BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_35 | PF01301 | 50 - 356 | 8.5e-117 | Glycosyl hydrolases family 35 |
| Glyco_hydro_42 | PF02449 | 72 - 203 | 6e-08 | Beta-galactosidase |
| GHD | PF17834 | 380 - 436 | 1.9e-20 | Beta-sandwich domain in beta galactosidase |
| BetaGal_gal-bd | PF21467 | 636 - 702 | 3.1e-24 | Beta-galactosidase, galactose-binding domain |
| SUEL_Lectin | PF02140 | 762 - 841 | 6e-15 | D-galactoside/L-rhamnose binding SUEL lectin domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1133 |
| Acc65I | GGTACC | 1 cut(s) | 7 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccI | GTMKAC | 1 cut(s) | 1293 |
| AccII | CGCG | 1 cut(s) | 2279 |
| AccIII | TCCGGA | 1 cut(s) | 1601 |
| AciI | CCGC | 8 cut(s) | 5, 864, 892, 1253, 1713, 2277, 2279, 2452 |
| AclI | AACGTT | 1 cut(s) | 681 |
| AclWI | GGATC | 7 cut(s) | 704, 719, 839, 1831, 1867, 2076, 2333 |
| AcoI | YGGCCR | 4 cut(s) | 666, 1188, 1353, 2014 |
| AcuI | CTGAAG | 3 cut(s) | 1365, 1872, 1959 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 308, 816, 1608, 1712 |
| AflIII | ACRYGT | 2 cut(s) | 930, 1509 |
| AgeI | ACCGGT | 1 cut(s) | 1534 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1698 |
| AjnI | CCWGG | 3 cut(s) | 17, 1105, 1502 |
| AleI | CACNNNNGTG | 1 cut(s) | 99 |
| Alw21I | GWGCWC | 3 cut(s) | 916, 1440, 1731 |
| Alw26I | GTCTC | 3 cut(s) | 853, 1066, 1559 |
| AlwI | GGATC | 7 cut(s) | 704, 719, 839, 1831, 1867, 2076, 2333 |
| Ama87I | CYCGRG | 1 cut(s) | 1133 |
| Aor13HI | TCCGGA | 1 cut(s) | 1601 |
| ApaI | GGGCCC | 1 cut(s) | 129 |
| ApeKI | GCWGC | 6 cut(s) | 59, 151, 656, 1178, 2184, 2433 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1537, 1569, 2204, 2236, 2295, 2327 |
| AseI | ATTAAT | 1 cut(s) | 735 |
| AsiGI | ACCGGT | 1 cut(s) | 1534 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1389, 1527 |
| Asp718I | GGTACC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 9 cut(s) | 125, 126, 398, 454, 569, 776, 807, 1030, 1742 |
| AsuC2I | CCSGG | 2 cut(s) | 775, 1663 |
| AsuHPI | GGTGA | 9 cut(s) | 316, 355, 742, 854, 1037, 1598, 1892, 2008, 2015 |
| AvaI | CYCGRG | 1 cut(s) | 1133 |
| AvaII | GGWCC | 3 cut(s) | 454, 807, 1030 |
| BaeGI | GKGCMC | 1 cut(s) | 129 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1296, 1329 |
| BalI | TGGCCA | 2 cut(s) | 1190, 1355 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BanII | GRGCYC | 3 cut(s) | 129, 916, 1440 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 299, 331 |
| BauI | CACGAG | 1 cut(s) | 296 |
| BbsI | GAAGAC | 4 cut(s) | 1371, 1627, 1694, 1837 |
| Bbv12I | GWGCWC | 3 cut(s) | 916, 1440, 1731 |
| BbvI | GCAGC | 6 cut(s) | 46, 138, 668, 1165, 2196, 2420 |
| BccI | CCATC | 8 cut(s) | 92, 134, 645, 658, 1316, 1362, 1366, 2516 |
| BceAI | ACGGC | 1 cut(s) | 653 |
| BciT130I | CCWGG | 3 cut(s) | 19, 1107, 1504 |
| BcnI | CCSGG | 2 cut(s) | 775, 1663 |
| BcoDI | GTCTC | 3 cut(s) | 853, 1066, 1559 |
| BfaI | CTAG | 3 cut(s) | 1763, 2045, 2430 |
| BfmI | CTRYAG | 3 cut(s) | 60, 1441, 1782 |
| BglII | AGATCT | 1 cut(s) | 1786 |
| BisI | GCNGC | 6 cut(s) | 60, 152, 657, 1179, 2185, 2434 |
| BlsI | GCNGC | 6 cut(s) | 61, 153, 658, 1180, 2186, 2435 |
| BmcAI | AGTACT | 1 cut(s) | 497 |
| Bme1390I | CCNGG | 5 cut(s) | 19, 775, 1107, 1504, 1663 |
| Bme18I | GGWCC | 3 cut(s) | 454, 807, 1030 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1698 |
| BmeT110I | CYCGRG | 1 cut(s) | 1133 |
| BmgT120I | GGNCC | 9 cut(s) | 125, 126, 398, 454, 569, 776, 807, 1030, 1742 |
| BmiI | GGNNCC | 9 cut(s) | 9, 127, 422, 456, 1031, 1032, 1600, 1613, 2130 |
| BmrFI | CCNGG | 5 cut(s) | 19, 775, 1107, 1504, 1663 |
| BmsI | GCATC | 4 cut(s) | 706, 1275, 1819, 1921 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1289 |
| BpiI | GAAGAC | 4 cut(s) | 1371, 1627, 1694, 1837 |
| BpuEI | CTTGAG | 2 cut(s) | 546, 1034 |
| BpuMI | CCSGG | 2 cut(s) | 775, 1663 |
| BsaI | GGTCTC | 1 cut(s) | 853 |
| BsaWI | WCCGGW | 3 cut(s) | 727, 1534, 1601 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 703, 733 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 308, 816, 1608, 1712 |
| Bse118I | RCCGGY | 3 cut(s) | 301, 1534, 2016 |
| Bse1I | ACTGG | 3 cut(s) | 821, 1780, 2027 |
| Bse3DI | GCAATG | 1 cut(s) | 1572 |
| BseAI | TCCGGA | 1 cut(s) | 1601 |
| BseBI | CCWGG | 3 cut(s) | 19, 1107, 1504 |
| BseGI | GGATG | 8 cut(s) | 669, 1266, 1377, 2031, 2073, 2203, 2273, 2508 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 308, 816, 1608, 1712 |
| BseMI | GCAATG | 1 cut(s) | 1572 |
| BseMII | CTCAG | 3 cut(s) | 437, 839, 2187 |
| BseNI | ACTGG | 3 cut(s) | 821, 1780, 2027 |
| BseRI | GAGGAG | 2 cut(s) | 2031, 2141 |
| BseSI | GKGCMC | 1 cut(s) | 129 |
| BseXI | GCAGC | 6 cut(s) | 46, 138, 668, 1165, 2196, 2420 |
| Bsh1236I | CGCG | 1 cut(s) | 2279 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BshTI | ACCGGT | 1 cut(s) | 1534 |
| BsiHKAI | GWGCWC | 3 cut(s) | 916, 1440, 1731 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1133 |
| BsiSI | CCGG | 7 cut(s) | 302, 728, 774, 1535, 1602, 1662, 2017 |
| BslFI | GGGAC | 4 cut(s) | 440, 958, 1043, 1520 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 308, 816, 1608, 1712 |
| BsmAI | GTCTC | 3 cut(s) | 853, 1066, 1559 |
| BsmFI | GGGAC | 4 cut(s) | 440, 958, 1043, 1520 |
| BsmI | GAATGC | 1 cut(s) | 1255 |
| Bso31I | GGTCTC | 1 cut(s) | 853 |
| BsoBI | CYCGRG | 1 cut(s) | 1133 |
| Bsp120I | GGGCCC | 1 cut(s) | 125 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 916, 1440, 1731 |
| Bsp13I | TCCGGA | 1 cut(s) | 1601 |
| Bsp19I | CCATGG | 3 cut(s) | 424, 692, 937 |
| BspACI | CCGC | 8 cut(s) | 5, 864, 892, 1253, 1713, 2277, 2279, 2452 |
| BspCNI | CTCAG | 3 cut(s) | 438, 838, 2188 |
| BspEI | TCCGGA | 1 cut(s) | 1601 |
| BspFNI | CGCG | 1 cut(s) | 2279 |
| BspLI | GGNNCC | 9 cut(s) | 9, 127, 422, 456, 1031, 1032, 1600, 1613, 2130 |
| BspMAI | CTGCAG | 1 cut(s) | 64 |
| BspPI | GGATC | 7 cut(s) | 704, 719, 839, 1831, 1867, 2076, 2333 |
| BspQI | GCTCTTC | 1 cut(s) | 1619 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BspTNI | GGTCTC | 1 cut(s) | 853 |
| BsrDI | GCAATG | 1 cut(s) | 1572 |
| BsrFI | RCCGGY | 3 cut(s) | 301, 1534, 2016 |
| BsrI | ACTGG | 3 cut(s) | 821, 1780, 2027 |
| BssAI | RCCGGY | 3 cut(s) | 301, 1534, 2016 |
| BssSI | CACGAG | 1 cut(s) | 296 |
| BssT1I | CCWWGG | 6 cut(s) | 82, 424, 692, 937, 1025, 2367 |
| Bst2BI | CACGAG | 1 cut(s) | 296 |
| Bst2UI | CCWGG | 3 cut(s) | 19, 1107, 1504 |
| Bst4CI | ACNGT | 4 cut(s) | 1288, 1402, 1431, 1696 |
| Bst6I | CTCTTC | 4 cut(s) | 1619, 1848, 2118, 2249 |
| BstDEI | CTNAG | 6 cut(s) | 446, 825, 1076, 1120, 2196, 2526 |
| BstDSI | CCRYGG | 4 cut(s) | 424, 692, 937, 2277 |
| BstF5I | GGATG | 8 cut(s) | 669, 1266, 1377, 2031, 2073, 2203, 2273, 2508 |
| BstFNI | CGCG | 1 cut(s) | 2279 |
| BstMAI | GTCTC | 3 cut(s) | 853, 1066, 1559 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 65, 665, 784, 793, 1187, 1685, 2137 |
| BstNI | CCWGG | 3 cut(s) | 19, 1107, 1504 |
| BstNSI | RCATGY | 2 cut(s) | 934, 1513 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1289 |
| BstSCI | CCNGG | 5 cut(s) | 17, 773, 1105, 1502, 1661 |
| BstSFI | CTRYAG | 3 cut(s) | 60, 1441, 1782 |
| BstSLI | GKGCMC | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 2279 |
| BstV1I | GCAGC | 6 cut(s) | 46, 138, 668, 1165, 2196, 2420 |
| BstV2I | GAAGAC | 4 cut(s) | 1371, 1627, 1694, 1837 |
| BstX2I | RGATCY | 3 cut(s) | 1786, 1836, 2081 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 101, 222 |
| BstYI | RGATCY | 3 cut(s) | 1786, 1836, 2081 |
| BtgI | CCRYGG | 4 cut(s) | 424, 692, 937, 2277 |
| BtsCI | GGATG | 8 cut(s) | 669, 1266, 1377, 2031, 2073, 2203, 2273, 2508 |
| BtsI | GCAGTG | 1 cut(s) | 2413 |
| BtsIMutI | CAGTG | 4 cut(s) | 1773, 1848, 2020, 2413 |
| Cfr10I | RCCGGY | 3 cut(s) | 301, 1534, 2016 |
| Cfr13I | GGNCC | 9 cut(s) | 125, 126, 398, 454, 569, 776, 807, 1030, 1742 |
| Cfr42I | CCGCGG | 1 cut(s) | 2280 |
| CspAI | ACCGGT | 1 cut(s) | 1534 |
| DdeI | CTNAG | 6 cut(s) | 446, 825, 1076, 1120, 2196, 2526 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1698 |
| EaeI | YGGCCR | 4 cut(s) | 666, 1188, 1353, 2014 |
| Eam1104I | CTCTTC | 4 cut(s) | 1619, 1848, 2118, 2249 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1698 |
| EarI | CTCTTC | 4 cut(s) | 1619, 1848, 2118, 2249 |
| Ecl136II | GAGCTC | 2 cut(s) | 914, 1438 |
| Eco130I | CCWWGG | 6 cut(s) | 82, 424, 692, 937, 1025, 2367 |
| Eco24I | GRGCYC | 3 cut(s) | 129, 916, 1440 |
| Eco31I | GGTCTC | 1 cut(s) | 853 |
| Eco32I | GATATC | 1 cut(s) | 2491 |
| Eco47I | GGWCC | 3 cut(s) | 454, 807, 1030 |
| Eco53kI | GAGCTC | 2 cut(s) | 914, 1438 |
| Eco57I | CTGAAG | 3 cut(s) | 1365, 1872, 1959 |
| Eco88I | CYCGRG | 1 cut(s) | 1133 |
| EcoICRI | GAGCTC | 2 cut(s) | 914, 1438 |
| EcoO109I | RGGNCCY | 4 cut(s) | 125, 454, 1030, 1742 |
| EcoRII | CCWGG | 3 cut(s) | 17, 1105, 1502 |
| EcoRV | GATATC | 1 cut(s) | 2491 |
| EcoT14I | CCWWGG | 6 cut(s) | 82, 424, 692, 937, 1025, 2367 |
| EcoT38I | GRGCYC | 3 cut(s) | 129, 916, 1440 |
| ErhI | CCWWGG | 6 cut(s) | 82, 424, 692, 937, 1025, 2367 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 990, 1022, 2447, 2479 |
| FaqI | GGGAC | 4 cut(s) | 440, 958, 1043, 1520 |
| FauI | CCCGC | 2 cut(s) | 871, 899 |
| FauNDI | CATATG | 1 cut(s) | 136 |
| FblI | GTMKAC | 1 cut(s) | 1293 |
| Fnu4HI | GCNGC | 6 cut(s) | 60, 152, 657, 1179, 2185, 2434 |
| FokI | GGATG | 8 cut(s) | 676, 1253, 1384, 2038, 2060, 2190, 2260, 2495 |
| FriOI | GRGCYC | 3 cut(s) | 129, 916, 1440 |
| Fsp4HI | GCNGC | 6 cut(s) | 60, 152, 657, 1179, 2185, 2434 |
| FspBI | CTAG | 3 cut(s) | 1763, 2045, 2430 |
| GluI | GCNGC | 6 cut(s) | 60, 152, 657, 1179, 2185, 2434 |
| HapII | CCGG | 7 cut(s) | 302, 728, 774, 1535, 1602, 1662, 2017 |
| HincII | GTYRAC | 2 cut(s) | 1669, 2167 |
| HindII | GTYRAC | 2 cut(s) | 1669, 2167 |
| HindIII | AAGCTT | 3 cut(s) | 356, 2329, 2456 |
| HinfI | GANTC | 5 cut(s) | 636, 1042, 1376, 1498, 2381 |
| HpaII | CCGG | 7 cut(s) | 302, 728, 774, 1535, 1602, 1662, 2017 |
| HphI | GGTGA | 9 cut(s) | 316, 355, 742, 854, 1037, 1598, 1892, 2008, 2015 |
| Hpy166II | GTNNAC | 5 cut(s) | 529, 1294, 1479, 1669, 2167 |
| Hpy8I | GTNNAC | 5 cut(s) | 529, 1294, 1479, 1669, 2167 |
| Hpy99I | CGWCG | 1 cut(s) | 1622 |
| HpyAV | CCTTC | 8 cut(s) | 301, 398, 744, 1256, 1513, 1934, 2095, 2117 |
| HpyCH4III | ACNGT | 4 cut(s) | 1288, 1402, 1431, 1696 |
| HpyCH4IV | ACGT | 1 cut(s) | 681 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 65, 665, 784, 793, 1187, 1685, 2137 |
| HpyF3I | CTNAG | 6 cut(s) | 446, 825, 1076, 1120, 2196, 2526 |
| HpySE526I | ACGT | 1 cut(s) | 681 |
| KflI | GGGWCCC | 1 cut(s) | 1030 |
| Kpn2I | TCCGGA | 1 cut(s) | 1601 |
| KpnI | GGTACC | 1 cut(s) | 11 |
| KroI | GCCGGC | 1 cut(s) | 2016 |
| KroNI | GCCGGC | 1 cut(s) | 2018 |
| KspI | CCGCGG | 1 cut(s) | 2280 |
| LguI | GCTCTTC | 1 cut(s) | 1619 |
| LmnI | GCTCC | 9 cut(s) | 20, 724, 911, 1435, 1611, 1715, 1726, 1939, 2128 |
| Lsp1109I | GCAGC | 6 cut(s) | 46, 138, 668, 1165, 2196, 2420 |
| LweI | GCATC | 4 cut(s) | 706, 1275, 1819, 1921 |
| MaeI | CTAG | 3 cut(s) | 1763, 2045, 2430 |
| MaeII | ACGT | 1 cut(s) | 681 |
| MaeIII | GTNAC | 6 cut(s) | 130, 382, 514, 743, 1043, 1559 |
| MfeI | CAATTG | 1 cut(s) | 1215 |
| MflI | RGATCY | 3 cut(s) | 1786, 1836, 2081 |
| MhlI | GDGCHC | 4 cut(s) | 129, 916, 1440, 1731 |
| MlsI | TGGCCA | 2 cut(s) | 1190, 1355 |
| MluNI | TGGCCA | 2 cut(s) | 1190, 1355 |
| MlyI | GAGTC | 3 cut(s) | 1051, 1385, 2375 |
| MmeI | TCCRAC | 3 cut(s) | 664, 1413, 2272 |
| Mox20I | TGGCCA | 2 cut(s) | 1190, 1355 |
| MroI | TCCGGA | 1 cut(s) | 1601 |
| MroNI | GCCGGC | 1 cut(s) | 2016 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1389, 1527 |
| MscI | TGGCCA | 2 cut(s) | 1190, 1355 |
| MseI | TTAA | 6 cut(s) | 29, 354, 735, 1221, 1655, 1962 |
| MslI | CAYNNNNRTG | 4 cut(s) | 99, 1514, 1734, 2513 |
| Msp20I | TGGCCA | 2 cut(s) | 1190, 1355 |
| MspA1I | CMGCKG | 2 cut(s) | 59, 2279 |
| MspI | CCGG | 7 cut(s) | 302, 728, 774, 1535, 1602, 1662, 2017 |
| MspR9I | CCNGG | 5 cut(s) | 19, 775, 1107, 1504, 1663 |
| MunI | CAATTG | 1 cut(s) | 1215 |
| Mva1269I | GAATGC | 1 cut(s) | 1255 |
| MvaI | CCWGG | 3 cut(s) | 19, 1107, 1504 |
| MvnI | CGCG | 1 cut(s) | 2279 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 65, 665, 784, 793, 1187, 1685, 2137 |
| NaeI | GCCGGC | 1 cut(s) | 2018 |
| NciI | CCSGG | 2 cut(s) | 775, 1663 |
| NcoI | CCATGG | 3 cut(s) | 424, 692, 937 |
| NdeI | CATATG | 1 cut(s) | 136 |
| NgoMIV | GCCGGC | 1 cut(s) | 2016 |
| NlaIV | GGNNCC | 9 cut(s) | 9, 127, 422, 456, 1031, 1032, 1600, 1613, 2130 |
| NmuCI | GTSAC | 3 cut(s) | 514, 1043, 1559 |
| NspI | RCATGY | 2 cut(s) | 934, 1513 |
| OliI | CACNNNNGTG | 1 cut(s) | 99 |
| PaeR7I | CTCGAG | 1 cut(s) | 1133 |
| PasI | CCCWGGG | 1 cut(s) | 1503 |
| PciI | ACATGT | 2 cut(s) | 930, 1509 |
| PciSI | GCTCTTC | 1 cut(s) | 1619 |
| PctI | GAATGC | 1 cut(s) | 1255 |
| PdiI | GCCGGC | 1 cut(s) | 2018 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1389, 1527 |
| PfeI | GAWTC | 2 cut(s) | 636, 1498 |
| PinAI | ACCGGT | 1 cut(s) | 1534 |
| PkrI | GCNGC | 6 cut(s) | 61, 153, 658, 1180, 2186, 2435 |
| PleI | GAGTC | 3 cut(s) | 1050, 1384, 2375 |
| PpsI | GAGTC | 3 cut(s) | 1050, 1384, 2375 |
| PpuMI | RGGWCCY | 2 cut(s) | 454, 1030 |
| PscI | ACATGT | 2 cut(s) | 930, 1509 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1289 |
| PshBI | ATTAAT | 1 cut(s) | 735 |
| Psp124BI | GAGCTC | 2 cut(s) | 916, 1440 |
| Psp1406I | AACGTT | 1 cut(s) | 681 |
| Psp5II | RGGWCCY | 2 cut(s) | 454, 1030 |
| Psp6I | CCWGG | 3 cut(s) | 17, 1105, 1502 |
| PspGI | CCWGG | 3 cut(s) | 17, 1105, 1502 |
| PspN4I | GGNNCC | 9 cut(s) | 9, 127, 422, 456, 1031, 1032, 1600, 1613, 2130 |
| PspOMI | GGGCCC | 1 cut(s) | 125 |
| PspPI | GGNCC | 9 cut(s) | 125, 126, 398, 454, 569, 776, 807, 1030, 1742 |
| PspPPI | RGGWCCY | 2 cut(s) | 454, 1030 |
| PspXI | VCTCGAGB | 1 cut(s) | 1133 |
| PstI | CTGCAG | 1 cut(s) | 64 |
| PsuI | RGATCY | 3 cut(s) | 1786, 1836, 2081 |
| PvuII | CAGCTG | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 4 cut(s) | 99, 1514, 1734, 2513 |
| SacI | GAGCTC | 2 cut(s) | 916, 1440 |
| SacII | CCGCGG | 1 cut(s) | 2280 |
| SapI | GCTCTTC | 1 cut(s) | 1619 |
| SaqAI | TTAA | 6 cut(s) | 29, 354, 735, 1221, 1655, 1962 |
| SatI | GCNGC | 6 cut(s) | 60, 152, 657, 1179, 2185, 2434 |
| Sau96I | GGNCC | 9 cut(s) | 125, 126, 398, 454, 569, 776, 807, 1030, 1742 |
| ScaI | AGTACT | 1 cut(s) | 497 |
| SchI | GAGTC | 3 cut(s) | 1051, 1385, 2375 |
| ScrFI | CCNGG | 5 cut(s) | 19, 775, 1107, 1504, 1663 |
| SduI | GDGCHC | 4 cut(s) | 129, 916, 1440, 1731 |
| SfaNI | GCATC | 4 cut(s) | 706, 1275, 1819, 1921 |
| SfcI | CTRYAG | 3 cut(s) | 60, 1441, 1782 |
| Sfr274I | CTCGAG | 1 cut(s) | 1133 |
| Sfr303I | CCGCGG | 1 cut(s) | 2280 |
| SgrBI | CCGCGG | 1 cut(s) | 2280 |
| SinI | GGWCC | 3 cut(s) | 454, 807, 1030 |
| SlaI | CTCGAG | 1 cut(s) | 1133 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 99, 1514, 1734, 2513 |
| SmlI | CTYRAG | 3 cut(s) | 561, 1049, 1133 |
| SmoI | CTYRAG | 3 cut(s) | 561, 1049, 1133 |
| SsiI | CCGC | 8 cut(s) | 5, 864, 892, 1253, 1713, 2277, 2279, 2452 |
| SspI | AATATT | 1 cut(s) | 468 |
| SspMI | CTAG | 3 cut(s) | 1763, 2045, 2430 |
| SstI | GAGCTC | 2 cut(s) | 916, 1440 |
| StyD4I | CCNGG | 5 cut(s) | 17, 773, 1105, 1502, 1661 |
| StyI | CCWWGG | 6 cut(s) | 82, 424, 692, 937, 1025, 2367 |
| TaaI | ACNGT | 4 cut(s) | 1288, 1402, 1431, 1696 |
| TaiI | ACGT | 1 cut(s) | 684 |
| TaqI | TCGA | 5 cut(s) | 391, 591, 1134, 1862, 2313 |
| TaqII | GACCGA | 3 cut(s) | 728, 824, 1547 |
| TatI | WGTACW | 2 cut(s) | 495, 828 |
| TfiI | GAWTC | 2 cut(s) | 636, 1498 |
| Tru1I | TTAA | 6 cut(s) | 29, 354, 735, 1221, 1655, 1962 |
| Tru9I | TTAA | 6 cut(s) | 29, 354, 735, 1221, 1655, 1962 |
| TscAI | CASTG | 4 cut(s) | 1780, 1855, 2027, 2420 |
| TseFI | GTSAC | 3 cut(s) | 514, 1043, 1559 |
| TseI | GCWGC | 6 cut(s) | 59, 151, 656, 1178, 2184, 2433 |
| Tsp45I | GTSAC | 3 cut(s) | 514, 1043, 1559 |
| TspDTI | ATGAA | 9 cut(s) | 185, 340, 394, 518, 1532, 1905, 2077, 2179, 2340 |
| TspGWI | ACGGA | 1 cut(s) | 762 |
| TspRI | CASTG | 4 cut(s) | 1780, 1855, 2027, 2420 |
| VpaK11BI | GGWCC | 3 cut(s) | 454, 807, 1030 |
| VspI | ATTAAT | 1 cut(s) | 735 |
| XceI | RCATGY | 2 cut(s) | 934, 1513 |
| XhoI | CTCGAG | 1 cut(s) | 1133 |
| XmiI | GTMKAC | 1 cut(s) | 1293 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1389, 1527 |
| XspI | CTAG | 3 cut(s) | 1763, 2045, 2430 |
| ZrmI | AGTACT | 1 cut(s) | 497 |