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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 575 |
| AclWI | GGATC | 1 cut(s) | 580 |
| AcsI | RAATTY | 1 cut(s) | 577 |
| AgsI | TTSAA | 4 cut(s) | 110, 137, 250, 583 |
| AluBI | AGCT | 2 cut(s) | 229, 440 |
| AluI | AGCT | 2 cut(s) | 229, 440 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw26I | GTCTC | 1 cut(s) | 388 |
| Alw44I | GTGCAC | 1 cut(s) | 302 |
| AlwI | GGATC | 1 cut(s) | 580 |
| Ama87I | CYCGRG | 1 cut(s) | 264 |
| AoxI | GGCC | 3 cut(s) | 510, 515, 660 |
| ApaI | GGGCCC | 1 cut(s) | 664 |
| ApaLI | GTGCAC | 1 cut(s) | 302 |
| ApeKI | GCWGC | 4 cut(s) | 20, 23, 36, 149 |
| ApoI | RAATTY | 1 cut(s) | 577 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 218, 524 |
| AspS9I | GGNCC | 3 cut(s) | 515, 660, 661 |
| AsuC2I | CCSGG | 3 cut(s) | 514, 635, 659 |
| AsuHPI | GGTGA | 1 cut(s) | 214 |
| AvaI | CYCGRG | 1 cut(s) | 264 |
| BaeGI | GKGCMC | 2 cut(s) | 306, 664 |
| BanII | GRGCYC | 1 cut(s) | 664 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 4 cut(s) | 7, 10, 48, 161 |
| BccI | CCATC | 5 cut(s) | 103, 236, 247, 478, 603 |
| BcnI | CCSGG | 3 cut(s) | 514, 635, 659 |
| BcoDI | GTCTC | 1 cut(s) | 388 |
| BfaI | CTAG | 4 cut(s) | 401, 465, 609, 673 |
| BisI | GCNGC | 4 cut(s) | 21, 24, 37, 150 |
| BlsI | GCNGC | 4 cut(s) | 22, 25, 38, 151 |
| Bme1390I | CCNGG | 3 cut(s) | 514, 635, 659 |
| BmeT110I | CYCGRG | 1 cut(s) | 264 |
| BmgT120I | GGNCC | 3 cut(s) | 515, 660, 661 |
| BmiI | GGNNCC | 1 cut(s) | 662 |
| BmrFI | CCNGG | 3 cut(s) | 514, 635, 659 |
| BmsI | GCATC | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 2 cut(s) | 87, 114 |
| BpuMI | CCSGG | 3 cut(s) | 514, 635, 659 |
| Bse1I | ACTGG | 2 cut(s) | 34, 527 |
| BseMII | CTCAG | 1 cut(s) | 6 |
| BseNI | ACTGG | 2 cut(s) | 34, 527 |
| BseSI | GKGCMC | 2 cut(s) | 306, 664 |
| BseXI | GCAGC | 4 cut(s) | 7, 10, 48, 161 |
| BshFI | GGCC | 3 cut(s) | 512, 517, 662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiHKCI | CYCGRG | 1 cut(s) | 264 |
| BsiSI | CCGG | 3 cut(s) | 513, 634, 658 |
| BslFI | GGGAC | 2 cut(s) | 334, 351 |
| BsmAI | GTCTC | 1 cut(s) | 388 |
| BsmFI | GGGAC | 2 cut(s) | 334, 351 |
| BsnI | GGCC | 3 cut(s) | 512, 517, 662 |
| BsoBI | CYCGRG | 1 cut(s) | 264 |
| Bsp120I | GGGCCC | 1 cut(s) | 660 |
| Bsp1286I | GDGCHC | 2 cut(s) | 306, 664 |
| Bsp143I | GATC | 1 cut(s) | 585 |
| BspANI | GGCC | 3 cut(s) | 512, 517, 662 |
| BspCNI | CTCAG | 1 cut(s) | 7 |
| BspLI | GGNNCC | 1 cut(s) | 662 |
| BspPI | GGATC | 1 cut(s) | 580 |
| BsrI | ACTGG | 2 cut(s) | 34, 527 |
| BssMI | GATC | 1 cut(s) | 585 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDEI | CTNAG | 2 cut(s) | 15, 480 |
| BstKTI | GATC | 1 cut(s) | 588 |
| BstMAI | GTCTC | 1 cut(s) | 388 |
| BstMBI | GATC | 1 cut(s) | 585 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 470 |
| BstSCI | CCNGG | 3 cut(s) | 512, 633, 657 |
| BstSLI | GKGCMC | 2 cut(s) | 306, 664 |
| BstV1I | GCAGC | 4 cut(s) | 7, 10, 48, 161 |
| BstX2I | RGATCY | 1 cut(s) | 585 |
| BstYI | RGATCY | 1 cut(s) | 585 |
| BsuRI | GGCC | 3 cut(s) | 512, 517, 662 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| Cfr13I | GGNCC | 3 cut(s) | 515, 660, 661 |
| CviAII | CATG | 3 cut(s) | 210, 317, 331 |
| DdeI | CTNAG | 2 cut(s) | 15, 480 |
| DpnI | GATC | 1 cut(s) | 587 |
| DpnII | GATC | 1 cut(s) | 585 |
| Eco24I | GRGCYC | 1 cut(s) | 664 |
| Eco88I | CYCGRG | 1 cut(s) | 264 |
| EcoT38I | GRGCYC | 1 cut(s) | 664 |
| FaeI | CATG | 3 cut(s) | 213, 320, 334 |
| FaqI | GGGAC | 2 cut(s) | 334, 351 |
| FatI | CATG | 3 cut(s) | 209, 316, 330 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 24, 37, 150 |
| FriOI | GRGCYC | 1 cut(s) | 664 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 24, 37, 150 |
| FspBI | CTAG | 4 cut(s) | 401, 465, 609, 673 |
| GluI | GCNGC | 4 cut(s) | 21, 24, 37, 150 |
| HaeIII | GGCC | 3 cut(s) | 512, 517, 662 |
| HapII | CCGG | 3 cut(s) | 513, 634, 658 |
| Hin1II | CATG | 3 cut(s) | 213, 320, 334 |
| HincII | GTYRAC | 3 cut(s) | 10, 161, 506 |
| HindII | GTYRAC | 3 cut(s) | 10, 161, 506 |
| HindIII | AAGCTT | 1 cut(s) | 438 |
| HinfI | GANTC | 4 cut(s) | 214, 337, 410, 499 |
| HpaII | CCGG | 3 cut(s) | 513, 634, 658 |
| HphI | GGTGA | 1 cut(s) | 214 |
| Hpy166II | GTNNAC | 4 cut(s) | 10, 161, 304, 506 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 435 |
| Hpy188III | TCNNGA | 3 cut(s) | 239, 583, 653 |
| Hpy8I | GTNNAC | 4 cut(s) | 10, 161, 304, 506 |
| HpyCH4V | TGCA | 7 cut(s) | 26, 149, 304, 357, 428, 473, 539 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 470 |
| HpyF3I | CTNAG | 2 cut(s) | 15, 480 |
| Hsp92II | CATG | 3 cut(s) | 213, 320, 334 |
| Kzo9I | GATC | 1 cut(s) | 585 |
| Lsp1109I | GCAGC | 4 cut(s) | 7, 10, 48, 161 |
| LweI | GCATC | 1 cut(s) | 136 |
| MaeI | CTAG | 4 cut(s) | 401, 465, 609, 673 |
| MalI | GATC | 1 cut(s) | 587 |
| MboI | GATC | 1 cut(s) | 585 |
| MboII | GAAGA | 3 cut(s) | 262, 346, 467 |
| MflI | RGATCY | 1 cut(s) | 585 |
| MhlI | GDGCHC | 2 cut(s) | 306, 664 |
| MluCI | AATT | 4 cut(s) | 111, 277, 540, 577 |
| MlyI | GAGTC | 1 cut(s) | 508 |
| MnlI | CCTC | 6 cut(s) | 10, 102, 177, 273, 380, 653 |
| MroXI | GAANNNNTTC | 2 cut(s) | 218, 524 |
| MseI | TTAA | 2 cut(s) | 234, 450 |
| MspI | CCGG | 3 cut(s) | 513, 634, 658 |
| MspR9I | CCNGG | 3 cut(s) | 514, 635, 659 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 470 |
| NciI | CCSGG | 3 cut(s) | 514, 635, 659 |
| NdeII | GATC | 1 cut(s) | 585 |
| NlaIII | CATG | 3 cut(s) | 213, 320, 334 |
| NlaIV | GGNNCC | 1 cut(s) | 662 |
| PaeR7I | CTCGAG | 1 cut(s) | 264 |
| PdmI | GAANNNNTTC | 2 cut(s) | 218, 524 |
| PfeI | GAWTC | 3 cut(s) | 214, 337, 410 |
| PkrI | GCNGC | 4 cut(s) | 22, 25, 38, 151 |
| PleI | GAGTC | 1 cut(s) | 507 |
| PpsI | GAGTC | 1 cut(s) | 507 |
| PsiI | TTATAA | 1 cut(s) | 575 |
| PspN4I | GGNNCC | 1 cut(s) | 662 |
| PspOMI | GGGCCC | 1 cut(s) | 660 |
| PspPI | GGNCC | 3 cut(s) | 515, 660, 661 |
| PspXI | VCTCGAGB | 1 cut(s) | 264 |
| PsuI | RGATCY | 1 cut(s) | 585 |
| SaqAI | TTAA | 2 cut(s) | 234, 450 |
| SatI | GCNGC | 4 cut(s) | 21, 24, 37, 150 |
| Sau3AI | GATC | 1 cut(s) | 585 |
| Sau96I | GGNCC | 3 cut(s) | 515, 660, 661 |
| SchI | GAGTC | 1 cut(s) | 508 |
| ScrFI | CCNGG | 3 cut(s) | 514, 635, 659 |
| SduI | GDGCHC | 2 cut(s) | 306, 664 |
| SetI | ASST | 6 cut(s) | 94, 142, 231, 442, 610, 622 |
| SfaNI | GCATC | 1 cut(s) | 136 |
| Sfr274I | CTCGAG | 1 cut(s) | 264 |
| SlaI | CTCGAG | 1 cut(s) | 264 |
| SmlI | CTYRAG | 3 cut(s) | 102, 129, 264 |
| SmoI | CTYRAG | 3 cut(s) | 102, 129, 264 |
| Sse9I | AATT | 4 cut(s) | 111, 277, 540, 577 |
| SspMI | CTAG | 4 cut(s) | 401, 465, 609, 673 |
| StyD4I | CCNGG | 3 cut(s) | 512, 633, 657 |
| TaqI | TCGA | 2 cut(s) | 265, 308 |
| TasI | AATT | 4 cut(s) | 111, 277, 540, 577 |
| TfiI | GAWTC | 3 cut(s) | 214, 337, 410 |
| Tru1I | TTAA | 2 cut(s) | 234, 450 |
| Tru9I | TTAA | 2 cut(s) | 234, 450 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseI | GCWGC | 4 cut(s) | 20, 23, 36, 149 |
| TspDTI | ATGAA | 6 cut(s) | 69, 102, 347, 468, 517, 559 |
| TspRI | CASTG | 1 cut(s) | 19 |
| VneI | GTGCAC | 1 cut(s) | 302 |
| XapI | RAATTY | 1 cut(s) | 577 |
| XhoI | CTCGAG | 1 cut(s) | 264 |
| XmnI | GAANNNNTTC | 2 cut(s) | 218, 524 |
| XspI | CTAG | 4 cut(s) | 401, 465, 609, 673 |