | 99 |
| RsaNI | GTAC | 1 cut(s) | 98 |
| RseI | CAYNNNNRTG | 3 cut(s) | 277, 1056, 1091 |
| SacI | GAGCTC | 2 cut(s) | 1383, 1842 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 9 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593, 1853 |
| Sau3AI | GATC | 6 cut(s) | 307, 588, 855, 1252, 1491, 1741 |
| Sau96I | GGNCC | 2 cut(s) | 546, 1445 |
| ScrFI | CCNGG | 1 cut(s) | 1034 |
| SduI | GDGCHC | 7 cut(s) | 214, 288, 364, 422, 1383, 1791, 1842 |
| SfaNI | GCATC | 3 cut(s) | 1656, 1880, 1892 |
| SfcI | CTRYAG | 3 cut(s) | 1332, 1864, 1920 |
| SinI | GGWCC | 2 cut(s) | 546, 1445 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 277, 1056, 1091 |
| SmlI | CTYRAG | 3 cut(s) | 731, 1495, 1802 |
| SmoI | CTYRAG | 3 cut(s) | 731, 1495, 1802 |
| Sse9I | AATT | 8 cut(s) | 40, 90, 659, 841, 1134, 1211, 1270, 1637 |
| SsiI | CCGC | 2 cut(s) | 656, 1412 |
| SspI | AATATT | 2 cut(s) | 1482, 1688 |
| SspMI | CTAG | 4 cut(s) | 675, 1289, 1536, 1623 |
| SstI | GAGCTC | 2 cut(s) | 1383, 1842 |
| StyD4I | CCNGG | 1 cut(s) | 1032 |
| TaaI | ACNGT | 3 cut(s) | 413, 557, 685 |
| TaiI | ACGT | 3 cut(s) | 11, 1185, 1699 |
| TaqI | TCGA | 6 cut(s) | 5, 591, 785, 963, 1383, 1973 |
| TaqII | GACCGA | 1 cut(s) | 949 |
| TasI | AATT | 8 cut(s) | 40, 90, 659, 841, 1134, 1211, 1270, 1637 |
| TfiI | GAWTC | 5 cut(s) | 47, 787, 874, 914, 1711 |
| Tru1I | TTAA | 9 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593, 1853 |
| Tru9I | TTAA | 9 cut(s) | 93, 408, 732, 743, 764, 1112, 1283, 1593, 1853 |
| TscAI | CASTG | 3 cut(s) | 1237, 1552, 1924 |
| TseFI | GTSAC | 1 cut(s) | 1513 |
| Tsp45I | GTSAC | 1 cut(s) | 1513 |
| TspDTI | ATGAA | 9 cut(s) | 6, 261, 636, 1046, 1358, 1383, 1496, 1553, 1724 |
| TspGWI | ACGGA | 1 cut(s) | 498 |
| TspRI | CASTG | 3 cut(s) | 1237, 1552, 1924 |
| Vha464I | CTTAAG | 1 cut(s) | 731 |
| VneI | GTGCAC | 2 cut(s) | 210, 360 |
| VpaK11BI | GGWCC | 2 cut(s) | 546, 1445 |
| VspI | ATTAAT | 1 cut(s) | 1593 |
| XapI | RAATTY | 1 cut(s) | 841 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 2 cut(s) | 232, 1165 |
| XspI | CTAG | 4 cut(s) | 675, 1289, 1536, 1623 |
| ZraI | GACGTC | 1 cut(s) | 9 |
| Zsp2I | ATGCAT | 1 cut(s) | 1885 |