Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 406 - 504 | 1.4e-28 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 917 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 674, 1044 |
| AciI | CCGC | 2 cut(s) | 45, 1514 |
| AclWI | GGATC | 4 cut(s) | 180, 1369, 1394, 1407 |
| AcsI | RAATTY | 7 cut(s) | 320, 540, 836, 871, 1178, 1240, 1418 |
| AcuI | CTGAAG | 2 cut(s) | 494, 1596 |
| AdeI | CACNNNGTG | 1 cut(s) | 1044 |
| AfaI | GTAC | 5 cut(s) | 398, 924, 941, 990, 1409 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 674, 1044 |
| AflII | CTTAAG | 1 cut(s) | 440 |
| AflIII | ACRYGT | 1 cut(s) | 308 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1213, 1245 |
| AluBI | AGCT | 7 cut(s) | 53, 209, 413, 484, 689, 1371, 1444 |
| AluI | AGCT | 7 cut(s) | 53, 209, 413, 484, 689, 1371, 1444 |
| Alw21I | GWGCWC | 1 cut(s) | 862 |
| Alw26I | GTCTC | 4 cut(s) | 14, 1018, 1288, 1309 |
| AlwI | GGATC | 4 cut(s) | 180, 1369, 1394, 1407 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 517 |
| AoxI | GGCC | 2 cut(s) | 357, 1431 |
| ApoI | RAATTY | 7 cut(s) | 320, 540, 836, 871, 1178, 1240, 1418 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1475 |
| AspS9I | GGNCC | 1 cut(s) | 1431 |
| AsuHPI | GGTGA | 2 cut(s) | 285, 1592 |
| BaeGI | GKGCMC | 1 cut(s) | 1038 |
| BamHI | GGATCC | 1 cut(s) | 1399 |
| BbsI | GAAGAC | 3 cut(s) | 91, 294, 1590 |
| Bbv12I | GWGCWC | 1 cut(s) | 862 |
| BccI | CCATC | 5 cut(s) | 575, 881, 1147, 1298, 1390 |
| BciVI | GTATCC | 2 cut(s) | 633, 1239 |
| BclI | TGATCA | 1 cut(s) | 904 |
| BcoDI | GTCTC | 4 cut(s) | 14, 1018, 1288, 1309 |
| BfaI | CTAG | 3 cut(s) | 96, 686, 1041 |
| BfmI | CTRYAG | 1 cut(s) | 1435 |
| BfrI | CTTAAG | 1 cut(s) | 440 |
| BfuI | GTATCC | 2 cut(s) | 633, 1239 |
| BmgT120I | GGNCC | 1 cut(s) | 1431 |
| BmiI | GGNNCC | 2 cut(s) | 1222, 1401 |
| BmsI | GCATC | 2 cut(s) | 770, 942 |
| BpiI | GAAGAC | 3 cut(s) | 91, 294, 1590 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1552, 1584 |
| BpuEI | CTTGAG | 2 cut(s) | 555, 1042 |
| BsaAI | YACGTR | 1 cut(s) | 926 |
| BsaBI | GATNNNNATC | 1 cut(s) | 895 |
| BsaJI | CCNNGG | 3 cut(s) | 1254, 1378, 1403 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 39, 69, 529, 559, 1508, 1538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 674, 1044 |
| Bse1I | ACTGG | 1 cut(s) | 107 |
| Bse8I | GATNNNNATC | 1 cut(s) | 895 |
| BseDI | CCNNGG | 3 cut(s) | 1254, 1378, 1403 |
| BseJI | GATNNNNATC | 1 cut(s) | 895 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 674, 1044 |
| BseMII | CTCAG | 3 cut(s) | 159, 311, 1452 |
| BseNI | ACTGG | 1 cut(s) | 107 |
| BseSI | GKGCMC | 1 cut(s) | 1038 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| BshFI | GGCC | 2 cut(s) | 359, 1433 |
| BsiHKAI | GWGCWC | 1 cut(s) | 862 |
| BslFI | GGGAC | 1 cut(s) | 1169 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 674, 1044 |
| BsmAI | GTCTC | 4 cut(s) | 14, 1018, 1288, 1309 |
| BsmBI | CGTCTC | 1 cut(s) | 1309 |
| BsmFI | GGGAC | 1 cut(s) | 1169 |
| BsmI | GAATGC | 2 cut(s) | 197, 1278 |
| BsnI | GGCC | 2 cut(s) | 359, 1433 |
| Bsp1286I | GDGCHC | 2 cut(s) | 862, 1038 |
| Bsp1407I | TGTACA | 1 cut(s) | 988 |
| Bsp143I | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| BspACI | CCGC | 2 cut(s) | 45, 1514 |
| BspANI | GGCC | 2 cut(s) | 359, 1433 |
| BspCNI | CTCAG | 3 cut(s) | 160, 310, 1453 |
| BspHI | TCATGA | 3 cut(s) | 259, 1311, 1551 |
| BspLI | GGNNCC | 2 cut(s) | 1222, 1401 |
| BspPI | GGATC | 4 cut(s) | 180, 1369, 1394, 1407 |
| BspTI | CTTAAG | 1 cut(s) | 440 |
| BsrGI | TGTACA | 1 cut(s) | 988 |
| BsrI | ACTGG | 1 cut(s) | 107 |
| BssECI | CCNNGG | 3 cut(s) | 1254, 1378, 1403 |
| BssMI | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| BssT1I | CCWWGG | 2 cut(s) | 1254, 1378 |
| Bst4CI | ACNGT | 1 cut(s) | 463 |
| Bst6I | CTCTTC | 1 cut(s) | 1009 |
| BstAFI | CTTAAG | 1 cut(s) | 440 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 376 |
| BstAUI | TGTACA | 1 cut(s) | 988 |
| BstBAI | YACGTR | 1 cut(s) | 926 |
| BstC8I | GCNNGC | 2 cut(s) | 186, 1442 |
| BstDEI | CTNAG | 4 cut(s) | 168, 297, 644, 1461 |
| BstKTI | GATC | 5 cut(s) | 175, 699, 907, 1377, 1402 |
| BstMAI | GTCTC | 4 cut(s) | 14, 1018, 1288, 1309 |
| BstMBI | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 376, 1471 |
| BstSFI | CTRYAG | 1 cut(s) | 1435 |
| BstSLI | GKGCMC | 1 cut(s) | 1038 |
| BstV2I | GAAGAC | 3 cut(s) | 91, 294, 1590 |
| BstX2I | RGATCY | 1 cut(s) | 1399 |
| BstYI | RGATCY | 1 cut(s) | 1399 |
| BsuI | GTATCC | 2 cut(s) | 633, 1239 |
| BsuRI | GGCC | 2 cut(s) | 359, 1433 |
| BtsIMutI | CAGTG | 1 cut(s) | 1479 |
| Cac8I | GCNNGC | 2 cut(s) | 186, 1442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 517 |
| CciI | TCATGA | 3 cut(s) | 259, 1311, 1551 |
| Cfr13I | GGNCC | 1 cut(s) | 1431 |
| Csp6I | GTAC | 5 cut(s) | 397, 923, 940, 989, 1408 |
| CviAII | CATG | 8 cut(s) | 71, 260, 371, 473, 845, 1291, 1312, 1552 |
| CviQI | GTAC | 5 cut(s) | 397, 923, 940, 989, 1408 |
| DdeI | CTNAG | 4 cut(s) | 168, 297, 644, 1461 |
| DpnI | GATC | 5 cut(s) | 174, 698, 906, 1376, 1401 |
| DpnII | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| DraI | TTTAAA | 1 cut(s) | 151 |
| DraIII | CACNNNGTG | 1 cut(s) | 1044 |
| Eam1104I | CTCTTC | 1 cut(s) | 1009 |
| EarI | CTCTTC | 1 cut(s) | 1009 |
| Eco130I | CCWWGG | 2 cut(s) | 1254, 1378 |
| Eco32I | GATATC | 1 cut(s) | 144 |
| Eco57I | CTGAAG | 2 cut(s) | 494, 1596 |
| EcoRV | GATATC | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 2 cut(s) | 1254, 1378 |
| EcoT22I | ATGCAT | 2 cut(s) | 197, 763 |
| ErhI | CCWWGG | 2 cut(s) | 1254, 1378 |
| Esp3I | CGTCTC | 1 cut(s) | 1309 |
| FaeI | CATG | 8 cut(s) | 74, 263, 374, 476, 848, 1294, 1315, 1555 |
| FaqI | GGGAC | 1 cut(s) | 1169 |
| FatI | CATG | 8 cut(s) | 70, 259, 370, 472, 844, 1290, 1311, 1551 |
| FauNDI | CATATG | 1 cut(s) | 657 |
| FbaI | TGATCA | 1 cut(s) | 904 |
| FspBI | CTAG | 3 cut(s) | 96, 686, 1041 |
| HaeIII | GGCC | 2 cut(s) | 359, 1433 |
| Hin1II | CATG | 8 cut(s) | 74, 263, 374, 476, 848, 1294, 1315, 1555 |
| HinfI | GANTC | 5 cut(s) | 224, 405, 514, 614, 773 |
| HphI | GGTGA | 2 cut(s) | 285, 1592 |
| Hpy166II | GTNNAC | 3 cut(s) | 68, 1456, 1603 |
| Hpy188I | TCNGA | 7 cut(s) | 343, 410, 513, 556, 619, 1363, 1462 |
| Hpy188III | TCNNGA | 8 cut(s) | 260, 868, 884, 1145, 1218, 1312, 1532, 1552 |
| Hpy8I | GTNNAC | 3 cut(s) | 68, 1456, 1603 |
| Hpy99I | CGWCG | 1 cut(s) | 1092 |
| HpyAV | CCTTC | 2 cut(s) | 444, 1571 |
| HpyCH4III | ACNGT | 1 cut(s) | 463 |
| HpyCH4IV | ACGT | 3 cut(s) | 253, 310, 925 |
| HpyCH4V | TGCA | 9 cut(s) | 188, 195, 631, 761, 933, 1076, 1094, 1109, 1388 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 376, 1471 |
| HpyF3I | CTNAG | 4 cut(s) | 168, 297, 644, 1461 |
| HpySE526I | ACGT | 3 cut(s) | 253, 310, 925 |
| Hsp92II | CATG | 8 cut(s) | 74, 263, 374, 476, 848, 1294, 1315, 1555 |
| Ksp22I | TGATCA | 1 cut(s) | 904 |
| Kzo9I | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| LmnI | GCTCC | 1 cut(s) | 206 |
| LpnPI | CCDG | 6 cut(s) | 120, 174, 225, 1158, 1203, 1283 |
| LweI | GCATC | 2 cut(s) | 770, 942 |
| MaeI | CTAG | 3 cut(s) | 96, 686, 1041 |
| MaeII | ACGT | 3 cut(s) | 253, 310, 925 |
| MaeIII | GTNAC | 4 cut(s) | 163, 291, 1115, 1201 |
| MalI | GATC | 5 cut(s) | 174, 698, 906, 1376, 1401 |
| MboI | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| MboII | GAAGA | 7 cut(s) | 50, 96, 294, 306, 1026, 1180, 1595 |
| MfeI | CAATTG | 3 cut(s) | 800, 900, 1389 |
| MflI | RGATCY | 1 cut(s) | 1399 |
| MhlI | GDGCHC | 2 cut(s) | 862, 1038 |
| MmeI | TCCRAC | 2 cut(s) | 119, 1341 |
| Mph1103I | ATGCAT | 2 cut(s) | 197, 763 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1475 |
| MslI | CAYNNNNRTG | 2 cut(s) | 709, 1302 |
| MspCI | CTTAAG | 1 cut(s) | 440 |
| MunI | CAATTG | 3 cut(s) | 800, 900, 1389 |
| Mva1269I | GAATGC | 2 cut(s) | 197, 1278 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 376, 1471 |
| NdeI | CATATG | 1 cut(s) | 657 |
| NdeII | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| NlaIII | CATG | 8 cut(s) | 74, 263, 374, 476, 848, 1294, 1315, 1555 |
| NlaIV | GGNNCC | 2 cut(s) | 1222, 1401 |
| NmuCI | GTSAC | 3 cut(s) | 291, 1115, 1201 |
| NsiI | ATGCAT | 2 cut(s) | 197, 763 |
| PagI | TCATGA | 3 cut(s) | 259, 1311, 1551 |
| PctI | GAATGC | 2 cut(s) | 197, 1278 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1475 |
| PfeI | GAWTC | 5 cut(s) | 224, 405, 514, 614, 773 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 674, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 926 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| PsiI | TTATAA | 1 cut(s) | 917 |
| PspN4I | GGNNCC | 2 cut(s) | 1222, 1401 |
| PspPI | GGNCC | 1 cut(s) | 1431 |
| PstNI | CAGNNNCTG | 1 cut(s) | 517 |
| PsuI | RGATCY | 1 cut(s) | 1399 |
| RsaI | GTAC | 5 cut(s) | 398, 924, 941, 990, 1409 |
| RsaNI | GTAC | 5 cut(s) | 397, 923, 940, 989, 1408 |
| RseI | CAYNNNNRTG | 2 cut(s) | 709, 1302 |
| Sau3AI | GATC | 5 cut(s) | 172, 696, 904, 1374, 1399 |
| Sau96I | GGNCC | 1 cut(s) | 1431 |
| SduI | GDGCHC | 2 cut(s) | 862, 1038 |
| SfaNI | GCATC | 2 cut(s) | 770, 942 |
| SfcI | CTRYAG | 1 cut(s) | 1435 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 709, 1302 |
| SmlI | CTYRAG | 3 cut(s) | 440, 570, 1021 |
| SmoI | CTYRAG | 3 cut(s) | 440, 570, 1021 |
| SsiI | CCGC | 2 cut(s) | 45, 1514 |
| SspI | AATATT | 1 cut(s) | 1355 |
| SspMI | CTAG | 3 cut(s) | 96, 686, 1041 |
| StyI | CCWWGG | 2 cut(s) | 1254, 1378 |
| TaaI | ACNGT | 1 cut(s) | 463 |
| TaiI | ACGT | 3 cut(s) | 256, 313, 928 |
| TaqI | TCGA | 5 cut(s) | 278, 354, 743, 850, 1068 |
| TatI | WGTACW | 2 cut(s) | 939, 988 |
| TfiI | GAWTC | 5 cut(s) | 224, 405, 514, 614, 773 |
| TscAI | CASTG | 1 cut(s) | 1486 |
| TseFI | GTSAC | 3 cut(s) | 291, 1115, 1201 |
| Tsp45I | GTSAC | 3 cut(s) | 291, 1115, 1201 |
| TspRI | CASTG | 1 cut(s) | 1486 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 674, 1044 |
| Vha464I | CTTAAG | 1 cut(s) | 440 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XapI | RAATTY | 7 cut(s) | 320, 540, 836, 871, 1178, 1240, 1418 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1475 |
| XspI | CTAG | 3 cut(s) | 96, 686, 1041 |
| Zsp2I | ATGCAT | 2 cut(s) | 197, 763 |