BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1657 |
| Acc65I | GGTACC | 1 cut(s) | 863 |
| AccB1I | GGYRCC | 1 cut(s) | 863 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2613 |
| AccBSI | CCGCTC | 1 cut(s) | 32 |
| AccII | CGCG | 1 cut(s) | 2639 |
| AciI | CCGC | 7 cut(s) | 30, 366, 390, 860, 1342, 2087, 2292 |
| AclWI | GGATC | 9 cut(s) | 1025, 1811, 1997, 2010, 2093, 2106, 2385, 2562, 2635 |
| AcsI | RAATTY | 2 cut(s) | 1489, 2190 |
| AcuI | CTGAAG | 3 cut(s) | 36, 348, 372 |
| AdeI | CACNNNGTG | 1 cut(s) | 1472 |
| AfaI | GTAC | 8 cut(s) | 417, 844, 865, 1567, 1626, 2336, 2459, 2561 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 625, 1093, 1258, 1843, 2077, 2613 |
| AflII | CTTAAG | 1 cut(s) | 1685 |
| AflIII | ACRYGT | 4 cut(s) | 1243, 1263, 2331, 2637 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2491 |
| AjiI | CACGTC | 1 cut(s) | 1244 |
| AjnI | CCWGG | 7 cut(s) | 489, 790, 1105, 1217, 1237, 2070, 2102 |
| AleI | CACNNNNGTG | 3 cut(s) | 59, 83, 131 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2090, 2122 |
| Alw21I | GWGCWC | 8 cut(s) | 288, 312, 336, 360, 384, 432, 456, 2202 |
| Alw26I | GTCTC | 6 cut(s) | 14, 1469, 1859, 2339, 2400, 2576 |
| AlwI | GGATC | 9 cut(s) | 1025, 1811, 1997, 2010, 2093, 2106, 2385, 2562, 2635 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1379, 1468 |
| Ama87I | CYCGRG | 1 cut(s) | 2406 |
| ApeKI | GCWGC | 7 cut(s) | 557, 810, 969, 1345, 1575, 1901, 2016 |
| ApoI | RAATTY | 2 cut(s) | 1489, 2190 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2209, 2241, 2513, 2545 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1674 |
| Asp718I | GGTACC | 1 cut(s) | 863 |
| AspLEI | GCGC | 1 cut(s) | 738 |
| AspS9I | GGNCC | 1 cut(s) | 627 |
| AsuC2I | CCSGG | 1 cut(s) | 227 |
| AsuHPI | GGTGA | 3 cut(s) | 763, 1165, 1207 |
| AvaI | CYCGRG | 1 cut(s) | 2406 |
| BaeGI | GKGCMC | 1 cut(s) | 1311 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 399, 432, 2526, 2559 |
| BalI | TGGCCA | 3 cut(s) | 53, 221, 269 |
| BamHI | GGATCC | 2 cut(s) | 2002, 2098 |
| BanI | GGYRCC | 1 cut(s) | 863 |
| BanII | GRGCYC | 1 cut(s) | 2202 |
| BauI | CACGAG | 1 cut(s) | 2481 |
| BbsI | GAAGAC | 5 cut(s) | 552, 648, 930, 1655, 1854 |
| Bbv12I | GWGCWC | 8 cut(s) | 288, 312, 336, 360, 384, 432, 456, 2202 |
| BbvI | GCAGC | 7 cut(s) | 544, 797, 981, 1332, 1587, 1913, 2028 |
| BciT130I | CCWGG | 7 cut(s) | 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BciVI | GTATCC | 1 cut(s) | 1801 |
| BclI | TGATCA | 2 cut(s) | 1065, 1459 |
| BcnI | CCSGG | 1 cut(s) | 227 |
| BcoDI | GTCTC | 6 cut(s) | 14, 1469, 1859, 2339, 2400, 2576 |
| BfmI | CTRYAG | 1 cut(s) | 2508 |
| BfrI | CTTAAG | 1 cut(s) | 1685 |
| BfuI | GTATCC | 1 cut(s) | 1801 |
| BglII | AGATCT | 1 cut(s) | 1975 |
| Bme1390I | CCNGG | 8 cut(s) | 227, 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2491 |
| BmeT110I | CYCGRG | 1 cut(s) | 2406 |
| BmgBI | CACGTC | 1 cut(s) | 1244 |
| BmgT120I | GGNCC | 1 cut(s) | 627 |
| BmiI | GGNNCC | 6 cut(s) | 247, 865, 1365, 1718, 2004, 2100 |
| BmrFI | CCNGG | 8 cut(s) | 227, 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BmrI | ACTGGG | 2 cut(s) | 245, 1314 |
| BmsI | GCATC | 5 cut(s) | 663, 1111, 1309, 1888, 2607 |
| BmuI | ACTGGG | 2 cut(s) | 245, 1314 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1041 |
| BpiI | GAAGAC | 5 cut(s) | 552, 648, 930, 1655, 1854 |
| BpmI | CTGGAG | 2 cut(s) | 1700, 1920 |
| BpuMI | CCSGG | 1 cut(s) | 227 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1067 |
| BsaWI | WCCGGW | 2 cut(s) | 999, 2500 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 670, 700, 1167, 1197, 1918, 1948 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 625, 1093, 1258, 1843, 2077, 2613 |
| Bse1I | ACTGG | 7 cut(s) | 251, 1309, 1331, 1856, 1937, 2060, 2618 |
| Bse3DI | GCAATG | 4 cut(s) | 885, 1552, 1557, 1578 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1067 |
| BseBI | CCWGG | 7 cut(s) | 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BseGI | GGATG | 6 cut(s) | 102, 800, 1068, 1102, 1908, 2622 |
| BseJI | GATNNNNATC | 1 cut(s) | 1067 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 625, 1093, 1258, 1843, 2077, 2613 |
| BseMI | GCAATG | 4 cut(s) | 885, 1552, 1557, 1578 |
| BseMII | CTCAG | 2 cut(s) | 1292, 1460 |
| BseNI | ACTGG | 7 cut(s) | 251, 1309, 1331, 1856, 1937, 2060, 2618 |
| BseSI | GKGCMC | 1 cut(s) | 1311 |
| BseX3I | CGGCCG | 3 cut(s) | 363, 387, 411 |
| BseXI | GCAGC | 7 cut(s) | 544, 797, 981, 1332, 1587, 1913, 2028 |
| BseYI | CCCAGC | 4 cut(s) | 322, 346, 904, 952 |
| BsgI | GTGCAG | 2 cut(s) | 1858, 2631 |
| Bsh1236I | CGCG | 1 cut(s) | 2639 |
| Bsh1285I | CGRYCG | 4 cut(s) | 294, 366, 390, 414 |
| BshNI | GGYRCC | 1 cut(s) | 863 |
| BsiEI | CGRYCG | 4 cut(s) | 294, 366, 390, 414 |
| BsiHKAI | GWGCWC | 8 cut(s) | 288, 312, 336, 360, 384, 432, 456, 2202 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2406 |
| BsiSI | CCGG | 3 cut(s) | 227, 1000, 2501 |
| BslFI | GGGAC | 3 cut(s) | 910, 1645, 1688 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 625, 1093, 1258, 1843, 2077, 2613 |
| BsmAI | GTCTC | 6 cut(s) | 14, 1469, 1859, 2339, 2400, 2576 |
| BsmBI | CGTCTC | 1 cut(s) | 2576 |
| BsmFI | GGGAC | 3 cut(s) | 910, 1645, 1688 |
| BsoBI | CYCGRG | 1 cut(s) | 2406 |
| Bsp1286I | GDGCHC | 9 cut(s) | 288, 312, 336, 360, 384, 432, 456, 1311, 2202 |
| Bsp1407I | TGTACA | 1 cut(s) | 2334 |
| Bsp19I | CCATGG | 1 cut(s) | 264 |
| BspACI | CCGC | 7 cut(s) | 30, 366, 390, 860, 1342, 2087, 2292 |
| BspCNI | CTCAG | 2 cut(s) | 1291, 1461 |
| BspFNI | CGCG | 1 cut(s) | 2639 |
| BspHI | TCATGA | 4 cut(s) | 1417, 2194, 2206, 2413 |
| BspLI | GGNNCC | 6 cut(s) | 247, 865, 1365, 1718, 2004, 2100 |
| BspPI | GGATC | 9 cut(s) | 1025, 1811, 1997, 2010, 2093, 2106, 2385, 2562, 2635 |
| BspT107I | GGYRCC | 1 cut(s) | 863 |
| BspTI | CTTAAG | 1 cut(s) | 1685 |
| BsrBI | CCGCTC | 1 cut(s) | 32 |
| BsrDI | GCAATG | 4 cut(s) | 885, 1552, 1557, 1578 |
| BsrGI | TGTACA | 1 cut(s) | 2334 |
| BsrI | ACTGG | 7 cut(s) | 251, 1309, 1331, 1856, 1937, 2060, 2618 |
| BssSI | CACGAG | 1 cut(s) | 2481 |
| BssT1I | CCWWGG | 3 cut(s) | 264, 2287, 2607 |
| Bst2BI | CACGAG | 1 cut(s) | 2481 |
| Bst2UI | CCWGG | 7 cut(s) | 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BstAFI | CTTAAG | 1 cut(s) | 1685 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 11, 819 |
| BstAUI | TGTACA | 1 cut(s) | 2334 |
| BstC8I | GCNNGC | 3 cut(s) | 808, 815, 824 |
| BstDEI | CTNAG | 5 cut(s) | 1278, 1391, 1469, 1983, 2025 |
| BstDSI | CCRYGG | 6 cut(s) | 60, 84, 108, 132, 264, 1139 |
| BstF5I | GGATG | 6 cut(s) | 102, 800, 1068, 1102, 1908, 2622 |
| BstFNI | CGCG | 1 cut(s) | 2639 |
| BstHHI | GCGC | 1 cut(s) | 738 |
| BstMAI | GTCTC | 6 cut(s) | 14, 1469, 1859, 2339, 2400, 2576 |
| BstMCI | CGRYCG | 4 cut(s) | 294, 366, 390, 414 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 323, 347, 733, 819, 823, 1342, 2645 |
| BstNI | CCWGG | 7 cut(s) | 491, 792, 1107, 1219, 1239, 2072, 2104 |
| BstNSI | RCATGY | 3 cut(s) | 810, 1267, 2335 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1041 |
| BstSCI | CCNGG | 8 cut(s) | 225, 489, 790, 1105, 1217, 1237, 2070, 2102 |
| BstSFI | CTRYAG | 1 cut(s) | 2508 |
| BstSLI | GKGCMC | 1 cut(s) | 1311 |
| BstUI | CGCG | 1 cut(s) | 2639 |
| BstV1I | GCAGC | 7 cut(s) | 544, 797, 981, 1332, 1587, 1913, 2028 |
| BstV2I | GAAGAC | 5 cut(s) | 552, 648, 930, 1655, 1854 |
| BstX2I | RGATCY | 3 cut(s) | 1975, 2002, 2098 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 61, 85, 109, 133 |
| BstYI | RGATCY | 3 cut(s) | 1975, 2002, 2098 |
| BstZI | CGGCCG | 3 cut(s) | 363, 387, 411 |
| BsuI | GTATCC | 1 cut(s) | 1801 |
| BtgI | CCRYGG | 6 cut(s) | 60, 84, 108, 132, 264, 1139 |
| BtgZI | GCGATG | 1 cut(s) | 542 |
| BtrI | CACGTC | 1 cut(s) | 1244 |
| BtsCI | GGATG | 6 cut(s) | 102, 800, 1068, 1102, 1908, 2622 |
| BtsI | GCAGTG | 3 cut(s) | 824, 2219, 2643 |
| BtsIMutI | CAGTG | 5 cut(s) | 680, 824, 1466, 2219, 2643 |
| Cac8I | GCNNGC | 3 cut(s) | 808, 815, 824 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1379, 1468 |
| CciI | TCATGA | 4 cut(s) | 1417, 2194, 2206, 2413 |
| CfoI | GCGC | 1 cut(s) | 738 |
| Cfr13I | GGNCC | 1 cut(s) | 627 |
| CseI | GACGC | 3 cut(s) | 2473, 2628, 2645 |
| CsiI | ACCWGGT | 1 cut(s) | 1217 |
| Csp6I | GTAC | 8 cut(s) | 416, 843, 864, 1566, 1625, 2335, 2458, 2560 |
| CviQI | GTAC | 8 cut(s) | 416, 843, 864, 1566, 1625, 2335, 2458, 2560 |
| DdeI | CTNAG | 5 cut(s) | 1278, 1391, 1469, 1983, 2025 |
| DraIII | CACNNNGTG | 1 cut(s) | 1472 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1657 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2491 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1657 |
| EagI | CGGCCG | 3 cut(s) | 363, 387, 411 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2491 |
| EciI | GGCGGA | 1 cut(s) | 2307 |
| Ecl136II | GAGCTC | 1 cut(s) | 2200 |
| EclXI | CGGCCG | 3 cut(s) | 363, 387, 411 |
| Eco130I | CCWWGG | 3 cut(s) | 264, 2287, 2607 |
| Eco24I | GRGCYC | 1 cut(s) | 2202 |
| Eco52I | CGGCCG | 3 cut(s) | 363, 387, 411 |
| Eco53kI | GAGCTC | 1 cut(s) | 2200 |
| Eco57I | CTGAAG | 3 cut(s) | 36, 348, 372 |
| Eco88I | CYCGRG | 1 cut(s) | 2406 |
| EcoICRI | GAGCTC | 1 cut(s) | 2200 |
| EcoRI | GAATTC | 1 cut(s) | 2190 |
| EcoRII | CCWGG | 7 cut(s) | 489, 790, 1105, 1217, 1237, 2070, 2102 |
| EcoT14I | CCWWGG | 3 cut(s) | 264, 2287, 2607 |
| EcoT22I | ATGCAT | 1 cut(s) | 1077 |
| EcoT38I | GRGCYC | 1 cut(s) | 2202 |
| ErhI | CCWWGG | 3 cut(s) | 264, 2287, 2607 |
| Esp3I | CGTCTC | 1 cut(s) | 2576 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 820, 852 |
| FaqI | GGGAC | 3 cut(s) | 910, 1645, 1688 |
| FauI | CCCGC | 1 cut(s) | 853 |
| FauNDI | CATATG | 2 cut(s) | 1092, 2600 |
| FbaI | TGATCA | 2 cut(s) | 1065, 1459 |
| FokI | GGATG | 6 cut(s) | 89, 807, 1075, 1089, 1895, 2629 |
| FriOI | GRGCYC | 1 cut(s) | 2202 |
| GlaI | GCGC | 1 cut(s) | 737 |
| GsaI | CCCAGC | 4 cut(s) | 326, 350, 908, 956 |
| GsuI | CTGGAG | 2 cut(s) | 1700, 1920 |
| HapII | CCGG | 3 cut(s) | 227, 1000, 2501 |
| HgaI | GACGC | 3 cut(s) | 2473, 2628, 2645 |
| HhaI | GCGC | 1 cut(s) | 738 |
| Hin6I | GCGC | 1 cut(s) | 736 |
| HinP1I | GCGC | 1 cut(s) | 736 |
| HincII | GTYRAC | 1 cut(s) | 1538 |
| HindII | GTYRAC | 1 cut(s) | 1538 |
| HindIII | AAGCTT | 1 cut(s) | 2117 |
| HpaII | CCGG | 3 cut(s) | 227, 1000, 2501 |
| HphI | GGTGA | 3 cut(s) | 763, 1165, 1207 |
| Hpy166II | GTNNAC | 4 cut(s) | 510, 1269, 1538, 2643 |
| Hpy8I | GTNNAC | 4 cut(s) | 510, 1269, 1538, 2643 |
| Hpy99I | CGWCG | 6 cut(s) | 100, 124, 148, 172, 2467, 2639 |
| HpyAV | CCTTC | 4 cut(s) | 67, 1424, 2017, 2249 |
| HpyCH4IV | ACGT | 3 cut(s) | 783, 1243, 1754 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 323, 347, 733, 819, 823, 1342, 2645 |
| HpyF3I | CTNAG | 5 cut(s) | 1278, 1391, 1469, 1983, 2025 |
| HpySE526I | ACGT | 3 cut(s) | 783, 1243, 1754 |
| HspAI | GCGC | 1 cut(s) | 736 |
| KpnI | GGTACC | 1 cut(s) | 867 |
| Ksp22I | TGATCA | 2 cut(s) | 1065, 1459 |
| LmnI | GCTCC | 8 cut(s) | 37, 763, 1681, 1701, 1716, 2164, 2294, 2371 |
| Lsp1109I | GCAGC | 7 cut(s) | 544, 797, 981, 1332, 1587, 1913, 2028 |
| LweI | GCATC | 5 cut(s) | 663, 1111, 1309, 1888, 2607 |
| MabI | ACCWGGT | 1 cut(s) | 1217 |
| MaeII | ACGT | 3 cut(s) | 783, 1243, 1754 |
| MaeIII | GTNAC | 7 cut(s) | 917, 995, 1213, 1300, 1450, 1939, 2483 |
| MbiI | CCGCTC | 1 cut(s) | 32 |
| MfeI | CAATTG | 2 cut(s) | 753, 1725 |
| MflI | RGATCY | 3 cut(s) | 1975, 2002, 2098 |
| MhlI | GDGCHC | 9 cut(s) | 288, 312, 336, 360, 384, 432, 456, 1311, 2202 |
| MlsI | TGGCCA | 3 cut(s) | 53, 221, 269 |
| MluCI | AATT | 7 cut(s) | 753, 1020, 1489, 1725, 2062, 2190, 2496 |
| MluI | ACGCGT | 1 cut(s) | 2637 |
| MluNI | TGGCCA | 3 cut(s) | 53, 221, 269 |
| MlyI | GAGTC | 9 cut(s) | 679, 796, 997, 1370, 1667, 1699, 2310, 2402, 2516 |
| MmeI | TCCRAC | 3 cut(s) | 2186, 2349, 2544 |
| Mox20I | TGGCCA | 3 cut(s) | 53, 221, 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 1077 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1674 |
| MscI | TGGCCA | 3 cut(s) | 53, 221, 269 |
| MseI | TTAA | 6 cut(s) | 615, 1134, 1493, 1686, 1784, 2271 |
| MslI | CAYNNNNRTG | 4 cut(s) | 59, 83, 107, 131 |
| Msp20I | TGGCCA | 3 cut(s) | 53, 221, 269 |
| MspA1I | CMGCKG | 3 cut(s) | 326, 350, 2087 |
| MspCI | CTTAAG | 1 cut(s) | 1685 |
| MspI | CCGG | 3 cut(s) | 227, 1000, 2501 |
| MspR9I | CCNGG | 8 cut(s) | 227, 491, 792, 1107, 1219, 1239, 2072, 2104 |
| MunI | CAATTG | 2 cut(s) | 753, 1725 |
| MvaI | CCWGG | 7 cut(s) | 491, 792, 1107, 1219, 1239, 2072, 2104 |
| MvnI | CGCG | 1 cut(s) | 2639 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 323, 347, 733, 819, 823, 1342, 2645 |
| NciI | CCSGG | 1 cut(s) | 227 |
| NcoI | CCATGG | 1 cut(s) | 264 |
| NdeI | CATATG | 2 cut(s) | 1092, 2600 |
| NlaIV | GGNNCC | 6 cut(s) | 247, 865, 1365, 1718, 2004, 2100 |
| NmuCI | GTSAC | 3 cut(s) | 1213, 1450, 2483 |
| NsiI | ATGCAT | 1 cut(s) | 1077 |
| NspI | RCATGY | 3 cut(s) | 810, 1267, 2335 |
| OliI | CACNNNNGTG | 3 cut(s) | 59, 83, 131 |
| PaeI | GCATGC | 1 cut(s) | 810 |
| PagI | TCATGA | 4 cut(s) | 1417, 2194, 2206, 2413 |
| PciI | ACATGT | 2 cut(s) | 1263, 2331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1674 |
| PfeI | GAWTC | 5 cut(s) | 572, 1129, 1382, 1966, 2282 |
| PflFI | GACNNNGTC | 1 cut(s) | 2525 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2613 |
| PfoI | TCCNGGA | 1 cut(s) | 790 |
| PleI | GAGTC | 9 cut(s) | 679, 795, 997, 1370, 1666, 1698, 2310, 2401, 2516 |
| PpsI | GAGTC | 9 cut(s) | 679, 795, 997, 1370, 1666, 1698, 2310, 2401, 2516 |
| PscI | ACATGT | 2 cut(s) | 1263, 2331 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1041 |
| Psp124BI | GAGCTC | 1 cut(s) | 2202 |
| Psp6I | CCWGG | 7 cut(s) | 489, 790, 1105, 1217, 1237, 2070, 2102 |
| PspFI | CCCAGC | 4 cut(s) | 322, 346, 904, 952 |
| PspGI | CCWGG | 7 cut(s) | 489, 790, 1105, 1217, 1237, 2070, 2102 |
| PspN4I | GGNNCC | 6 cut(s) | 247, 865, 1365, 1718, 2004, 2100 |
| PspPI | GGNCC | 1 cut(s) | 627 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1379, 1468 |
| PsuI | RGATCY | 3 cut(s) | 1975, 2002, 2098 |
| PsyI | GACNNNGTC | 1 cut(s) | 2525 |
| PvuII | CAGCTG | 2 cut(s) | 326, 350 |
| RsaI | GTAC | 8 cut(s) | 417, 844, 865, 1567, 1626, 2336, 2459, 2561 |
| RsaNI | GTAC | 8 cut(s) | 416, 843, 864, 1566, 1625, 2335, 2458, 2560 |
| RseI | CAYNNNNRTG | 4 cut(s) | 59, 83, 107, 131 |
| SacI | GAGCTC | 1 cut(s) | 2202 |
| SaqAI | TTAA | 6 cut(s) | 615, 1134, 1493, 1686, 1784, 2271 |
| Sau96I | GGNCC | 1 cut(s) | 627 |
| SchI | GAGTC | 9 cut(s) | 679, 796, 997, 1370, 1667, 1699, 2310, 2402, 2516 |
| ScrFI | CCNGG | 8 cut(s) | 227, 491, 792, 1107, 1219, 1239, 2072, 2104 |
| SduI | GDGCHC | 9 cut(s) | 288, 312, 336, 360, 384, 432, 456, 1311, 2202 |
| SexAI | ACCWGGT | 1 cut(s) | 1217 |
| SfaNI | GCATC | 5 cut(s) | 663, 1111, 1309, 1888, 2607 |
| SfcI | CTRYAG | 1 cut(s) | 2508 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 59, 83, 107, 131 |
| SmlI | CTYRAG | 1 cut(s) | 1685 |
| SmoI | CTYRAG | 1 cut(s) | 1685 |
| SphI | GCATGC | 1 cut(s) | 810 |
| Sse9I | AATT | 7 cut(s) | 753, 1020, 1489, 1725, 2062, 2190, 2496 |
| SsiI | CCGC | 7 cut(s) | 30, 366, 390, 860, 1342, 2087, 2292 |
| SspI | AATATT | 2 cut(s) | 2213, 2666 |
| SstI | GAGCTC | 1 cut(s) | 2202 |
| StyD4I | CCNGG | 8 cut(s) | 225, 489, 790, 1105, 1217, 1237, 2070, 2102 |
| StyI | CCWWGG | 3 cut(s) | 264, 2287, 2607 |
| TaiI | ACGT | 3 cut(s) | 786, 1246, 1757 |
| TaqI | TCGA | 3 cut(s) | 159, 575, 1896 |
| TasI | AATT | 7 cut(s) | 753, 1020, 1489, 1725, 2062, 2190, 2496 |
| TatI | WGTACW | 3 cut(s) | 842, 2334, 2559 |
| TauI | GCSGC | 4 cut(s) | 32, 368, 392, 1345 |
| TfiI | GAWTC | 5 cut(s) | 572, 1129, 1382, 1966, 2282 |
| Tru1I | TTAA | 6 cut(s) | 615, 1134, 1493, 1686, 1784, 2271 |
| Tru9I | TTAA | 6 cut(s) | 615, 1134, 1493, 1686, 1784, 2271 |
| TscAI | CASTG | 5 cut(s) | 687, 824, 1473, 2226, 2650 |
| TseFI | GTSAC | 3 cut(s) | 1213, 1450, 2483 |
| TseI | GCWGC | 7 cut(s) | 557, 810, 969, 1345, 1575, 1901, 2016 |
| Tsp45I | GTSAC | 3 cut(s) | 1213, 1450, 2483 |
| TspGWI | ACGGA | 4 cut(s) | 1214, 2202, 2328, 2336 |
| TspRI | CASTG | 5 cut(s) | 687, 824, 1473, 2226, 2650 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2525 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2613 |
| Vha464I | CTTAAG | 1 cut(s) | 1685 |
| XapI | RAATTY | 2 cut(s) | 1489, 2190 |
| XceI | RCATGY | 3 cut(s) | 810, 1267, 2335 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1674 |
| Zsp2I | ATGCAT | 1 cut(s) | 1077 |