Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 223 - 302 | 7.6e-20 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 200 |
| AbsI | CCTCGAGG | 1 cut(s) | 231 |
| AccB1I | GGYRCC | 1 cut(s) | 324 |
| AciI | CCGC | 2 cut(s) | 164, 322 |
| AclWI | GGATC | 2 cut(s) | 788, 801 |
| AcuI | CTGAAG | 1 cut(s) | 566 |
| AcyI | GRCGYC | 1 cut(s) | 197 |
| AfaI | GTAC | 4 cut(s) | 5, 249, 391, 1047 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 14 |
| AflII | CTTAAG | 1 cut(s) | 1063 |
| AgsI | TTSAA | 7 cut(s) | 21, 34, 736, 742, 865, 933, 1121 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 883 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 33 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 722, 754 |
| AluBI | AGCT | 8 cut(s) | 226, 315, 580, 915, 936, 954, 1068, 1124 |
| AluI | AGCT | 8 cut(s) | 226, 315, 580, 915, 936, 954, 1068, 1124 |
| Alw21I | GWGCWC | 1 cut(s) | 956 |
| Alw26I | GTCTC | 3 cut(s) | 102, 367, 963 |
| AlwI | GGATC | 2 cut(s) | 788, 801 |
| Ama87I | CYCGRG | 1 cut(s) | 231 |
| ApeKI | GCWGC | 1 cut(s) | 312 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 613, 645 |
| AseI | ATTAAT | 1 cut(s) | 180 |
| AspS9I | GGNCC | 2 cut(s) | 236, 1111 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 357, 586 |
| AvaI | CYCGRG | 1 cut(s) | 231 |
| AvaII | GGWCC | 2 cut(s) | 236, 1111 |
| BamHI | GGATCC | 1 cut(s) | 793 |
| BanI | GGYRCC | 1 cut(s) | 324 |
| BanII | GRGCYC | 1 cut(s) | 956 |
| BauI | CACGAG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 1 cut(s) | 956 |
| BbvI | GCAGC | 1 cut(s) | 324 |
| BccI | CCATC | 3 cut(s) | 647, 721, 802 |
| BceAI | ACGGC | 1 cut(s) | 470 |
| BciVI | GTATCC | 1 cut(s) | 650 |
| BcoDI | GTCTC | 3 cut(s) | 102, 367, 963 |
| BfaI | CTAG | 4 cut(s) | 150, 345, 1031, 1115 |
| BfmI | CTRYAG | 2 cut(s) | 357, 642 |
| BfrI | CTTAAG | 1 cut(s) | 1063 |
| BfuI | GTATCC | 1 cut(s) | 650 |
| BisI | GCNGC | 2 cut(s) | 313, 323 |
| BlsI | GCNGC | 2 cut(s) | 314, 324 |
| Bme18I | GGWCC | 2 cut(s) | 236, 1111 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 883 |
| BmeT110I | CYCGRG | 1 cut(s) | 231 |
| BmgT120I | GGNCC | 2 cut(s) | 236, 1111 |
| BmiI | GGNNCC | 3 cut(s) | 326, 518, 795 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 267, 299, 943, 975 |
| BpuEI | CTTGAG | 1 cut(s) | 945 |
| BsaHI | GRCGYC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 2 cut(s) | 368, 797 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 501, 531 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 14 |
| Bse118I | RCCGGY | 1 cut(s) | 14 |
| BseDI | CCNNGG | 2 cut(s) | 368, 797 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseRI | GAGGAG | 2 cut(s) | 236, 737 |
| BseXI | GCAGC | 1 cut(s) | 324 |
| Bsh1285I | CGRYCG | 1 cut(s) | 847 |
| BshNI | GGYRCC | 1 cut(s) | 324 |
| BsiEI | CGRYCG | 1 cut(s) | 847 |
| BsiHKAI | GWGCWC | 1 cut(s) | 956 |
| BsiHKCI | CYCGRG | 1 cut(s) | 231 |
| BsiSI | CCGG | 1 cut(s) | 15 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BsmAI | GTCTC | 3 cut(s) | 102, 367, 963 |
| BsmBI | CGTCTC | 1 cut(s) | 963 |
| BsoBI | CYCGRG | 1 cut(s) | 231 |
| Bsp1286I | GDGCHC | 1 cut(s) | 956 |
| Bsp143I | GATC | 4 cut(s) | 23, 212, 445, 793 |
| BspACI | CCGC | 2 cut(s) | 164, 322 |
| BspCNI | CTCAG | 1 cut(s) | 112 |
| BspLI | GGNNCC | 3 cut(s) | 326, 518, 795 |
| BspPI | GGATC | 2 cut(s) | 788, 801 |
| BspT107I | GGYRCC | 1 cut(s) | 324 |
| BspTI | CTTAAG | 1 cut(s) | 1063 |
| BsrFI | RCCGGY | 1 cut(s) | 14 |
| BssAI | RCCGGY | 1 cut(s) | 14 |
| BssECI | CCNNGG | 2 cut(s) | 368, 797 |
| BssMI | GATC | 4 cut(s) | 23, 212, 445, 793 |
| BssNI | GRCGYC | 1 cut(s) | 197 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| Bst4CI | ACNGT | 7 cut(s) | 358, 372, 535, 671, 801, 845, 861 |
| BstACI | GRCGYC | 1 cut(s) | 197 |
| BstAFI | CTTAAG | 1 cut(s) | 1063 |
| BstC8I | GCNNGC | 2 cut(s) | 681, 974 |
| BstDEI | CTNAG | 3 cut(s) | 99, 512, 550 |
| BstDSI | CCRYGG | 2 cut(s) | 368, 797 |
| BstKTI | GATC | 4 cut(s) | 26, 215, 448, 796 |
| BstMAI | GTCTC | 3 cut(s) | 102, 367, 963 |
| BstMBI | GATC | 4 cut(s) | 23, 212, 445, 793 |
| BstMCI | CGRYCG | 1 cut(s) | 847 |
| BstNSI | RCATGY | 1 cut(s) | 207 |
| BstSFI | CTRYAG | 2 cut(s) | 357, 642 |
| BstV1I | GCAGC | 1 cut(s) | 324 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 793 |
| BstYI | RGATCY | 1 cut(s) | 793 |
| BsuI | GTATCC | 1 cut(s) | 650 |
| BtgI | CCRYGG | 2 cut(s) | 368, 797 |
| BtsIMutI | CAGTG | 1 cut(s) | 648 |
| Cac8I | GCNNGC | 2 cut(s) | 681, 974 |
| Cfr10I | RCCGGY | 1 cut(s) | 14 |
| Cfr13I | GGNCC | 2 cut(s) | 236, 1111 |
| Csp6I | GTAC | 4 cut(s) | 4, 248, 390, 1046 |
| CviAII | CATG | 6 cut(s) | 89, 204, 401, 443, 685, 1016 |
| CviQI | GTAC | 4 cut(s) | 4, 248, 390, 1046 |
| DdeI | CTNAG | 3 cut(s) | 99, 512, 550 |
| DpnI | GATC | 4 cut(s) | 25, 214, 447, 795 |
| DpnII | GATC | 4 cut(s) | 23, 212, 445, 793 |
| DriI | GACNNNNNGTC | 1 cut(s) | 883 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 883 |
| Ecl136II | GAGCTC | 1 cut(s) | 954 |
| Eco24I | GRGCYC | 1 cut(s) | 956 |
| Eco47I | GGWCC | 2 cut(s) | 236, 1111 |
| Eco53kI | GAGCTC | 1 cut(s) | 954 |
| Eco57I | CTGAAG | 1 cut(s) | 566 |
| Eco88I | CYCGRG | 1 cut(s) | 231 |
| EcoICRI | GAGCTC | 1 cut(s) | 954 |
| EcoO109I | RGGNCCY | 1 cut(s) | 236 |
| EcoT38I | GRGCYC | 1 cut(s) | 956 |
| Esp3I | CGTCTC | 1 cut(s) | 963 |
| FaeI | CATG | 6 cut(s) | 92, 207, 404, 446, 688, 1019 |
| FatI | CATG | 6 cut(s) | 88, 203, 400, 442, 684, 1015 |
| FauI | CCCGC | 1 cut(s) | 157 |
| Fnu4HI | GCNGC | 2 cut(s) | 313, 323 |
| FriOI | GRGCYC | 1 cut(s) | 956 |
| Fsp4HI | GCNGC | 2 cut(s) | 313, 323 |
| FspBI | CTAG | 4 cut(s) | 150, 345, 1031, 1115 |
| GluI | GCNGC | 2 cut(s) | 313, 323 |
| HapII | CCGG | 1 cut(s) | 15 |
| Hin1I | GRCGYC | 1 cut(s) | 197 |
| Hin1II | CATG | 6 cut(s) | 92, 207, 404, 446, 688, 1019 |
| HindIII | AAGCTT | 2 cut(s) | 578, 1122 |
| HinfI | GANTC | 7 cut(s) | 95, 242, 276, 664, 698, 851, 943 |
| HpaII | CCGG | 1 cut(s) | 15 |
| HphI | GGTGA | 3 cut(s) | 128, 357, 586 |
| Hpy166II | GTNNAC | 1 cut(s) | 1046 |
| Hpy188I | TCNGA | 4 cut(s) | 585, 757, 942, 951 |
| Hpy188III | TCNNGA | 4 cut(s) | 21, 239, 742, 848 |
| Hpy8I | GTNNAC | 1 cut(s) | 1046 |
| HpyAV | CCTTC | 4 cut(s) | 128, 183, 467, 859 |
| HpyCH4III | ACNGT | 7 cut(s) | 358, 372, 535, 671, 801, 845, 861 |
| HpyCH4IV | ACGT | 2 cut(s) | 197, 392 |
| HpyCH4V | TGCA | 9 cut(s) | 76, 88, 203, 264, 404, 765, 782, 1056, 1083 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 512, 550 |
| HpySE526I | ACGT | 2 cut(s) | 197, 392 |
| Hsp92I | GRCGYC | 1 cut(s) | 197 |
| Hsp92II | CATG | 6 cut(s) | 92, 207, 404, 446, 688, 1019 |
| Kzo9I | GATC | 4 cut(s) | 23, 212, 445, 793 |
| LmnI | GCTCC | 2 cut(s) | 223, 522 |
| LpnPI | CCDG | 8 cut(s) | 28, 40, 86, 146, 252, 294, 372, 1069 |
| Lsp1109I | GCAGC | 1 cut(s) | 324 |
| MaeI | CTAG | 4 cut(s) | 150, 345, 1031, 1115 |
| MaeII | ACGT | 2 cut(s) | 197, 392 |
| MaeIII | GTNAC | 3 cut(s) | 172, 347, 875 |
| MalI | GATC | 4 cut(s) | 25, 214, 447, 795 |
| MboI | GATC | 4 cut(s) | 23, 212, 445, 793 |
| MboII | GAAGA | 4 cut(s) | 131, 134, 205, 846 |
| MflI | RGATCY | 1 cut(s) | 793 |
| MhlI | GDGCHC | 1 cut(s) | 956 |
| MluCI | AATT | 1 cut(s) | 177 |
| MlyI | GAGTC | 4 cut(s) | 104, 285, 658, 937 |
| MmeI | TCCRAC | 4 cut(s) | 188, 735, 771, 965 |
| MnlI | CCTC | 8 cut(s) | 131, 161, 214, 227, 240, 421, 715, 982 |
| MseI | TTAA | 7 cut(s) | 180, 537, 603, 804, 918, 1010, 1064 |
| MspCI | CTTAAG | 1 cut(s) | 1063 |
| MspI | CCGG | 1 cut(s) | 15 |
| NdeII | GATC | 4 cut(s) | 23, 212, 445, 793 |
| NlaIII | CATG | 6 cut(s) | 92, 207, 404, 446, 688, 1019 |
| NlaIV | GGNNCC | 3 cut(s) | 326, 518, 795 |
| NmuCI | GTSAC | 3 cut(s) | 172, 347, 875 |
| NspI | RCATGY | 1 cut(s) | 207 |
| PaeR7I | CTCGAG | 1 cut(s) | 231 |
| PfeI | GAWTC | 3 cut(s) | 242, 698, 851 |
| PkrI | GCNGC | 2 cut(s) | 314, 324 |
| PleI | GAGTC | 4 cut(s) | 103, 284, 658, 937 |
| PpsI | GAGTC | 4 cut(s) | 103, 284, 658, 937 |
| PpuMI | RGGWCCY | 1 cut(s) | 236 |
| PshBI | ATTAAT | 1 cut(s) | 180 |
| Psp124BI | GAGCTC | 1 cut(s) | 956 |
| Psp5II | RGGWCCY | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 3 cut(s) | 326, 518, 795 |
| PspPI | GGNCC | 2 cut(s) | 236, 1111 |
| PspPPI | RGGWCCY | 1 cut(s) | 236 |
| PspXI | VCTCGAGB | 1 cut(s) | 231 |
| PsuI | RGATCY | 1 cut(s) | 793 |
| RsaI | GTAC | 4 cut(s) | 5, 249, 391, 1047 |
| RsaNI | GTAC | 4 cut(s) | 4, 248, 390, 1046 |
| SacI | GAGCTC | 1 cut(s) | 956 |
| SaqAI | TTAA | 7 cut(s) | 180, 537, 603, 804, 918, 1010, 1064 |
| SatI | GCNGC | 2 cut(s) | 313, 323 |
| Sau3AI | GATC | 4 cut(s) | 23, 212, 445, 793 |
| Sau96I | GGNCC | 2 cut(s) | 236, 1111 |
| SchI | GAGTC | 4 cut(s) | 104, 285, 658, 937 |
| SduI | GDGCHC | 1 cut(s) | 956 |
| SfcI | CTRYAG | 2 cut(s) | 357, 642 |
| Sfr274I | CTCGAG | 1 cut(s) | 231 |
| SinI | GGWCC | 2 cut(s) | 236, 1111 |
| SlaI | CTCGAG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 3 cut(s) | 231, 960, 1063 |
| SmoI | CTYRAG | 3 cut(s) | 231, 960, 1063 |
| Sse9I | AATT | 1 cut(s) | 177 |
| SsiI | CCGC | 2 cut(s) | 164, 322 |
| SspMI | CTAG | 4 cut(s) | 150, 345, 1031, 1115 |
| SstI | GAGCTC | 1 cut(s) | 956 |
| TaaI | ACNGT | 7 cut(s) | 358, 372, 535, 671, 801, 845, 861 |
| TaiI | ACGT | 2 cut(s) | 200, 395 |
| TaqI | TCGA | 1 cut(s) | 232 |
| TasI | AATT | 1 cut(s) | 177 |
| TatI | WGTACW | 2 cut(s) | 247, 1045 |
| TauI | GCSGC | 1 cut(s) | 325 |
| TfiI | GAWTC | 3 cut(s) | 242, 698, 851 |
| Tru1I | TTAA | 7 cut(s) | 180, 537, 603, 804, 918, 1010, 1064 |
| Tru9I | TTAA | 7 cut(s) | 180, 537, 603, 804, 918, 1010, 1064 |
| TscAI | CASTG | 1 cut(s) | 655 |
| TseFI | GTSAC | 3 cut(s) | 172, 347, 875 |
| TseI | GCWGC | 1 cut(s) | 312 |
| Tsp45I | GTSAC | 3 cut(s) | 172, 347, 875 |
| TspDTI | ATGAA | 3 cut(s) | 486, 701, 722 |
| TspRI | CASTG | 1 cut(s) | 655 |
| Vha464I | CTTAAG | 1 cut(s) | 1063 |
| VpaK11BI | GGWCC | 2 cut(s) | 236, 1111 |
| VspI | ATTAAT | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 207 |
| XhoI | CTCGAG | 1 cut(s) | 231 |
| XspI | CTAG | 4 cut(s) | 150, 345, 1031, 1115 |
| ZraI | GACGTC | 1 cut(s) | 198 |