BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 10 - 91 | 1.6e-17 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 102 |
| AclWI | GGATC | 2 cut(s) | 31, 42 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 20, 270 |
| AgsI | TTSAA | 1 cut(s) | 197 |
| AjnI | CCWGG | 2 cut(s) | 235, 240 |
| AluBI | AGCT | 2 cut(s) | 53, 107 |
| AluI | AGCT | 2 cut(s) | 53, 107 |
| Alw26I | GTCTC | 1 cut(s) | 135 |
| AlwI | GGATC | 2 cut(s) | 31, 42 |
| AoxI | GGCC | 3 cut(s) | 150, 203, 238 |
| ApeKI | GCWGC | 2 cut(s) | 104, 107 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| BalI | TGGCCA | 1 cut(s) | 152 |
| BauI | CACGAG | 1 cut(s) | 138 |
| BbvI | GCAGC | 2 cut(s) | 94, 116 |
| BccI | CCATC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 2 cut(s) | 237, 242 |
| BciVI | GTATCC | 1 cut(s) | 126 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BcoDI | GTCTC | 1 cut(s) | 135 |
| BfuI | GTATCC | 1 cut(s) | 126 |
| BisI | GCNGC | 2 cut(s) | 105, 108 |
| BlsI | GCNGC | 2 cut(s) | 106, 109 |
| Bme1390I | CCNGG | 3 cut(s) | 112, 237, 242 |
| BmiI | GGNNCC | 1 cut(s) | 234 |
| BmrFI | CCNGG | 3 cut(s) | 112, 237, 242 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 2 cut(s) | 62, 200 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 39, 58, 69, 88 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 20, 270 |
| BseBI | CCWGG | 2 cut(s) | 237, 242 |
| BseDI | CCNNGG | 2 cut(s) | 62, 200 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 20, 270 |
| BseXI | GCAGC | 2 cut(s) | 94, 116 |
| Bsh1285I | CGRYCG | 1 cut(s) | 269 |
| BshFI | GGCC | 3 cut(s) | 152, 205, 240 |
| BsiEI | CGRYCG | 1 cut(s) | 269 |
| BsiSI | CCGG | 1 cut(s) | 112 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 20, 270 |
| BsmAI | GTCTC | 1 cut(s) | 135 |
| BsmI | GAATGC | 1 cut(s) | 185 |
| BsnI | GGCC | 3 cut(s) | 152, 205, 240 |
| Bsp143I | GATC | 3 cut(s) | 23, 34, 266 |
| BspACI | CCGC | 1 cut(s) | 102 |
| BspANI | GGCC | 3 cut(s) | 152, 205, 240 |
| BspLI | GGNNCC | 1 cut(s) | 234 |
| BspPI | GGATC | 2 cut(s) | 31, 42 |
| BssECI | CCNNGG | 2 cut(s) | 62, 200 |
| BssMI | GATC | 3 cut(s) | 23, 34, 266 |
| BssSI | CACGAG | 1 cut(s) | 138 |
| BssT1I | CCWWGG | 2 cut(s) | 62, 200 |
| Bst2BI | CACGAG | 1 cut(s) | 138 |
| Bst2UI | CCWGG | 2 cut(s) | 237, 242 |
| BstC8I | GCNNGC | 1 cut(s) | 207 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 18 |
| BstKTI | GATC | 3 cut(s) | 26, 37, 269 |
| BstMAI | GTCTC | 1 cut(s) | 135 |
| BstMBI | GATC | 3 cut(s) | 23, 34, 266 |
| BstMCI | CGRYCG | 1 cut(s) | 269 |
| BstNI | CCWGG | 2 cut(s) | 237, 242 |
| BstSCI | CCNGG | 3 cut(s) | 110, 235, 240 |
| BstV1I | GCAGC | 2 cut(s) | 94, 116 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| BsuI | GTATCC | 1 cut(s) | 126 |
| BsuRI | GGCC | 3 cut(s) | 152, 205, 240 |
| BtsI | GCAGTG | 1 cut(s) | 78 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 1 cut(s) | 207 |
| DpnI | GATC | 3 cut(s) | 25, 36, 268 |
| DpnII | GATC | 3 cut(s) | 23, 34, 266 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| Eco130I | CCWWGG | 2 cut(s) | 62, 200 |
| Eco147I | AGGCCT | 1 cut(s) | 240 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 18 |
| EcoRII | CCWGG | 2 cut(s) | 235, 240 |
| EcoT14I | CCWWGG | 2 cut(s) | 62, 200 |
| ErhI | CCWWGG | 2 cut(s) | 62, 200 |
| FaiI | YATR | 2 cut(s) | 178, 180 |
| FauNDI | CATATG | 1 cut(s) | 178 |
| Fnu4HI | GCNGC | 2 cut(s) | 105, 108 |
| Fsp4HI | GCNGC | 2 cut(s) | 105, 108 |
| GluI | GCNGC | 2 cut(s) | 105, 108 |
| HaeIII | GGCC | 3 cut(s) | 152, 205, 240 |
| HapII | CCGG | 1 cut(s) | 112 |
| HinfI | GANTC | 1 cut(s) | 67 |
| HpaII | CCGG | 1 cut(s) | 112 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 72 |
| HpyAV | CCTTC | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 3 cut(s) | 78, 83, 170 |
| Kzo9I | GATC | 3 cut(s) | 23, 34, 266 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 6 cut(s) | 125, 219, 222, 227, 249, 254 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 116 |
| MalI | GATC | 3 cut(s) | 25, 36, 268 |
| MboI | GATC | 3 cut(s) | 23, 34, 266 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MlsI | TGGCCA | 1 cut(s) | 152 |
| MluCI | AATT | 1 cut(s) | 217 |
| MluNI | TGGCCA | 1 cut(s) | 152 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MnlI | CCTC | 2 cut(s) | 175, 264 |
| Mox20I | TGGCCA | 1 cut(s) | 152 |
| MscI | TGGCCA | 1 cut(s) | 152 |
| Msp20I | TGGCCA | 1 cut(s) | 152 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspI | CCGG | 1 cut(s) | 112 |
| MspR9I | CCNGG | 3 cut(s) | 112, 237, 242 |
| Mva1269I | GAATGC | 1 cut(s) | 185 |
| MvaI | CCWGG | 2 cut(s) | 237, 242 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NdeI | CATATG | 1 cut(s) | 178 |
| NdeII | GATC | 3 cut(s) | 23, 34, 266 |
| NlaIV | GGNNCC | 1 cut(s) | 234 |
| PceI | AGGCCT | 1 cut(s) | 240 |
| PctI | GAATGC | 1 cut(s) | 185 |
| PkrI | GCNGC | 2 cut(s) | 106, 109 |
| Ple19I | CGATCG | 1 cut(s) | 269 |
| PleI | GAGTC | 1 cut(s) | 75 |
| PpsI | GAGTC | 1 cut(s) | 75 |
| Psp6I | CCWGG | 2 cut(s) | 235, 240 |
| PspGI | CCWGG | 2 cut(s) | 235, 240 |
| PspN4I | GGNNCC | 1 cut(s) | 234 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| PvuI | CGATCG | 1 cut(s) | 269 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| SatI | GCNGC | 2 cut(s) | 105, 108 |
| Sau3AI | GATC | 3 cut(s) | 23, 34, 266 |
| SchI | GAGTC | 1 cut(s) | 76 |
| ScrFI | CCNGG | 3 cut(s) | 112, 237, 242 |
| SetI | ASST | 2 cut(s) | 55, 109 |
| Sse9I | AATT | 1 cut(s) | 217 |
| SseBI | AGGCCT | 1 cut(s) | 240 |
| SsiI | CCGC | 1 cut(s) | 102 |
| StuI | AGGCCT | 1 cut(s) | 240 |
| StyD4I | CCNGG | 3 cut(s) | 110, 235, 240 |
| StyI | CCWWGG | 2 cut(s) | 62, 200 |
| TaqI | TCGA | 1 cut(s) | 269 |
| TasI | AATT | 1 cut(s) | 217 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TseI | GCWGC | 2 cut(s) | 104, 107 |
| TspDTI | ATGAA | 2 cut(s) | 17, 165 |
| TspRI | CASTG | 1 cut(s) | 85 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 18 |
| XapI | RAATTY | 1 cut(s) | 217 |