Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 88 - 133 | 7.7e-10 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 220 |
| AclWI | GGATC | 1 cut(s) | 209 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AgsI | TTSAA | 1 cut(s) | 329 |
| AjiI | CACGTC | 1 cut(s) | 79 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 259, 291 |
| AluBI | AGCT | 1 cut(s) | 65 |
| AluI | AGCT | 1 cut(s) | 65 |
| Alw21I | GWGCWC | 1 cut(s) | 124 |
| Alw26I | GTCTC | 1 cut(s) | 355 |
| Alw44I | GTGCAC | 1 cut(s) | 120 |
| AlwI | GGATC | 1 cut(s) | 209 |
| Ama87I | CYCGRG | 1 cut(s) | 220 |
| ApaLI | GTGCAC | 1 cut(s) | 120 |
| AspA2I | CCTAGG | 1 cut(s) | 229 |
| AsuII | TTCGAA | 1 cut(s) | 284 |
| AvaI | CYCGRG | 1 cut(s) | 220 |
| AvrII | CCTAGG | 1 cut(s) | 229 |
| BaeGI | GKGCMC | 1 cut(s) | 124 |
| Bbv12I | GWGCWC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BciVI | GTATCC | 1 cut(s) | 285 |
| BclI | TGATCA | 2 cut(s) | 34, 144 |
| BcoDI | GTCTC | 1 cut(s) | 355 |
| BfaI | CTAG | 3 cut(s) | 113, 230, 412 |
| BfuI | GTATCC | 1 cut(s) | 285 |
| BlnI | CCTAGG | 1 cut(s) | 229 |
| BmcAI | AGTACT | 1 cut(s) | 410 |
| BmeT110I | CYCGRG | 1 cut(s) | 220 |
| BmgBI | CACGTC | 1 cut(s) | 79 |
| BmiI | GGNNCC | 2 cut(s) | 227, 268 |
| BmsI | GCATC | 1 cut(s) | 340 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 203, 235 |
| Bpu14I | TTCGAA | 1 cut(s) | 284 |
| BpuEI | CTTGAG | 2 cut(s) | 284, 371 |
| BsaJI | CCNNGG | 1 cut(s) | 229 |
| BseDI | CCNNGG | 1 cut(s) | 229 |
| BseSI | GKGCMC | 1 cut(s) | 124 |
| BsiHKAI | GWGCWC | 1 cut(s) | 124 |
| BsiHKCI | CYCGRG | 1 cut(s) | 220 |
| BsmAI | GTCTC | 1 cut(s) | 355 |
| BsmI | GAATGC | 1 cut(s) | 353 |
| BsoBI | CYCGRG | 1 cut(s) | 220 |
| Bsp119I | TTCGAA | 1 cut(s) | 284 |
| Bsp1286I | GDGCHC | 1 cut(s) | 124 |
| Bsp143I | GATC | 3 cut(s) | 34, 144, 201 |
| BspHI | TCATGA | 1 cut(s) | 357 |
| BspLI | GGNNCC | 2 cut(s) | 227, 268 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BspT104I | TTCGAA | 1 cut(s) | 284 |
| BssECI | CCNNGG | 1 cut(s) | 229 |
| BssMI | GATC | 3 cut(s) | 34, 144, 201 |
| BssT1I | CCWWGG | 1 cut(s) | 229 |
| Bst4CI | ACNGT | 1 cut(s) | 408 |
| Bst6I | CTCTTC | 1 cut(s) | 131 |
| BstBI | TTCGAA | 1 cut(s) | 284 |
| BstKTI | GATC | 3 cut(s) | 37, 147, 204 |
| BstMAI | GTCTC | 1 cut(s) | 355 |
| BstMBI | GATC | 3 cut(s) | 34, 144, 201 |
| BstSLI | GKGCMC | 1 cut(s) | 124 |
| BsuI | GTATCC | 1 cut(s) | 285 |
| BtrI | CACGTC | 1 cut(s) | 79 |
| CciI | TCATGA | 1 cut(s) | 357 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CviAII | CATG | 3 cut(s) | 337, 358, 379 |
| CviJI | RGCY | 3 cut(s) | 27, 65, 335 |
| CviKI_1 | RGCY | 3 cut(s) | 27, 65, 335 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DpnI | GATC | 3 cut(s) | 36, 146, 203 |
| DpnII | GATC | 3 cut(s) | 34, 144, 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 131 |
| EarI | CTCTTC | 1 cut(s) | 131 |
| Eco130I | CCWWGG | 1 cut(s) | 229 |
| Eco88I | CYCGRG | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 1 cut(s) | 229 |
| EcoT22I | ATGCAT | 1 cut(s) | 355 |
| ErhI | CCWWGG | 1 cut(s) | 229 |
| FaeI | CATG | 3 cut(s) | 340, 361, 382 |
| FaiI | YATR | 7 cut(s) | 110, 160, 243, 311, 338, 359, 380 |
| FatI | CATG | 3 cut(s) | 336, 357, 378 |
| FbaI | TGATCA | 2 cut(s) | 34, 144 |
| FspBI | CTAG | 3 cut(s) | 113, 230, 412 |
| Hin1II | CATG | 3 cut(s) | 340, 361, 382 |
| HinfI | GANTC | 1 cut(s) | 313 |
| Hpy166II | GTNNAC | 1 cut(s) | 122 |
| Hpy188III | TCNNGA | 2 cut(s) | 264, 358 |
| Hpy8I | GTNNAC | 1 cut(s) | 122 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 1 cut(s) | 408 |
| HpyCH4IV | ACGT | 1 cut(s) | 78 |
| HpyCH4V | TGCA | 3 cut(s) | 122, 155, 353 |
| HpySE526I | ACGT | 1 cut(s) | 78 |
| Hsp92II | CATG | 3 cut(s) | 340, 361, 382 |
| Ksp22I | TGATCA | 2 cut(s) | 34, 144 |
| Kzo9I | GATC | 3 cut(s) | 34, 144, 201 |
| LpnPI | CCDG | 1 cut(s) | 249 |
| LweI | GCATC | 1 cut(s) | 340 |
| MaeI | CTAG | 3 cut(s) | 113, 230, 412 |
| MaeII | ACGT | 1 cut(s) | 78 |
| MaeIII | GTNAC | 2 cut(s) | 161, 247 |
| MalI | GATC | 3 cut(s) | 36, 146, 203 |
| MboI | GATC | 3 cut(s) | 34, 144, 201 |
| MboII | GAAGA | 1 cut(s) | 118 |
| MhlI | GDGCHC | 1 cut(s) | 124 |
| MmeI | TCCRAC | 2 cut(s) | 22, 302 |
| MnlI | CCTC | 5 cut(s) | 44, 216, 229, 308, 395 |
| Mph1103I | ATGCAT | 1 cut(s) | 355 |
| MseI | TTAA | 1 cut(s) | 174 |
| Mva1269I | GAATGC | 1 cut(s) | 353 |
| NdeII | GATC | 3 cut(s) | 34, 144, 201 |
| NlaIII | CATG | 3 cut(s) | 340, 361, 382 |
| NlaIV | GGNNCC | 2 cut(s) | 227, 268 |
| NmuCI | GTSAC | 2 cut(s) | 161, 247 |
| NsiI | ATGCAT | 1 cut(s) | 355 |
| NspV | TTCGAA | 1 cut(s) | 284 |
| PaeR7I | CTCGAG | 1 cut(s) | 220 |
| PagI | TCATGA | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 353 |
| PfeI | GAWTC | 1 cut(s) | 313 |
| PspN4I | GGNNCC | 2 cut(s) | 227, 268 |
| PspXI | VCTCGAGB | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| Sau3AI | GATC | 3 cut(s) | 34, 144, 201 |
| ScaI | AGTACT | 1 cut(s) | 410 |
| SduI | GDGCHC | 1 cut(s) | 124 |
| SetI | ASST | 9 cut(s) | 55, 67, 81, 104, 210, 221, 227, 306, 387 |
| SfaNI | GCATC | 1 cut(s) | 340 |
| Sfr274I | CTCGAG | 1 cut(s) | 220 |
| SfuI | TTCGAA | 1 cut(s) | 284 |
| SlaI | CTCGAG | 1 cut(s) | 220 |
| SmlI | CTYRAG | 3 cut(s) | 220, 299, 386 |
| SmoI | CTYRAG | 3 cut(s) | 220, 299, 386 |
| SspMI | CTAG | 3 cut(s) | 113, 230, 412 |
| StyI | CCWWGG | 1 cut(s) | 229 |
| TaaI | ACNGT | 1 cut(s) | 408 |
| TaiI | ACGT | 1 cut(s) | 81 |
| TaqI | TCGA | 2 cut(s) | 221, 284 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TfiI | GAWTC | 1 cut(s) | 313 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TseFI | GTSAC | 2 cut(s) | 161, 247 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 247 |
| TspDTI | ATGAA | 4 cut(s) | 210, 346, 353, 395 |
| VneI | GTGCAC | 1 cut(s) | 120 |
| XhoI | CTCGAG | 1 cut(s) | 220 |
| XmaJI | CCTAGG | 1 cut(s) | 229 |
| XspI | CTAG | 3 cut(s) | 113, 230, 412 |
| ZrmI | AGTACT | 1 cut(s) | 410 |
| Zsp2I | ATGCAT | 1 cut(s) | 355 |