Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 75 - 178 | 1e-16 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 139 |
| AciI | CCGC | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 372 |
| AcsI | RAATTY | 2 cut(s) | 291, 425 |
| AfaI | GTAC | 5 cut(s) | 408, 422, 565, 574, 621 |
| AgsI | TTSAA | 3 cut(s) | 19, 272, 374 |
| AhlI | ACTAGT | 2 cut(s) | 566, 575 |
| AluBI | AGCT | 2 cut(s) | 343, 457 |
| AluI | AGCT | 2 cut(s) | 343, 457 |
| Alw21I | GWGCWC | 1 cut(s) | 459 |
| Alw26I | GTCTC | 2 cut(s) | 94, 434 |
| AlwI | GGATC | 1 cut(s) | 372 |
| Aor13HI | TCCGGA | 1 cut(s) | 139 |
| AoxI | GGCC | 1 cut(s) | 45 |
| ApoI | RAATTY | 2 cut(s) | 291, 425 |
| AspA2I | CCTAGG | 1 cut(s) | 416 |
| AspS9I | GGNCC | 2 cut(s) | 134, 547 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 271, 391 |
| AvaII | GGWCC | 2 cut(s) | 134, 547 |
| AvrII | CCTAGG | 1 cut(s) | 416 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| Bbv12I | GWGCWC | 1 cut(s) | 459 |
| BccI | CCATC | 3 cut(s) | 37, 98, 462 |
| BcoDI | GTCTC | 2 cut(s) | 94, 434 |
| BcuI | ACTAGT | 2 cut(s) | 566, 575 |
| BfaI | CTAG | 5 cut(s) | 417, 449, 567, 576, 623 |
| BlnI | CCTAGG | 1 cut(s) | 416 |
| BmcAI | AGTACT | 3 cut(s) | 408, 565, 574 |
| Bme18I | GGWCC | 2 cut(s) | 134, 547 |
| BmgT120I | GGNCC | 2 cut(s) | 134, 547 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmsI | GCATC | 1 cut(s) | 190 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 44, 76, 160, 192 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BsaI | GGTCTC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 1 cut(s) | 416 |
| BsaWI | WCCGGW | 1 cut(s) | 139 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 214, 244 |
| BseAI | TCCGGA | 1 cut(s) | 139 |
| BseDI | CCNNGG | 1 cut(s) | 416 |
| BseGI | GGATG | 2 cut(s) | 154, 473 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BshFI | GGCC | 1 cut(s) | 47 |
| BsiHKAI | GWGCWC | 1 cut(s) | 459 |
| BsiSI | CCGG | 1 cut(s) | 140 |
| BslFI | GGGAC | 1 cut(s) | 485 |
| BsmAI | GTCTC | 2 cut(s) | 94, 434 |
| BsmFI | GGGAC | 1 cut(s) | 485 |
| BsnI | GGCC | 1 cut(s) | 47 |
| Bso31I | GGTCTC | 1 cut(s) | 94 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp13I | TCCGGA | 1 cut(s) | 139 |
| Bsp143I | GATC | 3 cut(s) | 364, 608, 643 |
| BspACI | CCGC | 1 cut(s) | 127 |
| BspANI | GGCC | 1 cut(s) | 47 |
| BspEI | TCCGGA | 1 cut(s) | 139 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BspPI | GGATC | 1 cut(s) | 372 |
| BspQI | GCTCTTC | 1 cut(s) | 447 |
| BspTNI | GGTCTC | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 416 |
| BssMI | GATC | 3 cut(s) | 364, 608, 643 |
| BssT1I | CCWWGG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| Bst6I | CTCTTC | 2 cut(s) | 78, 447 |
| BstDEI | CTNAG | 3 cut(s) | 39, 251, 551 |
| BstF5I | GGATG | 2 cut(s) | 154, 473 |
| BstKTI | GATC | 3 cut(s) | 367, 611, 646 |
| BstMAI | GTCTC | 2 cut(s) | 94, 434 |
| BstMBI | GATC | 3 cut(s) | 364, 608, 643 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 308 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 130 |
| BsuRI | GGCC | 1 cut(s) | 47 |
| BtsCI | GGATG | 2 cut(s) | 154, 473 |
| Cfr13I | GGNCC | 2 cut(s) | 134, 547 |
| Csp6I | GTAC | 5 cut(s) | 407, 421, 564, 573, 620 |
| CviJI | RGCY | 7 cut(s) | 47, 329, 343, 401, 457, 462, 507 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 329, 343, 401, 457, 462, 507 |
| CviQI | GTAC | 5 cut(s) | 407, 421, 564, 573, 620 |
| DdeI | CTNAG | 3 cut(s) | 39, 251, 551 |
| DpnI | GATC | 3 cut(s) | 366, 610, 645 |
| DpnII | GATC | 3 cut(s) | 364, 608, 643 |
| DraI | TTTAAA | 3 cut(s) | 25, 79, 297 |
| Eam1104I | CTCTTC | 2 cut(s) | 78, 447 |
| EarI | CTCTTC | 2 cut(s) | 78, 447 |
| Ecl136II | GAGCTC | 1 cut(s) | 457 |
| Eco130I | CCWWGG | 1 cut(s) | 416 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco31I | GGTCTC | 1 cut(s) | 94 |
| Eco47I | GGWCC | 2 cut(s) | 134, 547 |
| Eco53kI | GAGCTC | 1 cut(s) | 457 |
| EcoICRI | GAGCTC | 1 cut(s) | 457 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoT14I | CCWWGG | 1 cut(s) | 416 |
| EcoT22I | ATGCAT | 1 cut(s) | 532 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| ErhI | CCWWGG | 1 cut(s) | 416 |
| FaiI | YATR | 6 cut(s) | 198, 434, 465, 510, 525, 532 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 32, 64 |
| FaqI | GGGAC | 1 cut(s) | 485 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FokI | GGATG | 2 cut(s) | 161, 480 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| FspBI | CTAG | 5 cut(s) | 417, 449, 567, 576, 623 |
| HaeIII | GGCC | 1 cut(s) | 47 |
| HapII | CCGG | 1 cut(s) | 140 |
| HinfI | GANTC | 2 cut(s) | 59, 382 |
| HpaII | CCGG | 1 cut(s) | 140 |
| HphI | GGTGA | 3 cut(s) | 121, 271, 391 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 449 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| HpyCH4IV | ACGT | 1 cut(s) | 236 |
| HpyCH4V | TGCA | 3 cut(s) | 221, 319, 530 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 3 cut(s) | 39, 251, 551 |
| HpySE526I | ACGT | 1 cut(s) | 236 |
| Kpn2I | TCCGGA | 1 cut(s) | 139 |
| Kzo9I | GATC | 3 cut(s) | 364, 608, 643 |
| LguI | GCTCTTC | 1 cut(s) | 447 |
| LpnPI | CCDG | 1 cut(s) | 153 |
| LweI | GCATC | 1 cut(s) | 190 |
| MaeI | CTAG | 5 cut(s) | 417, 449, 567, 576, 623 |
| MaeII | ACGT | 1 cut(s) | 236 |
| MaeIII | GTNAC | 4 cut(s) | 56, 109, 237, 511 |
| MalI | GATC | 3 cut(s) | 366, 610, 645 |
| MboI | GATC | 3 cut(s) | 364, 608, 643 |
| MboII | GAAGA | 2 cut(s) | 95, 464 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| MluCI | AATT | 2 cut(s) | 291, 425 |
| MlyI | GAGTC | 1 cut(s) | 53 |
| MmeI | TCCRAC | 2 cut(s) | 257, 417 |
| MnlI | CCTC | 9 cut(s) | 79, 91, 136, 147, 313, 343, 478, 532, 601 |
| Mph1103I | ATGCAT | 1 cut(s) | 532 |
| MroI | TCCGGA | 1 cut(s) | 139 |
| MseI | TTAA | 7 cut(s) | 6, 24, 78, 186, 245, 296, 501 |
| MspI | CCGG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 308 |
| NdeII | GATC | 3 cut(s) | 364, 608, 643 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| NmeAIII | GCCGAG | 1 cut(s) | 438 |
| NmuCI | GTSAC | 3 cut(s) | 56, 109, 237 |
| NsiI | ATGCAT | 1 cut(s) | 532 |
| PciSI | GCTCTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 1 cut(s) | 382 |
| PleI | GAGTC | 1 cut(s) | 53 |
| PpsI | GAGTC | 1 cut(s) | 53 |
| PpuMI | RGGWCCY | 1 cut(s) | 134 |
| Psp124BI | GAGCTC | 1 cut(s) | 459 |
| Psp5II | RGGWCCY | 1 cut(s) | 134 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 2 cut(s) | 134, 547 |
| PspPPI | RGGWCCY | 1 cut(s) | 134 |
| RsaI | GTAC | 5 cut(s) | 408, 422, 565, 574, 621 |
| RsaNI | GTAC | 5 cut(s) | 407, 421, 564, 573, 620 |
| SacI | GAGCTC | 1 cut(s) | 459 |
| SapI | GCTCTTC | 1 cut(s) | 447 |
| SaqAI | TTAA | 7 cut(s) | 6, 24, 78, 186, 245, 296, 501 |
| Sau3AI | GATC | 3 cut(s) | 364, 608, 643 |
| Sau96I | GGNCC | 2 cut(s) | 134, 547 |
| ScaI | AGTACT | 3 cut(s) | 408, 565, 574 |
| SchI | GAGTC | 1 cut(s) | 53 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| SfaNI | GCATC | 1 cut(s) | 190 |
| SinI | GGWCC | 2 cut(s) | 134, 547 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| SpeI | ACTAGT | 2 cut(s) | 566, 575 |
| Sse9I | AATT | 2 cut(s) | 291, 425 |
| SsiI | CCGC | 1 cut(s) | 127 |
| SspI | AATATT | 1 cut(s) | 359 |
| SspMI | CTAG | 5 cut(s) | 417, 449, 567, 576, 623 |
| SstI | GAGCTC | 1 cut(s) | 459 |
| StyI | CCWWGG | 1 cut(s) | 416 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaiI | ACGT | 1 cut(s) | 239 |
| TaqI | TCGA | 2 cut(s) | 164, 411 |
| TasI | AATT | 2 cut(s) | 291, 425 |
| TatI | WGTACW | 4 cut(s) | 406, 563, 572, 619 |
| TfiI | GAWTC | 1 cut(s) | 382 |
| Tru1I | TTAA | 7 cut(s) | 6, 24, 78, 186, 245, 296, 501 |
| Tru9I | TTAA | 7 cut(s) | 6, 24, 78, 186, 245, 296, 501 |
| TseFI | GTSAC | 3 cut(s) | 56, 109, 237 |
| Tsp45I | GTSAC | 3 cut(s) | 56, 109, 237 |
| TspDTI | ATGAA | 1 cut(s) | 353 |
| VpaK11BI | GGWCC | 2 cut(s) | 134, 547 |
| XapI | RAATTY | 2 cut(s) | 291, 425 |
| XbaI | TCTAGA | 1 cut(s) | 448 |
| XmaJI | CCTAGG | 1 cut(s) | 416 |
| XspI | CTAG | 5 cut(s) | 417, 449, 567, 576, 623 |
| ZrmI | AGTACT | 3 cut(s) | 408, 565, 574 |
| Zsp2I | ATGCAT | 1 cut(s) | 532 |