Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 171 - 269 | 8.2e-26 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 194, 689, 702 |
| AcsI | RAATTY | 4 cut(s) | 4, 100, 266, 343 |
| AcuI | CTGAAG | 1 cut(s) | 462 |
| AfaI | GTAC | 1 cut(s) | 370 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 784 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 623, 655 |
| AluBI | AGCT | 3 cut(s) | 816, 837, 855 |
| AluI | AGCT | 3 cut(s) | 816, 837, 855 |
| Alw21I | GWGCWC | 2 cut(s) | 157, 857 |
| Alw26I | GTCTC | 3 cut(s) | 24, 455, 864 |
| Alw44I | GTGCAC | 1 cut(s) | 153 |
| AlwI | GGATC | 3 cut(s) | 194, 689, 702 |
| ApaLI | GTGCAC | 1 cut(s) | 153 |
| ApoI | RAATTY | 4 cut(s) | 4, 100, 266, 343 |
| AseI | ATTAAT | 1 cut(s) | 119 |
| AspA2I | CCTAGG | 1 cut(s) | 478 |
| AsuHPI | GGTGA | 2 cut(s) | 50, 418 |
| AvrII | CCTAGG | 1 cut(s) | 478 |
| BaeGI | GKGCMC | 1 cut(s) | 157 |
| BamHI | GGATCC | 1 cut(s) | 694 |
| BanII | GRGCYC | 1 cut(s) | 857 |
| Bbv12I | GWGCWC | 2 cut(s) | 157, 857 |
| BccI | CCATC | 6 cut(s) | 119, 176, 333, 451, 622, 703 |
| BcoDI | GTCTC | 3 cut(s) | 24, 455, 864 |
| BfaI | CTAG | 1 cut(s) | 479 |
| BlnI | CCTAGG | 1 cut(s) | 478 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 784 |
| BmiI | GGNNCC | 2 cut(s) | 61, 696 |
| BmsI | GCATC | 1 cut(s) | 348 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 844, 876 |
| BpuEI | CTTGAG | 1 cut(s) | 846 |
| BsaJI | CCNNGG | 3 cut(s) | 63, 478, 698 |
| BseDI | CCNNGG | 3 cut(s) | 63, 478, 698 |
| BseGI | GGATG | 1 cut(s) | 130 |
| BseMII | CTCAG | 1 cut(s) | 35 |
| BseRI | GAGGAG | 1 cut(s) | 638 |
| BseSI | GKGCMC | 1 cut(s) | 157 |
| BsiHKAI | GWGCWC | 2 cut(s) | 157, 857 |
| BsmAI | GTCTC | 3 cut(s) | 24, 455, 864 |
| BsmBI | CGTCTC | 1 cut(s) | 864 |
| Bsp1286I | GDGCHC | 2 cut(s) | 157, 857 |
| Bsp143I | GATC | 2 cut(s) | 199, 694 |
| Bsp19I | CCATGG | 1 cut(s) | 63 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspLI | GGNNCC | 2 cut(s) | 61, 696 |
| BspPI | GGATC | 3 cut(s) | 194, 689, 702 |
| BssECI | CCNNGG | 3 cut(s) | 63, 478, 698 |
| BssMI | GATC | 2 cut(s) | 199, 694 |
| BssT1I | CCWWGG | 2 cut(s) | 63, 478 |
| Bst4CI | ACNGT | 3 cut(s) | 368, 702, 762 |
| Bst6I | CTCTTC | 3 cut(s) | 253, 380, 438 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 328 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 582, 875 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 698 |
| BstF5I | GGATG | 1 cut(s) | 130 |
| BstKTI | GATC | 2 cut(s) | 202, 697 |
| BstMAI | GTCTC | 3 cut(s) | 24, 455, 864 |
| BstMBI | GATC | 2 cut(s) | 199, 694 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 328 |
| BstNSI | RCATGY | 1 cut(s) | 389 |
| BstSLI | GKGCMC | 1 cut(s) | 157 |
| BstX2I | RGATCY | 1 cut(s) | 694 |
| BstYI | RGATCY | 1 cut(s) | 694 |
| BtgI | CCRYGG | 2 cut(s) | 63, 698 |
| BtgZI | GCGATG | 1 cut(s) | 774 |
| BtsCI | GGATG | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 582, 875 |
| Csp6I | GTAC | 1 cut(s) | 369 |
| CviAII | CATG | 5 cut(s) | 11, 64, 140, 386, 586 |
| CviJI | RGCY | 7 cut(s) | 62, 111, 584, 728, 816, 837, 855 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 111, 584, 728, 816, 837, 855 |
| CviQI | GTAC | 1 cut(s) | 369 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 2 cut(s) | 201, 696 |
| DpnII | GATC | 2 cut(s) | 199, 694 |
| DriI | GACNNNNNGTC | 1 cut(s) | 784 |
| Eam1104I | CTCTTC | 3 cut(s) | 253, 380, 438 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 3 cut(s) | 253, 380, 438 |
| Ecl136II | GAGCTC | 1 cut(s) | 855 |
| Eco130I | CCWWGG | 2 cut(s) | 63, 478 |
| Eco24I | GRGCYC | 1 cut(s) | 857 |
| Eco53kI | GAGCTC | 1 cut(s) | 855 |
| Eco57I | CTGAAG | 1 cut(s) | 462 |
| EcoICRI | GAGCTC | 1 cut(s) | 855 |
| EcoRI | GAATTC | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 63, 478 |
| EcoT38I | GRGCYC | 1 cut(s) | 857 |
| ErhI | CCWWGG | 2 cut(s) | 63, 478 |
| Esp3I | CGTCTC | 1 cut(s) | 864 |
| FaeI | CATG | 5 cut(s) | 14, 67, 143, 389, 589 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 315, 347 |
| FatI | CATG | 5 cut(s) | 10, 63, 139, 385, 585 |
| FauNDI | CATATG | 1 cut(s) | 205 |
| FokI | GGATG | 1 cut(s) | 137 |
| FriOI | GRGCYC | 1 cut(s) | 857 |
| FspBI | CTAG | 1 cut(s) | 479 |
| Hin1II | CATG | 5 cut(s) | 14, 67, 143, 389, 589 |
| HinfI | GANTC | 6 cut(s) | 17, 68, 132, 599, 752, 844 |
| HphI | GGTGA | 2 cut(s) | 50, 418 |
| Hpy166II | GTNNAC | 2 cut(s) | 155, 371 |
| Hpy188I | TCNGA | 5 cut(s) | 250, 286, 658, 843, 852 |
| Hpy188III | TCNNGA | 5 cut(s) | 163, 179, 513, 643, 749 |
| Hpy8I | GTNNAC | 2 cut(s) | 155, 371 |
| HpyAV | CCTTC | 2 cut(s) | 50, 760 |
| HpyCH4III | ACNGT | 3 cut(s) | 368, 702, 762 |
| HpyCH4V | TGCA | 5 cut(s) | 10, 155, 212, 666, 683 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 328 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| Hsp92II | CATG | 5 cut(s) | 14, 67, 143, 389, 589 |
| Kzo9I | GATC | 2 cut(s) | 199, 694 |
| LmnI | GCTCC | 1 cut(s) | 59 |
| LpnPI | CCDG | 2 cut(s) | 8, 498 |
| LweI | GCATC | 1 cut(s) | 348 |
| MaeI | CTAG | 1 cut(s) | 479 |
| MaeIII | GTNAC | 3 cut(s) | 410, 496, 776 |
| MalI | GATC | 2 cut(s) | 201, 696 |
| MboI | GATC | 2 cut(s) | 199, 694 |
| MboII | GAAGA | 8 cut(s) | 53, 56, 100, 270, 367, 455, 535, 747 |
| MflI | RGATCY | 1 cut(s) | 694 |
| MhlI | GDGCHC | 2 cut(s) | 157, 857 |
| MluCI | AATT | 5 cut(s) | 4, 83, 100, 266, 343 |
| MlyI | GAGTC | 2 cut(s) | 26, 838 |
| MmeI | TCCRAC | 5 cut(s) | 271, 372, 636, 672, 866 |
| MnlI | CCTC | 4 cut(s) | 101, 312, 397, 616 |
| MseI | TTAA | 3 cut(s) | 119, 705, 819 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 328 |
| NcoI | CCATGG | 1 cut(s) | 63 |
| NdeI | CATATG | 1 cut(s) | 205 |
| NdeII | GATC | 2 cut(s) | 199, 694 |
| NlaIII | CATG | 5 cut(s) | 14, 67, 143, 389, 589 |
| NlaIV | GGNNCC | 2 cut(s) | 61, 696 |
| NmuCI | GTSAC | 2 cut(s) | 410, 776 |
| NspI | RCATGY | 1 cut(s) | 389 |
| PfeI | GAWTC | 4 cut(s) | 68, 132, 599, 752 |
| PleI | GAGTC | 2 cut(s) | 25, 838 |
| PpsI | GAGTC | 2 cut(s) | 25, 838 |
| PshBI | ATTAAT | 1 cut(s) | 119 |
| Psp124BI | GAGCTC | 1 cut(s) | 857 |
| PspN4I | GGNNCC | 2 cut(s) | 61, 696 |
| PsuI | RGATCY | 1 cut(s) | 694 |
| RsaI | GTAC | 1 cut(s) | 370 |
| RsaNI | GTAC | 1 cut(s) | 369 |
| SacI | GAGCTC | 1 cut(s) | 857 |
| SaqAI | TTAA | 3 cut(s) | 119, 705, 819 |
| Sau3AI | GATC | 2 cut(s) | 199, 694 |
| SchI | GAGTC | 2 cut(s) | 26, 838 |
| SduI | GDGCHC | 2 cut(s) | 157, 857 |
| SetI | ASST | 5 cut(s) | 408, 555, 818, 839, 857 |
| SfaNI | GCATC | 1 cut(s) | 348 |
| SmlI | CTYRAG | 1 cut(s) | 861 |
| SmoI | CTYRAG | 1 cut(s) | 861 |
| Sse9I | AATT | 5 cut(s) | 4, 83, 100, 266, 343 |
| SspMI | CTAG | 1 cut(s) | 479 |
| SstI | GAGCTC | 1 cut(s) | 857 |
| StyI | CCWWGG | 2 cut(s) | 63, 478 |
| TaaI | ACNGT | 3 cut(s) | 368, 702, 762 |
| TasI | AATT | 5 cut(s) | 4, 83, 100, 266, 343 |
| TatI | WGTACW | 1 cut(s) | 368 |
| TfiI | GAWTC | 4 cut(s) | 68, 132, 599, 752 |
| Tru1I | TTAA | 3 cut(s) | 119, 705, 819 |
| Tru9I | TTAA | 3 cut(s) | 119, 705, 819 |
| TseFI | GTSAC | 2 cut(s) | 410, 776 |
| Tsp45I | GTSAC | 2 cut(s) | 410, 776 |
| TspDTI | ATGAA | 4 cut(s) | 17, 128, 602, 623 |
| VneI | GTGCAC | 1 cut(s) | 153 |
| VspI | ATTAAT | 1 cut(s) | 119 |
| XapI | RAATTY | 4 cut(s) | 4, 100, 266, 343 |
| XceI | RCATGY | 1 cut(s) | 389 |
| XmaJI | CCTAGG | 1 cut(s) | 478 |
| XspI | CTAG | 1 cut(s) | 479 |