Zinc finger BED domain-containing protein RICESLEEPER
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 426 |
| AccB1I | GGYRCC | 1 cut(s) | 426 |
| AccIII | TCCGGA | 1 cut(s) | 52 |
| AcsI | RAATTY | 1 cut(s) | 266 |
| AcuI | CTGAAG | 1 cut(s) | 102 |
| AfaI | GTAC | 3 cut(s) | 344, 385, 428 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AflII | CTTAAG | 1 cut(s) | 395 |
| AgsI | TTSAA | 2 cut(s) | 42, 335 |
| AhlI | ACTAGT | 1 cut(s) | 386 |
| AjnI | CCWGG | 2 cut(s) | 97, 430 |
| AluBI | AGCT | 2 cut(s) | 89, 412 |
| AluI | AGCT | 2 cut(s) | 89, 412 |
| Alw21I | GWGCWC | 1 cut(s) | 258 |
| Alw26I | GTCTC | 1 cut(s) | 299 |
| Aor13HI | TCCGGA | 1 cut(s) | 52 |
| ApeKI | GCWGC | 2 cut(s) | 77, 86 |
| ApoI | RAATTY | 1 cut(s) | 266 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 148, 180 |
| Asp718I | GGTACC | 1 cut(s) | 426 |
| AsuHPI | GGTGA | 2 cut(s) | 131, 253 |
| AsuII | TTCGAA | 1 cut(s) | 167 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 418, 451 |
| BanI | GGYRCC | 1 cut(s) | 426 |
| Bbv12I | GWGCWC | 1 cut(s) | 258 |
| BbvI | GCAGC | 2 cut(s) | 64, 98 |
| BccI | CCATC | 1 cut(s) | 136 |
| BceAI | ACGGC | 2 cut(s) | 159, 168 |
| BciT130I | CCWGG | 2 cut(s) | 99, 432 |
| BcoDI | GTCTC | 1 cut(s) | 299 |
| BcuI | ACTAGT | 1 cut(s) | 386 |
| BfaI | CTAG | 5 cut(s) | 33, 372, 387, 413, 446 |
| BfrI | CTTAAG | 1 cut(s) | 395 |
| BisI | GCNGC | 2 cut(s) | 78, 87 |
| BlsI | GCNGC | 2 cut(s) | 79, 88 |
| BmcAI | AGTACT | 1 cut(s) | 344 |
| Bme1390I | CCNGG | 2 cut(s) | 99, 432 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmrFI | CCNGG | 2 cut(s) | 99, 432 |
| BmrI | ACTGGG | 1 cut(s) | 129 |
| BmuI | ACTGGG | 1 cut(s) | 129 |
| BpmI | CTGGAG | 1 cut(s) | 120 |
| Bpu14I | TTCGAA | 1 cut(s) | 167 |
| BsaJI | CCNNGG | 1 cut(s) | 430 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 34, 64 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bse118I | RCCGGY | 1 cut(s) | 59 |
| Bse1I | ACTGG | 2 cut(s) | 121, 135 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseAI | TCCGGA | 1 cut(s) | 52 |
| BseBI | CCWGG | 2 cut(s) | 99, 432 |
| BseDI | CCNNGG | 1 cut(s) | 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseNI | ACTGG | 2 cut(s) | 121, 135 |
| BseXI | GCAGC | 2 cut(s) | 64, 98 |
| BshNI | GGYRCC | 1 cut(s) | 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 258 |
| BsiSI | CCGG | 2 cut(s) | 53, 60 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BsmAI | GTCTC | 1 cut(s) | 299 |
| Bsp119I | TTCGAA | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 258 |
| Bsp13I | TCCGGA | 1 cut(s) | 52 |
| BspEI | TCCGGA | 1 cut(s) | 52 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspT104I | TTCGAA | 1 cut(s) | 167 |
| BspT107I | GGYRCC | 1 cut(s) | 426 |
| BspTI | CTTAAG | 1 cut(s) | 395 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrFI | RCCGGY | 1 cut(s) | 59 |
| BsrI | ACTGG | 2 cut(s) | 121, 135 |
| BssAI | RCCGGY | 1 cut(s) | 59 |
| BssECI | CCNNGG | 1 cut(s) | 430 |
| Bst2UI | CCWGG | 2 cut(s) | 99, 432 |
| Bst4CI | ACNGT | 1 cut(s) | 310 |
| Bst6I | CTCTTC | 2 cut(s) | 200, 444 |
| BstAFI | CTTAAG | 1 cut(s) | 395 |
| BstBI | TTCGAA | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 1 cut(s) | 61 |
| BstMAI | GTCTC | 1 cut(s) | 299 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 83, 86, 152, 400, 409 |
| BstNI | CCWGG | 2 cut(s) | 99, 432 |
| BstSCI | CCNGG | 2 cut(s) | 97, 430 |
| BstV1I | GCAGC | 2 cut(s) | 64, 98 |
| BtsI | GCAGTG | 1 cut(s) | 205 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 205 |
| Cac8I | GCNNGC | 1 cut(s) | 61 |
| Cfr10I | RCCGGY | 1 cut(s) | 59 |
| Csp6I | GTAC | 3 cut(s) | 343, 384, 427 |
| CviJI | RGCY | 6 cut(s) | 59, 77, 89, 277, 362, 412 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 77, 89, 277, 362, 412 |
| CviQI | GTAC | 3 cut(s) | 343, 384, 427 |
| Eam1104I | CTCTTC | 2 cut(s) | 200, 444 |
| EarI | CTCTTC | 2 cut(s) | 200, 444 |
| Eco57I | CTGAAG | 1 cut(s) | 102 |
| EcoRII | CCWGG | 2 cut(s) | 97, 430 |
| FaiI | YATR | 3 cut(s) | 174, 405, 407 |
| FauNDI | CATATG | 1 cut(s) | 405 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 87 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 87 |
| FspBI | CTAG | 5 cut(s) | 33, 372, 387, 413, 446 |
| GluI | GCNGC | 2 cut(s) | 78, 87 |
| GsuI | CTGGAG | 1 cut(s) | 120 |
| HapII | CCGG | 2 cut(s) | 53, 60 |
| HinfI | GANTC | 3 cut(s) | 5, 157, 368 |
| HpaII | CCGG | 2 cut(s) | 53, 60 |
| HphI | GGTGA | 2 cut(s) | 131, 253 |
| Hpy188I | TCNGA | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 1 cut(s) | 53 |
| Hpy99I | CGWCG | 3 cut(s) | 145, 151, 154 |
| HpyAV | CCTTC | 2 cut(s) | 181, 223 |
| HpyCH4III | ACNGT | 1 cut(s) | 310 |
| HpyCH4V | TGCA | 1 cut(s) | 420 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 83, 86, 152, 400, 409 |
| Kpn2I | TCCGGA | 1 cut(s) | 52 |
| KpnI | GGTACC | 1 cut(s) | 430 |
| KroI | GCCGGC | 1 cut(s) | 59 |
| KroNI | GCCGGC | 1 cut(s) | 61 |
| LmnI | GCTCC | 2 cut(s) | 253, 409 |
| LpnPI | CCDG | 9 cut(s) | 66, 73, 84, 102, 111, 148, 287, 417, 444 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 98 |
| MaeI | CTAG | 5 cut(s) | 33, 372, 387, 413, 446 |
| MboII | GAAGA | 6 cut(s) | 156, 193, 196, 217, 232, 235 |
| MhlI | GDGCHC | 1 cut(s) | 258 |
| MluCI | AATT | 3 cut(s) | 10, 28, 266 |
| MlyI | GAGTC | 1 cut(s) | 151 |
| MmeI | TCCRAC | 1 cut(s) | 164 |
| MnlI | CCTC | 3 cut(s) | 207, 231, 289 |
| MroI | TCCGGA | 1 cut(s) | 52 |
| MroNI | GCCGGC | 1 cut(s) | 59 |
| MseI | TTAA | 2 cut(s) | 396, 457 |
| MspA1I | CMGCKG | 1 cut(s) | 89 |
| MspCI | CTTAAG | 1 cut(s) | 395 |
| MspI | CCGG | 2 cut(s) | 53, 60 |
| MspR9I | CCNGG | 2 cut(s) | 99, 432 |
| MvaI | CCWGG | 2 cut(s) | 99, 432 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 83, 86, 152, 400, 409 |
| NaeI | GCCGGC | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 405 |
| NgoMIV | GCCGGC | 1 cut(s) | 59 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NspV | TTCGAA | 1 cut(s) | 167 |
| PdiI | GCCGGC | 1 cut(s) | 61 |
| PfeI | GAWTC | 2 cut(s) | 5, 368 |
| PkrI | GCNGC | 2 cut(s) | 79, 88 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| Psp6I | CCWGG | 2 cut(s) | 97, 430 |
| PspGI | CCWGG | 2 cut(s) | 97, 430 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PvuII | CAGCTG | 1 cut(s) | 89 |
| RsaI | GTAC | 3 cut(s) | 344, 385, 428 |
| RsaNI | GTAC | 3 cut(s) | 343, 384, 427 |
| SaqAI | TTAA | 2 cut(s) | 396, 457 |
| SatI | GCNGC | 2 cut(s) | 78, 87 |
| ScaI | AGTACT | 1 cut(s) | 344 |
| SchI | GAGTC | 1 cut(s) | 151 |
| ScrFI | CCNGG | 2 cut(s) | 99, 432 |
| SduI | GDGCHC | 1 cut(s) | 258 |
| SetI | ASST | 6 cut(s) | 91, 100, 192, 242, 414, 447 |
| SfuI | TTCGAA | 1 cut(s) | 167 |
| SmlI | CTYRAG | 1 cut(s) | 395 |
| SmoI | CTYRAG | 1 cut(s) | 395 |
| SpeI | ACTAGT | 1 cut(s) | 386 |
| Sse9I | AATT | 3 cut(s) | 10, 28, 266 |
| SspMI | CTAG | 5 cut(s) | 33, 372, 387, 413, 446 |
| StyD4I | CCNGG | 2 cut(s) | 97, 430 |
| TaaI | ACNGT | 1 cut(s) | 310 |
| TaqI | TCGA | 2 cut(s) | 167, 270 |
| TasI | AATT | 3 cut(s) | 10, 28, 266 |
| TatI | WGTACW | 1 cut(s) | 342 |
| TfiI | GAWTC | 2 cut(s) | 5, 368 |
| Tru1I | TTAA | 2 cut(s) | 396, 457 |
| Tru9I | TTAA | 2 cut(s) | 396, 457 |
| TscAI | CASTG | 2 cut(s) | 121, 205 |
| TseI | GCWGC | 2 cut(s) | 77, 86 |
| TspDTI | ATGAA | 3 cut(s) | 8, 123, 242 |
| TspRI | CASTG | 2 cut(s) | 121, 205 |
| Vha464I | CTTAAG | 1 cut(s) | 395 |
| XapI | RAATTY | 1 cut(s) | 266 |
| XspI | CTAG | 5 cut(s) | 33, 372, 387, 413, 446 |
| ZrmI | AGTACT | 1 cut(s) | 344 |