Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 59, 1117 |
| AfaI | GTAC | 4 cut(s) | 470, 511, 616, 666 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 347, 867 |
| AflII | CTTAAG | 1 cut(s) | 101 |
| AflIII | ACRYGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 8 cut(s) | 516, 707, 823, 881, 1068, 1093, 1190, 1309 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 788 |
| AjnI | CCWGG | 1 cut(s) | 866 |
| AluBI | AGCT | 5 cut(s) | 458, 491, 968, 1226, 1277 |
| AluI | AGCT | 5 cut(s) | 458, 491, 968, 1226, 1277 |
| Alw21I | GWGCWC | 1 cut(s) | 1168 |
| Alw26I | GTCTC | 1 cut(s) | 775 |
| Ama87I | CYCGRG | 1 cut(s) | 559 |
| ApeKI | GCWGC | 2 cut(s) | 47, 488 |
| ApoI | RAATTY | 2 cut(s) | 59, 1117 |
| AspS9I | GGNCC | 2 cut(s) | 227, 429 |
| AsuC2I | CCSGG | 3 cut(s) | 225, 560, 561 |
| AsuHPI | GGTGA | 3 cut(s) | 231, 282, 300 |
| AvaI | CYCGRG | 1 cut(s) | 559 |
| AvaII | GGWCC | 2 cut(s) | 227, 429 |
| BbsI | GAAGAC | 3 cut(s) | 6, 1100, 1248 |
| Bbv12I | GWGCWC | 1 cut(s) | 1168 |
| BbvI | GCAGC | 2 cut(s) | 34, 500 |
| BccI | CCATC | 7 cut(s) | 244, 419, 599, 769, 1052, 1187, 1226 |
| BceAI | ACGGC | 2 cut(s) | 676, 921 |
| BciT130I | CCWGG | 1 cut(s) | 868 |
| BcnI | CCSGG | 3 cut(s) | 225, 560, 561 |
| BcoDI | GTCTC | 1 cut(s) | 775 |
| BfaI | CTAG | 4 cut(s) | 459, 572, 627, 1016 |
| BfmI | CTRYAG | 2 cut(s) | 352, 730 |
| BfrI | CTTAAG | 1 cut(s) | 101 |
| BisI | GCNGC | 2 cut(s) | 48, 489 |
| BlsI | GCNGC | 2 cut(s) | 49, 490 |
| BmcAI | AGTACT | 1 cut(s) | 470 |
| Bme1390I | CCNGG | 4 cut(s) | 225, 560, 561, 868 |
| Bme18I | GGWCC | 2 cut(s) | 227, 429 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 788 |
| BmeT110I | CYCGRG | 1 cut(s) | 559 |
| BmgT120I | GGNCC | 2 cut(s) | 227, 429 |
| BmiI | GGNNCC | 2 cut(s) | 228, 430 |
| BmrFI | CCNGG | 4 cut(s) | 225, 560, 561, 868 |
| BmsI | GCATC | 2 cut(s) | 98, 200 |
| BpiI | GAAGAC | 3 cut(s) | 6, 1100, 1248 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 837, 869 |
| BpuEI | CTTGAG | 3 cut(s) | 282, 1022, 1118 |
| BpuMI | CCSGG | 3 cut(s) | 225, 560, 561 |
| BsaJI | CCNNGG | 1 cut(s) | 559 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1243, 1273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 347, 867 |
| Bse3DI | GCAATG | 2 cut(s) | 95, 335 |
| BseBI | CCWGG | 1 cut(s) | 868 |
| BseDI | CCNNGG | 1 cut(s) | 559 |
| BseGI | GGATG | 2 cut(s) | 154, 430 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 347, 867 |
| BseMI | GCAATG | 2 cut(s) | 95, 335 |
| BseRI | GAGGAG | 1 cut(s) | 333 |
| BseXI | GCAGC | 2 cut(s) | 34, 500 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1053 |
| BsiEI | CGRYCG | 1 cut(s) | 1053 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 559 |
| BsiSI | CCGG | 3 cut(s) | 224, 422, 560 |
| BslFI | GGGAC | 1 cut(s) | 442 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 347, 867 |
| BsmAI | GTCTC | 1 cut(s) | 775 |
| BsmFI | GGGAC | 1 cut(s) | 442 |
| BsmI | GAATGC | 2 cut(s) | 1240, 1315 |
| BsoBI | CYCGRG | 1 cut(s) | 559 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1168 |
| BspLI | GGNNCC | 2 cut(s) | 228, 430 |
| BspTI | CTTAAG | 1 cut(s) | 101 |
| BsrDI | GCAATG | 2 cut(s) | 95, 335 |
| BssECI | CCNNGG | 1 cut(s) | 559 |
| Bst2UI | CCWGG | 1 cut(s) | 868 |
| Bst4CI | ACNGT | 6 cut(s) | 85, 119, 356, 373, 473, 1051 |
| BstAFI | CTTAAG | 1 cut(s) | 101 |
| BstDEI | CTNAG | 1 cut(s) | 1222 |
| BstF5I | GGATG | 2 cut(s) | 154, 430 |
| BstMAI | GTCTC | 1 cut(s) | 775 |
| BstMCI | CGRYCG | 1 cut(s) | 1053 |
| BstNI | CCWGG | 1 cut(s) | 868 |
| BstNSI | RCATGY | 3 cut(s) | 704, 1150, 1154 |
| BstSCI | CCNGG | 4 cut(s) | 223, 558, 559, 866 |
| BstSFI | CTRYAG | 2 cut(s) | 352, 730 |
| BstV1I | GCAGC | 2 cut(s) | 34, 500 |
| BstV2I | GAAGAC | 3 cut(s) | 6, 1100, 1248 |
| BtgZI | GCGATG | 1 cut(s) | 192 |
| BtsCI | GGATG | 2 cut(s) | 154, 430 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 2 cut(s) | 227, 429 |
| Cfr9I | CCCGGG | 1 cut(s) | 559 |
| Csp6I | GTAC | 4 cut(s) | 469, 510, 615, 665 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1056, 1091 |
| CviAII | CATG | 6 cut(s) | 171, 701, 796, 895, 1147, 1151 |
| CviQI | GTAC | 4 cut(s) | 469, 510, 615, 665 |
| DdeI | CTNAG | 1 cut(s) | 1222 |
| DraI | TTTAAA | 1 cut(s) | 64 |
| DriI | GACNNNNNGTC | 1 cut(s) | 788 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 788 |
| Eco47I | GGWCC | 2 cut(s) | 227, 429 |
| Eco88I | CYCGRG | 1 cut(s) | 559 |
| EcoRII | CCWGG | 1 cut(s) | 866 |
| EcoT22I | ATGCAT | 2 cut(s) | 1152, 1240 |
| FaeI | CATG | 6 cut(s) | 174, 704, 799, 898, 1150, 1154 |
| FaqI | GGGAC | 1 cut(s) | 442 |
| FatI | CATG | 6 cut(s) | 170, 700, 795, 894, 1146, 1150 |
| Fnu4HI | GCNGC | 2 cut(s) | 48, 489 |
| FokI | GGATG | 2 cut(s) | 161, 437 |
| Fsp4HI | GCNGC | 2 cut(s) | 48, 489 |
| FspBI | CTAG | 4 cut(s) | 459, 572, 627, 1016 |
| GluI | GCNGC | 2 cut(s) | 48, 489 |
| HapII | CCGG | 3 cut(s) | 224, 422, 560 |
| Hin1II | CATG | 6 cut(s) | 174, 704, 799, 898, 1150, 1154 |
| HincII | GTYRAC | 2 cut(s) | 369, 1177 |
| HindII | GTYRAC | 2 cut(s) | 369, 1177 |
| HindIII | AAGCTT | 1 cut(s) | 1275 |
| HpaI | GTTAAC | 1 cut(s) | 1177 |
| HpaII | CCGG | 3 cut(s) | 224, 422, 560 |
| HphI | GGTGA | 3 cut(s) | 231, 282, 300 |
| Hpy166II | GTNNAC | 4 cut(s) | 369, 696, 889, 1177 |
| Hpy188III | TCNNGA | 5 cut(s) | 501, 572, 1001, 1122, 1190 |
| Hpy8I | GTNNAC | 4 cut(s) | 369, 696, 889, 1177 |
| HpyAV | CCTTC | 5 cut(s) | 222, 444, 507, 701, 1291 |
| HpyCH4III | ACNGT | 6 cut(s) | 85, 119, 356, 373, 473, 1051 |
| HpyCH4IV | ACGT | 2 cut(s) | 1205, 1253 |
| HpyF3I | CTNAG | 1 cut(s) | 1222 |
| HpySE526I | ACGT | 2 cut(s) | 1205, 1253 |
| Hsp92II | CATG | 6 cut(s) | 174, 704, 799, 898, 1150, 1154 |
| KspAI | GTTAAC | 1 cut(s) | 1177 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| LpnPI | CCDG | 6 cut(s) | 237, 435, 486, 573, 853, 880 |
| Lsp1109I | GCAGC | 2 cut(s) | 34, 500 |
| LweI | GCATC | 2 cut(s) | 98, 200 |
| MaeI | CTAG | 4 cut(s) | 459, 572, 627, 1016 |
| MaeII | ACGT | 2 cut(s) | 1205, 1253 |
| MaeIII | GTNAC | 2 cut(s) | 554, 1249 |
| MboII | GAAGA | 7 cut(s) | 6, 174, 192, 555, 1056, 1105, 1248 |
| MhlI | GDGCHC | 1 cut(s) | 1168 |
| MluCI | AATT | 7 cut(s) | 59, 68, 444, 818, 925, 1117, 1304 |
| MmeI | TCCRAC | 2 cut(s) | 104, 254 |
| Mph1103I | ATGCAT | 2 cut(s) | 1152, 1240 |
| MseI | TTAA | 6 cut(s) | 63, 102, 108, 114, 1176, 1293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1149 |
| MspCI | CTTAAG | 1 cut(s) | 101 |
| MspI | CCGG | 3 cut(s) | 224, 422, 560 |
| MspR9I | CCNGG | 4 cut(s) | 225, 560, 561, 868 |
| Mva1269I | GAATGC | 2 cut(s) | 1240, 1315 |
| MvaI | CCWGG | 1 cut(s) | 868 |
| NciI | CCSGG | 3 cut(s) | 225, 560, 561 |
| NlaIII | CATG | 6 cut(s) | 174, 704, 799, 898, 1150, 1154 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 430 |
| NsiI | ATGCAT | 2 cut(s) | 1152, 1240 |
| NspI | RCATGY | 3 cut(s) | 704, 1150, 1154 |
| PciI | ACATGT | 1 cut(s) | 700 |
| PctI | GAATGC | 2 cut(s) | 1240, 1315 |
| PflFI | GACNNNGTC | 1 cut(s) | 592 |
| PkrI | GCNGC | 2 cut(s) | 49, 490 |
| PscI | ACATGT | 1 cut(s) | 700 |
| Psp6I | CCWGG | 1 cut(s) | 866 |
| PspGI | CCWGG | 1 cut(s) | 866 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 430 |
| PspPI | GGNCC | 2 cut(s) | 227, 429 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 457, 489 |
| PsyI | GACNNNGTC | 1 cut(s) | 592 |
| RsaI | GTAC | 4 cut(s) | 470, 511, 616, 666 |
| RsaNI | GTAC | 4 cut(s) | 469, 510, 615, 665 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1149 |
| SaqAI | TTAA | 6 cut(s) | 63, 102, 108, 114, 1176, 1293 |
| SatI | GCNGC | 2 cut(s) | 48, 489 |
| Sau96I | GGNCC | 2 cut(s) | 227, 429 |
| ScaI | AGTACT | 1 cut(s) | 470 |
| ScrFI | CCNGG | 4 cut(s) | 225, 560, 561, 868 |
| SduI | GDGCHC | 1 cut(s) | 1168 |
| SfaNI | GCATC | 2 cut(s) | 98, 200 |
| SfcI | CTRYAG | 2 cut(s) | 352, 730 |
| SinI | GGWCC | 2 cut(s) | 227, 429 |
| SmaI | CCCGGG | 1 cut(s) | 561 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1149 |
| SmlI | CTYRAG | 4 cut(s) | 101, 297, 1001, 1133 |
| SmoI | CTYRAG | 4 cut(s) | 101, 297, 1001, 1133 |
| Sse9I | AATT | 7 cut(s) | 59, 68, 444, 818, 925, 1117, 1304 |
| SspMI | CTAG | 4 cut(s) | 459, 572, 627, 1016 |
| StyD4I | CCNGG | 4 cut(s) | 223, 558, 559, 866 |
| TaaI | ACNGT | 6 cut(s) | 85, 119, 356, 373, 473, 1051 |
| TaiI | ACGT | 2 cut(s) | 1208, 1256 |
| TaqI | TCGA | 1 cut(s) | 1053 |
| TasI | AATT | 7 cut(s) | 59, 68, 444, 818, 925, 1117, 1304 |
| TatI | WGTACW | 1 cut(s) | 468 |
| Tru1I | TTAA | 6 cut(s) | 63, 102, 108, 114, 1176, 1293 |
| Tru9I | TTAA | 6 cut(s) | 63, 102, 108, 114, 1176, 1293 |
| TscAI | CASTG | 1 cut(s) | 378 |
| TseI | GCWGC | 2 cut(s) | 47, 488 |
| TspDTI | ATGAA | 6 cut(s) | 6, 192, 414, 819, 824, 904 |
| TspMI | CCCGGG | 1 cut(s) | 559 |
| TspRI | CASTG | 1 cut(s) | 378 |
| Tth111I | GACNNNGTC | 1 cut(s) | 592 |
| Vha464I | CTTAAG | 1 cut(s) | 101 |
| VpaK11BI | GGWCC | 2 cut(s) | 227, 429 |
| XapI | RAATTY | 2 cut(s) | 59, 1117 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XceI | RCATGY | 3 cut(s) | 704, 1150, 1154 |
| XmaI | CCCGGG | 1 cut(s) | 559 |
| XspI | CTAG | 4 cut(s) | 459, 572, 627, 1016 |
| ZrmI | AGTACT | 1 cut(s) | 470 |
| Zsp2I | ATGCAT | 2 cut(s) | 1152, 1240 |